Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003427

Physical Location & Seq

Genomic Coordinates Reverse (-)

19621153 .. 19624108

Gene Structure 2956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G213100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAAAAGGGGTCTGAACCCCAAACTGAAAGCGAAAGAGATGACCTCGATGCCATAGCCGCTCTCAAAGAAAATACTGCTATTGAACTCAAGGGTAACCAGTATGTGAAGATGGGCAAAAAGCACTTCGCTGATGCCATAGATTGGTACACGAGAGCAATAAATCAGCAAGCTTTGAGTGACTCTGACACGGCTTTGTACCGAGCTGCCAAAGCGTATTTTGCATTGAACTTGTTGCTTGAATCAACTTTGCATTGCCAAAATGGGCTTAAGCATGACCCAAGTAACGAAGAGCTAAAGAAGCTGTTAAGGCAAATTGAGTCAAAGAAGATGGAACATGAACAGCGTGAGGCTCAAGCTAATGTTTATTTCTTTGTTGAAACTATGCATGACCTTGTTTCCGCGATCGAAAGTAGAGGGCTGAAAATTGGGAAGGCAATGTATCAAGGACTTACAGGATTAAGAAAGCCTGTATTAGATAAGAATAATATTCTTCGTTGGCCAGTTCTTCTGCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGTGAGACTGAAATGTTGAGTTTCTCTGTCAAAACAAAGATTCTTCATTGTCTCTTAGAGGGCACTGCAGCTTCTCATGTGGAAAACATCGGTGATGAGGAAAAGGATGCAAATAAGAATTCTAATGATGGCAGCTCAGCAGGCAAAGGTTCCTCTAAATGGGTGAAAGTAAATGAGAAAAGAGCACTTCATGATGTTCTGAAAGAACCTAAATTTGTTATTCGAGGGATCCCAGTGTTTTTTGTTGTTTCTAAACGTTCCAGCTTCTATAAAGAGTTCAAAGCTGGGAAATGGGCTCCTCCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19 TPR_8

Protein Analysis

288

Amino Acids

32.44

Weight (kDa)

