RchiOBHm_Chr4g0395141

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002586
Physical Location & Seq
Reverse (-)
10929155 .. 10930245
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36759

Sequence Viewer

Length: 771 bp
ATGGGCAGAAATCTATGCCACTTCTGTTTTTTGAGTTTCTTTGTTACTCTAACAGTAGCAGAGTCCAAGTGGAACATTTTGAATCAGAGAACCAGGAATGGGATGAAGATCAGCTTGAAGAATTACTGTGAGAGCTGGAGGATGAATGTAGAGCTGCACAACATTAGAGAGTTCCAAGTGGTGCCTGAAGAGTGCATAGGATACGTTGGAAAATATGTTACTTCGACTCAGTACAAGGTGGACTCAGAAAGGGCTATTGAGGAGTCCATTGTGTATCTAAGTACTAGCTGTACTTTGAAGAATGATGGGAGAGATGTATGGATTTTTGACATTGATGATACACTGCTCTCTACTGTGCCTTACTACAAGGGACATCATTTCGGGGGTGAGAAGTTGAACCTGACTGCTTTGGAGGAGTGGATGAGCCATGGCAAGGCACCTGCTTTGGAACACTCGCTCAAACTCTTCAATGAGATCAAAGCCAGAGGGCTGCATATCATTTTGGTTTCTTCAAGGAGGGAGCATCTTAGATCAGCCACAATAAACAACCTTCTCCATGTTGGCTTCTATGGGTGGACAAGTCTCATTTTAAGGGGTCCTGAGGATGAAGTGAAGGGGGTGCAAGATTTCAAAGCTGATGTGAGGAAAAAATTGACGGTTGGTGGATACAGAGTTTGGGGCATATTGGGAGATCAATATAGCAGCATTGACGGACTTCCAAGAGCAAAAAGGACGTTCAAACTCCCGAACCCATTGTACTATGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

256

Amino Acids

29.47

Weight (kDa)

