Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003427

Physical Location & Seq

Genomic Coordinates Forward (+)

1073274 .. 1075568

Gene Structure 2295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCGCTATGGATGGACGCTGGAGCGACGCCGACCACGGAGAAGGAAAAGGCTGATCTTGAAGCTATTTCTGCTCTCAAAGAATCCACCGCCATCGAATTCAAAGAAGAGGGCAATGAATGTGTAAGGAAAGGGAAAAAGCATTACTCTGAGGCGATTGATTGTTACACGAAAGCCATTAGTCAGGGAGTTCTAAGTGATTCAGAGACCTCTATTTTGTTCTCGAATCGATCCCATGTTAATCTACTCTTAGGCAACTATCGGCGTGCCCTCACCGATGCTGAGGAATCAATGAGGTTATCTCCTCATAACGTTAAGGCGGTGTATCGAGCTGCTAAGGCATCCATGTCATTGGATTTGCTGAACGAGGCAAAGTCTTATTGTGAAAAGGGAATCGAGAATGATCCGAGTAATGAGGACATGAAGAAGCTTTTAAAACTTGTGAATTCAAAGAAGCAAGAGAAAGAACAACATGAGGCTCAAGCCTCACAGGCGGTGGTGGAAGCCAAGGCTTGTCTCTCTGCGATCGAGAACAGAGGAGTGAAGATTGGCAAAGCAATGTACCGAGAACTCACTGGTTTGAAGAAGCCAATGTTAGATAAAAACAACATCCTTCATTGGCCTGTCCTGCTTCTTTACGCTGAGGCCATGACAAGTGACTTTGTTGAGGACTTTTGTGAAACAGACATGTTTGCAACTCATCTTGATATGATGTTTTCAGAGGACAGCCCGCCGCTGCCATGGGATAAAAACAACGAATACTCACGTGATGTTATTGAGCTTTACTACGAGGCGAGTTCAGGAACTCCATTGCCTAGGAGTAGAGTTCTCCAGTATCTTTTAGAAGGTACAAAAGGTTCTCAAGCTGAAACTACCGGAGAAGAGGACACAAGCGCAACCAAAACACCCTCCTACCTGAAAGGTTCTTCGGGTATGGTTAAAGTGAACGAGAGAAGAACATTGCATGACGTGTTGAAAGAACCTAAGTTTGTCATCCCTGAGATTCCAGTCTTTTACATCGTATCAAAGAGGTCCAAATTCTACAAGGACTTTACCGCTGGAAAATGGACTCCACCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19 TPR_8

Protein Analysis

360

Amino Acids

40.51

Weight (kDa)