6.73

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04130 AT1G04130
fragaria_vesca	FvH4_2g20260 FvH4_2g20260 FvH4_2g20260
malus_domestica	MD05G1186300.v1.1 MD05G1186500.v1.1 MD10G1174200.v1.1 MD10G1174300.v1.1
prunus_persica	Prupe.1G573100_v2.0.a1 Prupe.8G213100_v2.0.a1
pyrus_communis	pycom10g15020 pycom10g15030
rosa_chinensis	RchiOBHm_Chr6g0286031 RchiOBHm_Chr6g0286041
rosa_laevigata	RLG00000012587 RLG00000012588
rosa_multiflora	Rmu_co8274415.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230420 Rroxscaffold_3G00250000 Rroxscaffold_7G00182510
rosa_rugosa	Rorug06G0178400 Rorug06G0178500
rosa_samantha	Rh5CG093800 Rh6AG290400 Rh6AG290500 Rh6BG107700 Rh6BG293900 Rh6BG294000 Rh6CG293400 Rh6CG293500 Rh6DG285500 Rh6DG285600 Rh7CG476900 Rh7DG446100
rosa_wichuraiana	Rw6G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	62
AccII	CGCG	1 cut(s)	404
AciI	CCGC	2 cut(s)	60, 402
AclI	AACGTT	1 cut(s)	811
AclWI	GGATC	2 cut(s)	778, 791
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	2 cut(s)	673, 767
AfaI	GTAC	2 cut(s)	149, 200
AfiI	CCNNNNNNNGG	2 cut(s)	144, 714
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	5 cut(s)	86, 229, 242, 380, 835
AluBI	AGCT	9 cut(s)	173, 206, 295, 304, 359, 626, 690, 819, 839
AluI	AGCT	9 cut(s)	173, 206, 295, 304, 359, 626, 690, 819, 839
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	2 cut(s)	554, 611
AlwI	GGATC	2 cut(s)	778, 791
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	3 cut(s)	206, 623, 687
ApoI	RAATTY	2 cut(s)	673, 767
AsuHPI	GGTGA	2 cut(s)	659, 730
BaeGI	GKGCMC	1 cut(s)	620
BalI	TGGCCA	1 cut(s)	502
BamHI	GGATCC	1 cut(s)	783
BanII	GRGCYC	1 cut(s)	853
BauI	CACGAG	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	742
BbvI	GCAGC	3 cut(s)	193, 635, 699
BccI	CCATC	3 cut(s)	106, 325, 677
BceAI	ACGGC	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	554, 611
BfmI	CTRYAG	1 cut(s)	621
BfrI	CTTAAG	1 cut(s)	269
BisI	GCNGC	4 cut(s)	60, 207, 624, 688
BlpI	GCTNAGC	1 cut(s)	691
BlsI	GCNGC	4 cut(s)	61, 208, 625, 689
BmiI	GGNNCC	3 cut(s)	706, 785, 852
BmrI	ACTGGG	1 cut(s)	782
BmsI	GCATC	3 cut(s)	40, 124, 652
BmuI	ACTGGG	1 cut(s)	782
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
Bpu1102I	GCTNAGC	1 cut(s)	691
BpuEI	CTTGAG	2 cut(s)	74, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 714
Bse1I	ACTGG	4 cut(s)	100, 503, 534, 788
Bse3DI	GCAATG	2 cut(s)	253, 444
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	2 cut(s)	144, 714
BseMI	GCAATG	2 cut(s)	253, 444
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	4 cut(s)	100, 503, 534, 788
BseRI	GAGGAG	1 cut(s)	843
BseSI	GKGCMC	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	193, 635, 699
BseYI	CCCAGC	1 cut(s)	839
Bsh1236I	CGCG	1 cut(s)	404
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	502
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	742
BslI	CCNNNNNNNGG	2 cut(s)	144, 714
BsmAI	GTCTC	2 cut(s)	554, 611
BsnI	GGCC	1 cut(s)	502
Bsp1286I	GDGCHC	3 cut(s)	620, 742, 853
Bsp143I	GATC	2 cut(s)	405, 783
Bsp1720I	GCTNAGC	1 cut(s)	691
BspACI	CCGC	2 cut(s)	60, 402
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	1 cut(s)	704
BspFNI	CGCG	1 cut(s)	404
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	3 cut(s)	706, 785, 852
BspMAI	CTGCAG	1 cut(s)	625
BspPI	GGATC	2 cut(s)	778, 791
BspQI	GCTCTTC	1 cut(s)	285
BspTI	CTTAAG	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	2 cut(s)	253, 444
BsrI	ACTGG	4 cut(s)	100, 503, 534, 788
BssMI	GATC	2 cut(s)	405, 783
BssSI	CACGAG	1 cut(s)	151
Bst2BI	CACGAG	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	285
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	171, 697
BstDEI	CTNAG	2 cut(s)	610, 691
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	667
BstFNI	CGCG	1 cut(s)	404
BstKTI	GATC	2 cut(s)	408, 786
BstMAI	GTCTC	2 cut(s)	554, 611
BstMBI	GATC	2 cut(s)	405, 783
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 212, 221, 301, 310, 696
BstPI	GGTNACC	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	1 cut(s)	620
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	3 cut(s)	193, 635, 699
BstX2I	RGATCY	1 cut(s)	783