8.85

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 37 - 255 5.2e-69 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 448
Acc36I ACCTGC 1 cut(s) 448
AccB1I GGYRCC 2 cut(s) 181, 436
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 4 cut(s) 233, 283, 292, 758
AfiI CCNNNNNNNGG 2 cut(s) 99, 433
AgsI TTSAA 8 cut(s) 82, 118, 298, 397, 469, 513, 631, 739
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 5 cut(s) 114, 135, 154, 288, 635
AluI AGCT 5 cut(s) 114, 135, 154, 288, 635
Alw26I GTCTC 1 cut(s) 587
ApeKI GCWGC 3 cut(s) 154, 490, 702
AspS9I GGNCC 1 cut(s) 596
AsuHPI GGTGA 1 cut(s) 398
AvaII GGWCC 1 cut(s) 596
AxyI CCTNAGG 1 cut(s) 600
BanI GGYRCC 2 cut(s) 181, 436
BbvI GCAGC 3 cut(s) 141, 477, 714
BccI CCATC 1 cut(s) 299
BciT130I CCWGG 1 cut(s) 94
BciVI GTATCC 2 cut(s) 194, 659
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 448
BfuI GTATCC 2 cut(s) 194, 659
BisI GCNGC 3 cut(s) 155, 491, 703
BlsI GCNGC 3 cut(s) 156, 492, 704
BmcAI AGTACT 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 596
BmgT120I GGNCC 1 cut(s) 596
BmiI GGNNCC 3 cut(s) 183, 438, 597
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 532
BpmI CTGGAG 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 427
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 433
Bse21I CCTNAGG 1 cut(s) 600
Bse8I GATNNNNATC 1 cut(s) 107
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 4 cut(s) 108, 147, 426, 610
BseJI GATNNNNATC 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 99, 433
BseMII CTCAG 3 cut(s) 242, 258, 591
BseRI GAGGAG 2 cut(s) 275, 428
BseXI GCAGC 3 cut(s) 141, 477, 714
BsgI GTGCAG 1 cut(s) 140
BshNI GGYRCC 2 cut(s) 181, 436
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 2 cut(s) 99, 433
BsmAI GTCTC 1 cut(s) 587
BsmFI GGGAC 1 cut(s) 384
Bsp143I GATC 4 cut(s) 108, 474, 530, 691
Bsp19I CCATGG 1 cut(s) 427
BspCNI CTCAG 3 cut(s) 241, 257, 592
BspLI GGNNCC 3 cut(s) 183, 438, 597
BspMI ACCTGC 1 cut(s) 448
BspT107I GGYRCC 2 cut(s) 181, 436
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 4 cut(s) 108, 474, 530, 691
BssT1I CCWWGG 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 4 cut(s) 55, 128, 355, 658
Bst6I CTCTTC 2 cut(s) 183, 470
BstDEI CTNAG 5 cut(s) 228, 244, 278, 527, 600
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 4 cut(s) 108, 147, 426, 610
BstKTI GATC 4 cut(s) 111, 477, 533, 694
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 4 cut(s) 108, 474, 530, 691
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 141, 477, 714
Bsu36I CCTNAGG 1 cut(s) 600
BsuI GTATCC 2 cut(s) 194, 659
BtgI CCRYGG 1 cut(s) 427
BtsCI GGATG 4 cut(s) 108, 147, 426, 610
BtsI GCAGTG 1 cut(s) 341
BtsIMutI CAGTG 1 cut(s) 341
BveI ACCTGC 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 596
Csp6I GTAC 4 cut(s) 232, 282, 291, 757
CviAII CATG 2 cut(s) 428, 557
CviQI GTAC 4 cut(s) 232, 282, 291, 757
DdeI CTNAG 5 cut(s) 228, 244, 278, 527, 600
DpnI GATC 4 cut(s) 110, 476, 532, 693
DpnII GATC 4 cut(s) 108, 474, 530, 691
Eam1104I CTCTTC 2 cut(s) 183, 470
EarI CTCTTC 2 cut(s) 183, 470
Eco130I CCWWGG 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 2 cut(s) 431, 560
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FaqI GGGAC 1 cut(s) 384
FatI CATG 2 cut(s) 427, 556
Fnu4HI GCNGC 3 cut(s) 155, 491, 703
FokI GGATG 4 cut(s) 115, 154, 433, 617
Fsp4HI GCNGC 3 cut(s) 155, 491, 703
FspBI CTAG 1 cut(s) 285
GluI GCNGC 3 cut(s) 155, 491, 703
GsuI CTGGAG 1 cut(s) 157
Hin1II CATG 2 cut(s) 431, 560
HinfI GANTC 5 cut(s) 62, 82, 226, 242, 263
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 241, 576
Hpy188I TCNGA 2 cut(s) 87, 247
Hpy188III TCNNGA 3 cut(s) 599, 745, 768
Hpy8I GTNNAC 2 cut(s) 241, 576
HpyAV CCTTC 2 cut(s) 560, 607
HpyCH4III ACNGT 4 cut(s) 55, 128, 355, 658
HpyCH4IV ACGT 2 cut(s) 204, 734
HpyCH4V TGCA 4 cut(s) 157, 195, 493, 622
HpyF3I CTNAG 5 cut(s) 228, 244, 278, 527, 600
HpySE526I ACGT 2 cut(s) 204, 734
Hsp92II CATG 2 cut(s) 431, 560
Kzo9I GATC 4 cut(s) 108, 474, 530, 691
LmnI GCTCC 1 cut(s) 520
LpnPI CCDG 8 cut(s) 79, 106, 121, 198, 413, 453, 496, 612
Lsp1109I GCAGC 3 cut(s) 141, 477, 714
LweI GCATC 1 cut(s) 532
MaeI CTAG 1 cut(s) 285
MaeII ACGT 2 cut(s) 204, 734
MaeIII GTNAC 2 cut(s) 43, 217
MalI GATC 4 cut(s) 110, 476, 532, 693
MboI GATC 4 cut(s) 108, 474, 530, 691
MboII GAAGA 6 cut(s) 118, 130, 200, 310, 457, 501
MluCI AATT 2 cut(s) 121, 650
MlyI GAGTC 4 cut(s) 71, 220, 236, 272
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 7 cut(s) 132, 253, 406, 479, 510, 595, 636
MseI TTAA 1 cut(s) 590
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
NcoI CCATGG 1 cut(s) 427
NdeII GATC 4 cut(s) 108, 474, 530, 691
NlaIII CATG 2 cut(s) 431, 560
NlaIV GGNNCC 3 cut(s) 183, 438, 597
PaqCI CACCTGC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 3 cut(s) 156, 492, 704
PleI GAGTC 4 cut(s) 70, 220, 236, 271
PpsI GAGTC 4 cut(s) 70, 220, 236, 271
PpuMI RGGWCCY 1 cut(s) 596
Psp5II RGGWCCY 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 3 cut(s) 183, 438, 597
PspPI GGNCC 1 cut(s) 596
PspPPI RGGWCCY 1 cut(s) 596
PsrI GAACNNNNNNTAC 1 cut(s) 740
RsaI GTAC 4 cut(s) 233, 283, 292, 758
RsaNI GTAC 4 cut(s) 232, 282, 291, 757
SaqAI TTAA 1 cut(s) 590
SatI GCNGC 3 cut(s) 155, 491, 703
Sau3AI GATC 4 cut(s) 108, 474, 530, 691
Sau96I GGNCC 1 cut(s) 596
ScaI AGTACT 1 cut(s) 283
SchI GAGTC 4 cut(s) 71, 220, 236, 272
ScrFI CCNGG 1 cut(s) 94
SfaNI GCATC 1 cut(s) 532
SinI GGWCC 1 cut(s) 596
Sse9I AATT 2 cut(s) 121, 650
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 4 cut(s) 55, 128, 355, 658
TaiI ACGT 2 cut(s) 207, 737
TaqI TCGA 1 cut(s) 224
TasI AATT 2 cut(s) 121, 650
TatI WGTACW 4 cut(s) 231, 281, 290, 756
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TscAI CASTG 1 cut(s) 348
TseI GCWGC 3 cut(s) 154, 490, 702
TspDTI ATGAA 3 cut(s) 119, 158, 621
TspGWI ACGGA 1 cut(s) 726
TspRI CASTG 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 596
XspI CTAG 1 cut(s) 285
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.