Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003427

Physical Location & Seq

Genomic Coordinates Reverse (-)

26671673 .. 26673712

Gene Structure 2040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1174200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTACATTTTGTTGTTTCCTGAACCTTCAAACATGTTTTCAGATAGCTGCCCGCCTTTGTCATGGGATCAGGAACACAATTACACTCGTGATGCTATTGAGTTATACTACGAAGCTGGTTCAGGAGTTTCTCTGTCGAAGACAGAGATCCTTCATTGTCTCCTAGAGGGCACTCCAGCTTCTAATGTGGAAAGCATCAATGGCGAGCAAAAGGATGCCAATGAGAATTCTAATGGTGGCAGCTCAGCAGGAAAAGGTTCCTCTAAATGGGTCAAAGTAAACGAAAAGAGAACACTTCACGACGTTCTGAAAGAACCTAACTTCATCGTTCCAGGGATACCAGTGTTTTATGTTGTTTCTAAACGCTCCAGCTTCCATAAAGAGTTCAAAGCCGGGAACTGGGCTCCTCCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19 TPR_8

Protein Analysis

139

Amino Acids

15.28

Weight (kDa)

5.53

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04130 AT1G04130
fragaria_vesca	FvH4_2g20260 FvH4_2g20260 FvH4_2g20260
malus_domestica	MD05G1186300.v1.1 MD05G1186500.v1.1 MD10G1174200.v1.1 MD10G1174300.v1.1
prunus_persica	Prupe.1G573100_v2.0.a1 Prupe.8G213100_v2.0.a1
pyrus_communis	pycom10g15020 pycom10g15030
rosa_chinensis	RchiOBHm_Chr6g0286031 RchiOBHm_Chr6g0286041
rosa_laevigata	RLG00000012587 RLG00000012588
rosa_multiflora	Rmu_co8274415.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230420 Rroxscaffold_3G00250000 Rroxscaffold_7G00182510
rosa_rugosa	Rorug06G0178400 Rorug06G0178500
rosa_samantha	Rh5CG093800 Rh6AG290400 Rh6AG290500 Rh6BG107700 Rh6BG293900 Rh6BG294000 Rh6CG293400 Rh6CG293500 Rh6DG285500 Rh6DG285600 Rh7CG476900 Rh7DG446100
rosa_wichuraiana	Rw6G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	2 cut(s)	75, 142
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	267, 399
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	2 cut(s)	30, 388
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	5 cut(s)	48, 116, 179, 243, 372
AluI	AGCT	5 cut(s)	48, 116, 179, 243, 372
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	75, 142
ApeKI	GCWGC	2 cut(s)	48, 240
ApoI	RAATTY	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	394
BaeGI	GKGCMC	1 cut(s)	173
BaeI	ACNNNNGTAYC	2 cut(s)	329, 362
BanII	GRGCYC	1 cut(s)	406
BauI	CACGAG	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	35, 252
BciT130I	CCWGG	1 cut(s)	333
BciVI	GTATCC	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	330
BisI	GCNGC	2 cut(s)	49, 241
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	2 cut(s)	50, 242
Bme1390I	CCNGG	2 cut(s)	333, 394
BmiI	GGNNCC	2 cut(s)	259, 405
BmrFI	CCNGG	2 cut(s)	333, 394
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	3 cut(s)	82, 204, 205
BmuI	ACTGGG	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	2 cut(s)	159, 352
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 399
Bse1I	ACTGG	2 cut(s)	341, 404
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	2 cut(s)	267, 399
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	341, 404
BseRI	GAGGAG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	35, 252
BsiSI	CCGG	1 cut(s)	393
BslI	CCNNNNNNNGG	2 cut(s)	267, 399
BsmAI	GTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	173, 406
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	67, 147
Bsp1720I	GCTNAGC	1 cut(s)	244
BspACI	CCGC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	257
BspLI	GGNNCC	2 cut(s)	259, 405
BspPI	GGATC	2 cut(s)	75, 142
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	341, 404
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	2 cut(s)	67, 147
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	53, 206
BstDEI	CTNAG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	2 cut(s)	70, 150
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	67, 147
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	331, 392
BstSLI	GKGCMC	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	35, 252
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	53, 206
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	34, 63
CviJI	RGCY	7 cut(s)	48, 116, 179, 243, 372, 392, 404
CviKI_1	RGCY	7 cut(s)	48, 116, 179, 243, 372, 392, 404
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	2 cut(s)	69, 149
DpnII	GATC	2 cut(s)	67, 147
Eco24I	GRGCYC	1 cut(s)	406
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	406
FaeI	CATG	2 cut(s)	37, 66
FaiI	YATR	5 cut(s)	35, 64, 106, 351, 378
FatI	CATG	2 cut(s)	33, 62
FauI	CCCGC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	49, 241
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	2 cut(s)	49, 241
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	2 cut(s)	49, 241
GsuI	CTGGAG	2 cut(s)	159, 352
HapII	CCGG	1 cut(s)	393
Hin1II	CATG	2 cut(s)	37, 66
HpaII	CCGG	1 cut(s)	393
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	43, 309
Hpy188III	TCNNGA	6 cut(s)	20, 71, 89, 123, 299, 414
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	36, 161
HpyCH4IV	ACGT	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	37, 66
Kzo9I	GATC	2 cut(s)	67, 147
LmnI	GCTCC	2 cut(s)	371, 409
Lsp1109I	GCAGC	2 cut(s)	35, 252
LweI	GCATC	3 cut(s)	82, 204, 205
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	303
MalI	GATC	2 cut(s)	69, 149
MboI	GATC	2 cut(s)	67, 147
MboII	GAAGA	1 cut(s)	151
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	173, 406
MluCI	AATT	2 cut(s)	79, 226
MnlI	CCTC	3 cut(s)	160, 271, 417
MroXI	GAANNNNTTC	1 cut(s)	256
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	2 cut(s)	333, 394
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	67, 147
NlaIII	CATG	2 cut(s)	37, 66
NlaIV	GGNNCC	2 cut(s)	259, 405
NspI	RCATGY	1 cut(s)	37
PciI	ACATGT	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	50, 242
PscI	ACATGT	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	259, 405
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	49, 241
Sau3AI	GATC	2 cut(s)	67, 147
ScrFI	CCNGG	2 cut(s)	333, 394
SduI	GDGCHC	2 cut(s)	173, 406
SetI	ASST	9 cut(s)	28, 50, 118, 181, 245, 259, 306, 319, 374
SfaNI	GCATC	3 cut(s)	82, 204, 205
Sse9I	AATT	2 cut(s)	79, 226
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	331, 392
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	137
TasI	AATT	2 cut(s)	79, 226
TatI	WGTACW	1 cut(s)	3
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	2 cut(s)	48, 240
TspDTI	ATGAA	2 cut(s)	143, 313
TspRI	CASTG	1 cut(s)	348
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.