Rh6DG285600

Tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003427
Physical Location & Seq
Reverse (-)
48036117 .. 48037121
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG285600.1

Sequence Viewer

Length: 726 bp
ATGGCACTATGGATGGAGAAAGGCGCCGAACCCCAAACCGAAAGCGAAAAGGCTGACCTTGATGCCATCGCCGCCCTCAAAGAGTCTGCTGCTATTGAACTCAAGGAGAAGGGCAACGAGTTTGTGAAAAAGGGTAAGAAGCATTACTCGGACGCCATAGACTGTTACACCAGGGCAATCAATAACCAAGCTTTGAGTGACCCAGAGACGTCTATTCTGTATTCGAATAGAGCCCATGTCAATCTTTTGCTTGGTAATTACAGACGTGCTCTTACTGATGCCGAGGAAGCAATTAGGCTCAGTAACACTAATGTCAAGGCATGTTACCGAGCTGCGAAAGCGTGTTTGTCATTGAACTTGTTGGCTGAATCGATTTCACATTGCAAAAATGGGCTTCAAATTGACCCCAGTAATGAAGGGCTAGAGAAGCTATTAGGGCAGGTTGAGTCAAAGAAGATGGAACTTGAACAGCGTGAGGCTCAAGTCTCCAAAGCTCTTGCTGAGGCTAAGGACATTGTTTCTGCGATTGAAAAAAGAGGCTTGAAGGTTGGGAAGCCAATGTATCAAGACCTTACTGGATCAAGAAAGCCTGTATTGGACAAGAATAGTATTCTTCATTGGCCTGTTCTTCTTTTGTATCCAGAGGTTATGTCGAGTGACTTTATCGAGGATTTCTGTGAGACAGAAATGTTCTCGGCTCATCTTGATATGATATCCTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19 TPR_8

Protein Analysis

241

Amino Acids

26.85

Weight (kDa)