BstYI	RGATCY	1 cut(s)	783
BsuRI	GGCC	1 cut(s)	502
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	3 cut(s)	541, 618, 795
Cac8I	GCNNGC	2 cut(s)	171, 697
CciI	TCATGA	1 cut(s)	745
Csp6I	GTAC	2 cut(s)	148, 199
CviAII	CATG	5 cut(s)	275, 338, 389, 632, 746
CviQI	GTAC	2 cut(s)	148, 199
DdeI	CTNAG	2 cut(s)	610, 691
DpnI	GATC	2 cut(s)	407, 785
DpnII	GATC	2 cut(s)	405, 783
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	853
Eco91I	GGTNACC	1 cut(s)	95
EcoO65I	GGTNACC	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	673
EcoT22I	ATGCAT	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	853
FaeI	CATG	5 cut(s)	278, 341, 392, 635, 749
FatI	CATG	5 cut(s)	274, 337, 388, 631, 745
Fnu4HI	GCNGC	4 cut(s)	60, 207, 624, 688
FokI	GGATG	1 cut(s)	674
FriOI	GRGCYC	1 cut(s)	853
Fsp4HI	GCNGC	4 cut(s)	60, 207, 624, 688
GluI	GCNGC	4 cut(s)	60, 207, 624, 688
GsaI	CCCAGC	1 cut(s)	843
HaeIII	GGCC	1 cut(s)	502
Hin1II	CATG	5 cut(s)	278, 341, 392, 635, 749
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	4 cut(s)	182, 242, 320, 595
HphI	GGTGA	2 cut(s)	659, 730
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	3 cut(s)	16, 187, 756
Hpy188III	TCNNGA	1 cut(s)	746
Hpy8I	GTNNAC	1 cut(s)	150
HpyAV	CCTTC	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	811
HpyCH4V	TGCA	6 cut(s)	224, 253, 388, 521, 623, 665
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 212, 221, 301, 310, 696
HpyF3I	CTNAG	2 cut(s)	610, 691
HpySE526I	ACGT	1 cut(s)	811
Hsp92II	CATG	5 cut(s)	278, 341, 392, 635, 749
Kzo9I	GATC	2 cut(s)	405, 783
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	856
LpnPI	CCDG	9 cut(s)	113, 441, 483, 516, 547, 681, 801, 825, 829
Lsp1109I	GCAGC	3 cut(s)	193, 635, 699
LweI	GCATC	3 cut(s)	40, 124, 652
MaeII	ACGT	1 cut(s)	811
MaeIII	GTNAC	4 cut(s)	95, 179, 284, 536
MalI	GATC	2 cut(s)	407, 785
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	2 cut(s)	405, 783
MboII	GAAGA	6 cut(s)	121, 302, 340, 485, 500, 590
MflI	RGATCY	1 cut(s)	783
MhlI	GDGCHC	3 cut(s)	620, 742, 853
MlsI	TGGCCA	1 cut(s)	502
MluCI	AATT	4 cut(s)	315, 426, 673, 767
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	2 cut(s)	176, 329
Mox20I	TGGCCA	1 cut(s)	502
Mph1103I	ATGCAT	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	3 cut(s)	270, 308, 461
Msp20I	TGGCCA	1 cut(s)	502
MspCI	CTTAAG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	6 cut(s)	59, 212, 221, 301, 310, 696
NdeII	GATC	2 cut(s)	405, 783
NlaIII	CATG	5 cut(s)	278, 341, 392, 635, 749
NlaIV	GGNNCC	3 cut(s)	706, 785, 852
NmuCI	GTSAC	2 cut(s)	179, 536
NsiI	ATGCAT	1 cut(s)	390
PagI	TCATGA	1 cut(s)	745
PciSI	GCTCTTC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	242, 595
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	61, 208, 625, 689
Ple19I	CGATCG	1 cut(s)	408
PleI	GAGTC	2 cut(s)	176, 328
PpsI	GAGTC	2 cut(s)	176, 328
Psp1406I	AACGTT	1 cut(s)	811
PspEI	GGTNACC	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	839
PspN4I	GGNNCC	3 cut(s)	706, 785, 852
PstI	CTGCAG	1 cut(s)	625
PsuI	RGATCY	1 cut(s)	783
PvuI	CGATCG	1 cut(s)	408
RsaI	GTAC	2 cut(s)	149, 200
RsaNI	GTAC	2 cut(s)	148, 199
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	270, 308, 461
SatI	GCNGC	4 cut(s)	60, 207, 624, 688
Sau3AI	GATC	2 cut(s)	405, 783
SchI	GAGTC	2 cut(s)	176, 329
SduI	GDGCHC	3 cut(s)	620, 742, 853
SfaNI	GCATC	3 cut(s)	40, 124, 652
SfcI	CTRYAG	1 cut(s)	621
SmlI	CTYRAG	3 cut(s)	89, 269, 354
SmoI	CTYRAG	3 cut(s)	89, 269, 354
Sse9I	AATT	4 cut(s)	315, 426, 673, 767
SsiI	CCGC	2 cut(s)	60, 402
SspI	AATATT	1 cut(s)	490
TaiI	ACGT	1 cut(s)	814
TaqI	TCGA	3 cut(s)	48, 408, 778
TasI	AATT	4 cut(s)	315, 426, 673, 767
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	242, 595
Tru1I	TTAA	3 cut(s)	270, 308, 461
Tru9I	TTAA	3 cut(s)	270, 308, 461
TscAI	CASTG	3 cut(s)	541, 625, 795
TseFI	GTSAC	2 cut(s)	179, 536
TseI	GCWGC	3 cut(s)	206, 623, 687
Tsp45I	GTSAC	2 cut(s)	179, 536
TspDTI	ATGAA	4 cut(s)	354, 532, 590, 734
TspRI	CASTG	3 cut(s)	541, 625, 795
Van91I	CCANNNNNTGG	1 cut(s)	144
Vha464I	CTTAAG	1 cut(s)	269
XapI	RAATTY	2 cut(s)	673, 767
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.