Rorug06G0178400

Tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003427
Physical Location & Seq
Forward (+)
28184524 .. 28189806
5283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0178400.1

Sequence Viewer

Length: 813 bp
ATGGAGAAGGAGAGGACTTACAGTGAGTTTGATTCGCTGAAGACAGAAACTTTCGGCTCAATTTGCTGCTGGGAGCTTACCAAGTACGAAAGGGGGTTGAAGAAGCTGGGGTCCGGGAATGCTTTGGGTTTGGGGCGTGTGGCGGAGGAGCGAAGGAATCGGAATCAGCTTCCCAAAGCTGGTAAATGCTGCTTCTCAATTTCAGCTTTCTGGAGAATCAATTCGGACCAAAAGCCACTTCTAGCCATTTTACCAAACAACATACCTTTCTTCCAAAAGCAGAAGCTGGTTCAAAATCACCTCCAAAATCAATCCCAAACTAAGCCTAAAGCTCCTAGCCTCCTTAGTGGGTGCCATCCCTCTATAATTCATCGATTGTTGTCGGCACAATCTAGAGAGATCGGTGTATTCAAAAAAAGGGAAAAAGAAAAAACTAGAGAGATCAGTGGTCGAGAAGAAGAACGACTGAGAGACAGAGAGAGCGGACAATTTGAGGAGATCTTTTTGTTCGCCGAATACAGAGAAAAGCGGCGACACGAAAAAATAAAAAAAGGGAGGGAGAAGAGAACGGGAAAGAAGGAAGAGGAGGAGAAGAGACGGACGGGAAGCTCTTGCGTAAAAGTTCAGCGTCCTCTTCTGATTCAGATATCAGGAACAGTGTGGTATCAAAATTTGAAAATATTTTCAAATCAGGCTGCAAAAAGGTTTTTGGAGCAGGTTGAAGCTTTGGAAAGATTCACAGAGGCAATATCTTTTGGTGGAATTAACTACGCTTTCCTGTCTTTTGATACAGGTCACATTGGCAGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19 TPR_8

Protein Analysis

270

Amino Acids

31.32

Weight (kDa)