5.8

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	30 - 109	4.5e-06	Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_19	PF14559	84 - 145	4.3e-06	Tetratricopeptide repeat
Wheel	PF18972	200 - 268	7.1e-13	Cns1/TTC4 Wheel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04130 AT1G04130
fragaria_vesca	FvH4_2g20260 FvH4_2g20260 FvH4_2g20260
malus_domestica	MD05G1186300.v1.1 MD05G1186500.v1.1 MD10G1174200.v1.1 MD10G1174300.v1.1
prunus_persica	Prupe.1G573100_v2.0.a1 Prupe.8G213100_v2.0.a1
pyrus_communis	pycom10g15020 pycom10g15030
rosa_chinensis	RchiOBHm_Chr6g0286031 RchiOBHm_Chr6g0286041
rosa_laevigata	RLG00000012587 RLG00000012588
rosa_multiflora	Rmu_co8274415.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230420 Rroxscaffold_3G00250000 Rroxscaffold_7G00182510
rosa_rugosa	Rorug06G0178400 Rorug06G0178500
rosa_samantha	Rh5CG093800 Rh6AG290400 Rh6AG290500 Rh6BG107700 Rh6BG293900 Rh6BG294000 Rh6CG293400 Rh6CG293500 Rh6DG285500 Rh6DG285600 Rh7CG476900 Rh7DG446100
rosa_wichuraiana	Rw6G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	90, 320, 494, 731, 734, 1056
AclI	AACGTT	1 cut(s)	312
AclWI	GGATC	2 cut(s)	225, 398
AcsI	RAATTY	3 cut(s)	98, 445, 1037
AcvI	CACGTG	1 cut(s)	767
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	2 cut(s)	563, 850
AflIII	ACRYGT	2 cut(s)	687, 969
AgsI	TTSAA	5 cut(s)	62, 103, 450, 583, 976
AjiI	CACGTC	1 cut(s)	970
AluBI	AGCT	5 cut(s)	65, 332, 430, 781, 866
AluI	AGCT	5 cut(s)	65, 332, 430, 781, 866
Alw26I	GTCTC	2 cut(s)	200, 521
AlwI	GGATC	2 cut(s)	225, 398
AoxI	GGCC	2 cut(s)	620, 645
ApeKI	GCWGC	2 cut(s)	332, 736
ApoI	RAATTY	3 cut(s)	98, 445, 1037
ArsI	GACNNNNNNTTYG	2 cut(s)	199, 231
AspA2I	CCTAGG	1 cut(s)	815
AspLEI	GCGC	2 cut(s)	7, 896
AspS9I	GGNCC	1 cut(s)	1032
AsuHPI	GGTGA	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	1032
AvrII	CCTAGG	1 cut(s)	815
BaeGI	GKGCMC	1 cut(s)	271
BbrPI	CACGTG	1 cut(s)	767
BbvCI	CCTCAGC	2 cut(s)	282, 642
BbvI	GCAGC	2 cut(s)	319, 723
BccI	CCATC	2 cut(s)	7, 101
BcoDI	GTCTC	2 cut(s)	200, 521
BfaI	CTAG	1 cut(s)	816
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	491
BisI	GCNGC	3 cut(s)	333, 734, 737
BlnI	CCTAGG	1 cut(s)	815
BlsI	GCNGC	3 cut(s)	334, 735, 738
Bme18I	GGWCC	1 cut(s)	1032
BmgBI	CACGTC	1 cut(s)	970
BmgT120I	GGNCC	1 cut(s)	1032
BmsI	GCATC	2 cut(s)	268, 350
BplI	GAGNNNNNCTC	2 cut(s)	286, 318
BpmI	CTGGAG	2 cut(s)	42, 815
Bpu10I	CCTNAGC	3 cut(s)	282, 336, 642
BpuEI	CTTGAG	2 cut(s)	465, 846
Bsa29I	ATCGAT	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	767
BsaHI	GRCGYC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	4 cut(s)	36, 507, 740, 815
BsaWI	WCCGGW	1 cut(s)	875
Bse1I	ACTGG	3 cut(s)	580, 832, 1007
Bse3DI	GCAATG	4 cut(s)	121, 564, 809, 959
BseCI	ATCGAT	1 cut(s)	229
BseDI	CCNNGG	4 cut(s)	36, 507, 740, 815
BseGI	GGATG	4 cut(s)	18, 341, 609, 993
BseMI	GCAATG	4 cut(s)	121, 564, 809, 959
BseMII	CTCAG	4 cut(s)	141, 273, 633, 990
BseNI	ACTGG	3 cut(s)	580, 832, 1007
BseRI	GAGGAG	2 cut(s)	294, 552
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	319, 723
Bsh1285I	CGRYCG	1 cut(s)	528