5.52

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Wheel PF18972 200 - 238 1.9e-07 Cns1/TTC4 Wheel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 430
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 586
AcyI GRCGYC 3 cut(s) 24, 153, 209
AgsI TTSAA 6 cut(s) 98, 355, 398, 467, 530, 544
AjiI CACGTC 1 cut(s) 266
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 4 cut(s) 191, 332, 430, 494
AluI AGCT 4 cut(s) 191, 332, 430, 494
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 3 cut(s) 200, 490, 674
AlwI GGATC 1 cut(s) 586
AoxI GGCC 1 cut(s) 620
ApeKI GCWGC 2 cut(s) 89, 332
AspLEI GCGC 1 cut(s) 26
AsuII TTCGAA 1 cut(s) 224
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 271
BbvCI CCTCAGC 1 cut(s) 501
BbvI GCAGC 2 cut(s) 76, 319
BccI CCATC 3 cut(s) 7, 74, 451
BciT130I CCWGG 1 cut(s) 172
BciVI GTATCC 1 cut(s) 648
BcoDI GTCTC 3 cut(s) 200, 490, 674
BfaI CTAG 1 cut(s) 422
BfoI RGCGCY 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 430
BfuI GTATCC 1 cut(s) 648
BisI GCNGC 3 cut(s) 72, 90, 333
BlsI GCNGC 3 cut(s) 73, 91, 334
Bme1390I CCNGG 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 172
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 2 cut(s) 52, 268
BmuI ACTGGG 1 cut(s) 402
Bpu10I CCTNAGC 2 cut(s) 501, 507
Bpu14I TTCGAA 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 86, 465
Bsa29I ATCGAT 1 cut(s) 371
BsaHI GRCGYC 3 cut(s) 24, 153, 209
BsaJI CCNNGG 2 cut(s) 171, 282
Bse1I ACTGG 2 cut(s) 408, 580
Bse3DI GCAATG 1 cut(s) 379
BseBI CCWGG 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 371
BseDI CCNNGG 2 cut(s) 171, 282
BseGI GGATG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 313, 492
BseNI ACTGG 2 cut(s) 408, 580
BseXI GCAGC 2 cut(s) 76, 319
BshFI GGCC 1 cut(s) 622
BshNI GGYRCC 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 271
BsmAI GTCTC 3 cut(s) 200, 490, 674
BsmBI CGTCTC 1 cut(s) 200
BsnI GGCC 1 cut(s) 622
Bsp119I TTCGAA 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 235, 271
Bsp143I GATC 1 cut(s) 578
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 622
BspCNI CTCAG 2 cut(s) 312, 493
BspDI ATCGAT 1 cut(s) 371
BspLI GGNNCC 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 1 cut(s) 586
BspT104I TTCGAA 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 379
BsrI ACTGG 2 cut(s) 408, 580
BssECI CCNNGG 2 cut(s) 171, 282
BssMI GATC 1 cut(s) 578
BssNI GRCGYC 3 cut(s) 24, 153, 209
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 164
BstACI GRCGYC 3 cut(s) 24, 153, 209
BstBI TTCGAA 1 cut(s) 224
BstDEI CTNAG 3 cut(s) 299, 501, 507
BstF5I GGATG 1 cut(s) 18
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 581
BstMAI GTCTC 3 cut(s) 200, 490, 674
BstMBI GATC 1 cut(s) 578
BstMWI GCNNNNNNNGC 5 cut(s) 71, 287, 338, 427, 436
BstNI CCWGG 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 76, 319
Bsu15I ATCGAT 1 cut(s) 371
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 1 cut(s) 622
BsuTUI ATCGAT 1 cut(s) 371
BtgZI GCGATG 1 cut(s) 52
BtrI CACGTC 1 cut(s) 266
BtsCI GGATG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 430
CfoI GCGC 1 cut(s) 26
ClaI ATCGAT 1 cut(s) 371
CseI GACGC 1 cut(s) 161
CviAII CATG 2 cut(s) 236, 321
DdeI CTNAG 3 cut(s) 299, 501, 507
DinI GGCGCC 1 cut(s) 25
DpnI GATC 1 cut(s) 580
DpnII GATC 1 cut(s) 578
Eco24I GRGCYC 1 cut(s) 235
Eco32I GATATC 1 cut(s) 714
EcoRII CCWGG 1 cut(s) 170
EcoRV GATATC 1 cut(s) 714
EcoT38I GRGCYC 1 cut(s) 235
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 2 cut(s) 239, 324
FaiI YATR 6 cut(s) 10, 158, 237, 322, 650, 710
FatI CATG 2 cut(s) 235, 320
Fnu4HI GCNGC 3 cut(s) 72, 90, 333
FokI GGATG 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 3 cut(s) 72, 90, 333
FspBI CTAG 1 cut(s) 422
GlaI GCGC 1 cut(s) 25
GluI GCNGC 3 cut(s) 72, 90, 333
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 1 cut(s) 622
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 3 cut(s) 24, 153, 209
Hin1II CATG 2 cut(s) 239, 324
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 3 cut(s) 83, 368, 446
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 4 cut(s) 566, 582, 641, 704
HpyAV CCTTC 3 cut(s) 103, 410, 538
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 2 cut(s) 209, 265
HpyCH4V TGCA 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 287, 338, 427, 436
HpyF3I CTNAG 3 cut(s) 299, 501, 507
HpySE526I ACGT 2 cut(s) 209, 265
Hsp92I GRCGYC 3 cut(s) 24, 153, 209
Hsp92II CATG 2 cut(s) 239, 324
HspAI GCGC 1 cut(s) 24
KasI GGCGCC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 578
LpnPI CCDG 9 cut(s) 157, 184, 216, 421, 425, 561, 603, 636, 654
Lsp1109I GCAGC 2 cut(s) 76, 319
LweI GCATC 2 cut(s) 52, 268
MaeI CTAG 1 cut(s) 422
MaeII ACGT 2 cut(s) 209, 265
MaeIII GTNAC 5 cut(s) 164, 197, 302, 323, 656
MalI GATC 1 cut(s) 580
MboI GATC 1 cut(s) 578
MboII GAAGA 3 cut(s) 466, 605, 620
MhlI GDGCHC 2 cut(s) 235, 271
MluCI AATT 3 cut(s) 256, 291, 399
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 2 cut(s) 92, 455
MnlI CCTC 7 cut(s) 86, 277, 469, 496, 530, 637, 661
MseI TTAA 1 cut(s) 724
MspR9I CCNGG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 5 cut(s) 71, 287, 338, 427, 436
NarI GGCGCC 1 cut(s) 24
NdeII GATC 1 cut(s) 578
NlaIII CATG 2 cut(s) 239, 324
NlaIV GGNNCC 1 cut(s) 25
NmeAIII GCCGAG 2 cut(s) 307, 674
NmuCI GTSAC 2 cut(s) 197, 656
NspI RCATGY 1 cut(s) 324
NspV TTCGAA 1 cut(s) 224
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 3 cut(s) 73, 91, 334
PleI GAGTC 2 cut(s) 91, 454
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 2 cut(s) 91, 454
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 724
SatI GCNGC 3 cut(s) 72, 90, 333
Sau3AI GATC 1 cut(s) 578
SchI GAGTC 2 cut(s) 92, 455
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 2 cut(s) 235, 271
SfaNI GCATC 2 cut(s) 52, 268
SfoI GGCGCC 1 cut(s) 25
SfuI TTCGAA 1 cut(s) 224
SmlI CTYRAG 2 cut(s) 101, 480
SmoI CTYRAG 2 cut(s) 101, 480
Sse9I AATT 3 cut(s) 256, 291, 399
SsiI CCGC 1 cut(s) 72
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 2 cut(s) 212, 268
TaqI TCGA 4 cut(s) 224, 371, 653, 666
TasI AATT 3 cut(s) 256, 291, 399
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 1 cut(s) 724
Tru9I TTAA 1 cut(s) 724
TseFI GTSAC 2 cut(s) 197, 656
TseI GCWGC 2 cut(s) 89, 332
Tsp45I GTSAC 2 cut(s) 197, 656
TspDTI ATGAA 2 cut(s) 429, 605
XceI RCATGY 1 cut(s) 324
XspI CTAG 1 cut(s) 422
ZraI GACGTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.