9.76

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 706
AccB1I GGYRCC 1 cut(s) 351
AccBSI CCGCTC 1 cut(s) 483
AciI CCGC 3 cut(s) 143, 483, 529
AcsI RAATTY 1 cut(s) 670
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 6 cut(s) 100, 293, 412, 676, 687, 722
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 9 cut(s) 76, 106, 169, 179, 206, 286, 332, 609, 725
AluI AGCT 9 cut(s) 76, 106, 169, 179, 206, 286, 332, 609, 725
Alw26I GTCTC 2 cut(s) 465, 589
AlwNI CAGNNNCTG 2 cut(s) 286, 810
ApeKI GCWGC 4 cut(s) 66, 189, 695, 804
ApoI RAATTY 1 cut(s) 670
Asp700I GAANNNNTTC 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 111, 226
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 2 cut(s) 111, 226
BanI GGYRCC 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 47
BbvI GCAGC 3 cut(s) 53, 176, 682
BccI CCATC 1 cut(s) 363
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 465, 589
BfaI CTAG 4 cut(s) 242, 336, 393, 435
BfuAI ACCTGC 1 cut(s) 706
BglII AGATCT 1 cut(s) 498
BisI GCNGC 5 cut(s) 67, 190, 530, 696, 805
BlsI GCNGC 5 cut(s) 68, 191, 531, 697, 806
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 2 cut(s) 111, 226
BmgT120I GGNCC 2 cut(s) 111, 226
BmiI GGNNCC 2 cut(s) 112, 353
BmrFI CCNGG 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 47
BpmI CTGGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 115
Bsa29I ATCGAT 1 cut(s) 373
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseCI ATCGAT 1 cut(s) 373
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 458
BseRI GAGGAG 4 cut(s) 161, 509, 599, 602
BseXI GCAGC 3 cut(s) 53, 176, 682
BseYI CCCAGC 2 cut(s) 69, 106
BshNI GGYRCC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 373
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 2 cut(s) 465, 589
BsmBI CGTCTC 1 cut(s) 589
BsmI GAATGC 1 cut(s) 124
Bsp143I GATC 3 cut(s) 399, 441, 498
BspACI CCGC 3 cut(s) 143, 483, 529
BspCNI CTCAG 1 cut(s) 459
BspDI ATCGAT 1 cut(s) 373
BspLI GGNNCC 2 cut(s) 112, 353
BspMI ACCTGC 1 cut(s) 706
BspT107I GGYRCC 1 cut(s) 351
BsrBI CCGCTC 1 cut(s) 483
BssMI GATC 3 cut(s) 399, 441, 498
Bst4CI ACNGT 2 cut(s) 23, 658
Bst6I CTCTTC 4 cut(s) 557, 576, 587, 639
BstDEI CTNAG 3 cut(s) 321, 344, 467
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 3 cut(s) 402, 444, 501
BstMAI GTCTC 2 cut(s) 465, 589
BstMBI GATC 3 cut(s) 399, 441, 498
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 53, 176, 682
BstV2I GAAGAC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
Bsu15I ATCGAT 1 cut(s) 373
BsuTUI ATCGAT 1 cut(s) 373
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 3 cut(s) 28, 451, 663
BveI ACCTGC 1 cut(s) 706
CaiI CAGNNNCTG 2 cut(s) 286, 810
Cfr13I GGNCC 2 cut(s) 111, 226
ClaI ATCGAT 1 cut(s) 373
CseI GACGC 1 cut(s) 617
Csp6I GTAC 1 cut(s) 85
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 3 cut(s) 321, 344, 467
DpnI GATC 3 cut(s) 401, 443, 500
DpnII GATC 3 cut(s) 399, 441, 498
Eam1104I CTCTTC 4 cut(s) 557, 576, 587, 639
EarI CTCTTC 4 cut(s) 557, 576, 587, 639
EciI GGCGGA 1 cut(s) 158
Eco32I GATATC 1 cut(s) 648
Eco47I GGWCC 2 cut(s) 111, 226
Eco57I CTGAAG 1 cut(s) 59
EcoRV GATATC 1 cut(s) 648
Esp3I CGTCTC 1 cut(s) 589
FaiI YATR 2 cut(s) 263, 365
Fnu4HI GCNGC 5 cut(s) 67, 190, 530, 696, 805
FokI GGATG 1 cut(s) 342
Fsp4HI GCNGC 5 cut(s) 67, 190, 530, 696, 805
FspBI CTAG 4 cut(s) 242, 336, 393, 435
GluI GCNGC 5 cut(s) 67, 190, 530, 696, 805
GsaI CCCAGC 2 cut(s) 73, 110
GsuI CTGGAG 1 cut(s) 232
HapII CCGG 1 cut(s) 114
HgaI GACGC 1 cut(s) 617
HindIII AAGCTT 1 cut(s) 723
HinfI GANTC 6 cut(s) 32, 157, 163, 216, 640, 735
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 5 cut(s) 162, 226, 639, 645, 812
Hpy188III TCNNGA 4 cut(s) 211, 393, 452, 651
HpyAV CCTTC 2 cut(s) 147, 571
HpyCH4III ACNGT 2 cut(s) 23, 658
HpyCH4V TGCA 1 cut(s) 698
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 3 cut(s) 321, 344, 467
Kzo9I GATC 3 cut(s) 399, 441, 498
LmnI GCTCC 4 cut(s) 73, 148, 337, 712
Lsp1109I GCAGC 3 cut(s) 53, 176, 682
MaeI CTAG 4 cut(s) 242, 336, 393, 435
MaeIII GTNAC 1 cut(s) 794
MalI GATC 3 cut(s) 401, 443, 500
MbiI CCGCTC 1 cut(s) 483
MboI GATC 3 cut(s) 399, 441, 498
MboII GAAGA 9 cut(s) 52, 112, 262, 467, 470, 574, 593, 604, 626
MflI RGATCY 1 cut(s) 498
MluCI AATT 7 cut(s) 60, 198, 220, 366, 488, 670, 762
MroXI GAANNNNTTC 1 cut(s) 220
MseI TTAA 1 cut(s) 765
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 115
Mva1269I GAATGC 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 63
NciI CCSGG 1 cut(s) 115
NdeII GATC 3 cut(s) 399, 441, 498
NlaIV GGNNCC 2 cut(s) 112, 353
NmuCI GTSAC 1 cut(s) 794
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 6 cut(s) 32, 157, 163, 216, 640, 735
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 5 cut(s) 68, 191, 531, 697, 806
PspFI CCCAGC 2 cut(s) 69, 106
PspN4I GGNNCC 2 cut(s) 112, 353
PspPI GGNCC 2 cut(s) 111, 226
PstNI CAGNNNCTG 2 cut(s) 286, 810
PsuI RGATCY 1 cut(s) 498
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 5 cut(s) 67, 190, 530, 696, 805
Sau3AI GATC 3 cut(s) 399, 441, 498
Sau96I GGNCC 2 cut(s) 111, 226
ScrFI CCNGG 1 cut(s) 115
SinI GGWCC 2 cut(s) 111, 226
Sse9I AATT 7 cut(s) 60, 198, 220, 366, 488, 670, 762
SsiI CCGC 3 cut(s) 143, 483, 529
SspI AATATT 1 cut(s) 681
SspMI CTAG 4 cut(s) 242, 336, 393, 435
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 23, 658
TaqI TCGA 2 cut(s) 373, 451
TasI AATT 7 cut(s) 60, 198, 220, 366, 488, 670, 762
TauI GCSGC 1 cut(s) 532
TfiI GAWTC 6 cut(s) 32, 157, 163, 216, 640, 735
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 3 cut(s) 28, 451, 663
TseFI GTSAC 1 cut(s) 794
TseI GCWGC 4 cut(s) 66, 189, 695, 804
Tsp45I GTSAC 1 cut(s) 794
TspDTI ATGAA 1 cut(s) 359
TspGWI ACGGA 1 cut(s) 613
TspRI CASTG 3 cut(s) 28, 451, 663
VpaK11BI GGWCC 2 cut(s) 111, 226
XapI RAATTY 1 cut(s) 670
XbaI TCTAGA 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 4 cut(s) 242, 336, 393, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.