BshFI	GGCC	2 cut(s)	622, 647
BshVI	ATCGAT	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	876
BsmAI	GTCTC	2 cut(s)	200, 521
BsnI	GGCC	2 cut(s)	622, 647
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	4 cut(s)	55, 230, 403, 525
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	6 cut(s)	90, 320, 494, 731, 734, 1056
BspANI	GGCC	2 cut(s)	622, 647
BspCNI	CTCAG	4 cut(s)	142, 274, 634, 991
BspDI	ATCGAT	1 cut(s)	229
BspPI	GGATC	2 cut(s)	225, 398
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	4 cut(s)	121, 564, 809, 959
BsrI	ACTGG	3 cut(s)	580, 832, 1007
BssECI	CCNNGG	4 cut(s)	36, 507, 740, 815
BssMI	GATC	4 cut(s)	55, 230, 403, 525
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	3 cut(s)	507, 740, 815
Bst6I	CTCTTC	2 cut(s)	102, 876
BstACI	GRCGYC	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	2 cut(s)	267, 731
BstDEI	CTNAG	8 cut(s)	150, 194, 250, 282, 336, 642, 984, 999
BstDSI	CCRYGG	2 cut(s)	36, 740
BstF5I	GGATG	4 cut(s)	18, 341, 609, 993
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 896
BstKTI	GATC	4 cut(s)	58, 233, 406, 528
BstMAI	GTCTC	2 cut(s)	200, 521
BstMBI	GATC	4 cut(s)	55, 230, 403, 525
BstMCI	CGRYCG	1 cut(s)	528
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 338, 491, 628
BstNSI	RCATGY	1 cut(s)	691
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	319, 723
BstXI	CCANNNNNNTGG	1 cut(s)	352
Bsu15I	ATCGAT	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	622, 647
BsuTUI	ATCGAT	1 cut(s)	229
BtgI	CCRYGG	2 cut(s)	36, 740
BtrI	CACGTC	1 cut(s)	970
BtsCI	GGATG	4 cut(s)	18, 341, 609, 993
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	2 cut(s)	267, 731
CfoI	GCGC	2 cut(s)	7, 896
Cfr13I	GGNCC	1 cut(s)	1032
ClaI	ATCGAT	1 cut(s)	229
CseI	GACGC	2 cut(s)	26, 37
Csp6I	GTAC	2 cut(s)	562, 849
CviAII	CATG	8 cut(s)	236, 346, 421, 473, 649, 688, 741, 965
CviQI	GTAC	2 cut(s)	562, 849
DdeI	CTNAG	8 cut(s)	150, 194, 250, 282, 336, 642, 984, 999
DpnI	GATC	4 cut(s)	57, 232, 405, 527
DpnII	GATC	4 cut(s)	55, 230, 403, 525
DraI	TTTAAA	1 cut(s)	435
Eam1104I	CTCTTC	2 cut(s)	102, 876
EarI	CTCTTC	2 cut(s)	102, 876
Eco130I	CCWWGG	3 cut(s)	507, 740, 815
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	1032
Eco72I	CACGTG	1 cut(s)	767
EcoRI	GAATTC	2 cut(s)	98, 445
EcoT14I	CCWWGG	3 cut(s)	507, 740, 815
ErhI	CCWWGG	3 cut(s)	507, 740, 815
FaeI	CATG	8 cut(s)	239, 349, 424, 476, 652, 691, 744, 968
FatI	CATG	8 cut(s)	235, 345, 420, 472, 648, 687, 740, 964
FauI	CCCGC	1 cut(s)	738
Fnu4HI	GCNGC	3 cut(s)	333, 734, 737
FokI	GGATG	4 cut(s)	25, 328, 596, 980
Fsp4HI	GCNGC	3 cut(s)	333, 734, 737
FspBI	CTAG	1 cut(s)	816
GlaI	GCGC	2 cut(s)	6, 895
GluI	GCNGC	3 cut(s)	333, 734, 737
GsuI	CTGGAG	2 cut(s)	42, 815
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	622, 647
HapII	CCGG	1 cut(s)	876
HgaI	GACGC	2 cut(s)	26, 37
HhaI	GCGC	2 cut(s)	7, 896
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	8 cut(s)	239, 349, 424, 476, 652, 691, 744, 968
Hin6I	GCGC	2 cut(s)	5, 894
HinP1I	GCGC	2 cut(s)	5, 894
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	7 cut(s)	83, 200, 226, 287, 393, 1003, 1069
HpaII	CCGG	1 cut(s)	876
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	946
Hpy188I	TCNGA	4 cut(s)	151, 205, 408, 721
Hpy188III	TCNNGA	6 cut(s)	59, 223, 397, 529, 704, 801
Hpy8I	GTNNAC	1 cut(s)	946
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	3 cut(s)	37, 623, 839
HpyCH4IV	ACGT	3 cut(s)	312, 766, 969
HpyCH4V	TGCA	2 cut(s)	695, 964
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 338, 491, 628
HpyF3I	CTNAG	8 cut(s)	150, 194, 250, 282, 336, 642, 984, 999
HpySE526I	ACGT	3 cut(s)	312, 766, 969
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	8 cut(s)	239, 349, 424, 476, 652, 691, 744, 968
HspAI	GCGC	2 cut(s)	5, 894
Kzo9I	GATC	4 cut(s)	55, 230, 403, 525
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	2 cut(s)	319, 723
LweI	GCATC	2 cut(s)	268, 350
MaeI	CTAG	1 cut(s)	816
MaeII	ACGT	3 cut(s)	312, 766, 969
MaeIII	GTNAC	2 cut(s)	164, 656
MalI	GATC	4 cut(s)	57, 232, 405, 527
MboI	GATC	4 cut(s)	55, 230, 403, 525
MboII	GAAGA	7 cut(s)	119, 436, 556, 595, 893, 918, 966
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	3 cut(s)	98, 445, 1037
MlyI	GAGTC	1 cut(s)	1063
MseI	TTAA	4 cut(s)	240, 315, 434, 939
MspA1I	CMGCKG	2 cut(s)	736, 1058
MspI	CCGG	1 cut(s)	876
MwoI	GCNNNNNNNGC	4 cut(s)	71, 338, 491, 628
NcoI	CCATGG	1 cut(s)	740
NdeII	GATC	4 cut(s)	55, 230, 403, 525
NlaIII	CATG	8 cut(s)	239, 349, 424, 476, 652, 691, 744, 968
NmuCI	GTSAC	1 cut(s)	656
NspI	RCATGY	1 cut(s)	691
PciI	ACATGT	1 cut(s)	687
PfeI	GAWTC	6 cut(s)	83, 200, 226, 287, 393, 1003
PkrI	GCNGC	3 cut(s)	334, 735, 738
Ple19I	CGATCG	1 cut(s)	528
PleI	GAGTC	1 cut(s)	1063
PmaCI	CACGTG	1 cut(s)	767
PmlI	CACGTG	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	1063
Ppu21I	YACGTR	1 cut(s)	767
PscI	ACATGT	1 cut(s)	687
Psp1406I	AACGTT	1 cut(s)	312
PspCI	CACGTG	1 cut(s)	767
PspPI	GGNCC	1 cut(s)	1032
PsrI	GAACNNNNNNTAC	2 cut(s)	841, 873
PvuI	CGATCG	1 cut(s)	528
RsaI	GTAC	2 cut(s)	563, 850
RsaNI	GTAC	2 cut(s)	562, 849
SaqAI	TTAA	4 cut(s)	240, 315, 434, 939
SatI	GCNGC	3 cut(s)	333, 734, 737
Sau3AI	GATC	4 cut(s)	55, 230, 403, 525
Sau96I	GGNCC	1 cut(s)	1032
SchI	GAGTC	1 cut(s)	1063
SduI	GDGCHC	1 cut(s)	271
SfaNI	GCATC	2 cut(s)	268, 350
SinI	GGWCC	1 cut(s)	1032
SmlI	CTYRAG	2 cut(s)	480, 861
SmoI	CTYRAG	2 cut(s)	480, 861
Sse9I	AATT	3 cut(s)	98, 445, 1037
SsiI	CCGC	6 cut(s)	90, 320, 494, 731, 734, 1056
SspMI	CTAG	1 cut(s)	816
StyI	CCWWGG	3 cut(s)	507, 740, 815
TaiI	ACGT	3 cut(s)	315, 769, 972
TaqI	TCGA	6 cut(s)	96, 224, 229, 328, 396, 528
TasI	AATT	3 cut(s)	98, 445, 1037
TauI	GCSGC	1 cut(s)	736
TfiI	GAWTC	6 cut(s)	83, 200, 226, 287, 393, 1003
Tru1I	TTAA	4 cut(s)	240, 315, 434, 939
Tru9I	TTAA	4 cut(s)	240, 315, 434, 939
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	2 cut(s)	332, 736
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	3 cut(s)	132, 437, 605
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	1032
XapI	RAATTY	3 cut(s)	98, 445, 1037
XceI	RCATGY	1 cut(s)	691
XmaJI	CCTAGG	1 cut(s)	815
XspI	CTAG	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.