Rmu_co8274415.1_g000001

Tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8274415.1
OG0003427
Physical Location & Seq
Forward (+)
201 .. 658
458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8274415.1_g000001.1.cds

Sequence Viewer

Length: 384 bp
atggcactatggatggagaaaggcgcccaaccccaaaccgaaagcgaaaaagctgaccttgatgccatcgccgccctcaaagaatctgctgctgttgaactcaaggagaaggggaacgagtttgtgagaaagggtaagaagcattactcggatgccatagactgttacaccagggcaatcaataaccaagctttgagtgacccagagacgtctattctgtattcgaatagagcccatgtcaatcttttgcttggtaattacagacgtgctcttacggatgctgaggaagcaattaggctcagtaacactaatgtcaaggtagtagtagtactgattcttgaacttgttcttagttctcagctgggatttgtctacaaagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19 TPR_8

Protein Analysis

127

Amino Acids

14.12

Weight (kDa)

6.12

Isoelectric Point (pI)

27.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 23
AccI GTMKAC 1 cut(s) 372
AciI CCGC 1 cut(s) 72
AcyI GRCGYC 2 cut(s) 24, 209
AfaI GTAC 1 cut(s) 330
AgsI TTSAA 2 cut(s) 98, 341
AjiI CACGTC 1 cut(s) 266
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 3 cut(s) 53, 191, 361
AluI AGCT 3 cut(s) 53, 191, 361
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 26
AsuII TTCGAA 1 cut(s) 224
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 271
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 76
BccI CCATC 2 cut(s) 7, 74
BciT130I CCWGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 27
BisI GCNGC 2 cut(s) 72, 90
BlsI GCNGC 2 cut(s) 73, 91
BmcAI AGTACT 1 cut(s) 330
Bme1390I CCNGG 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 3 cut(s) 52, 142, 268
Bpu10I CCTNAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 86
BsaHI GRCGYC 2 cut(s) 24, 209
BsaJI CCNNGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 3 cut(s) 18, 157, 283
BseMII CTCAG 3 cut(s) 273, 313, 371
BseXI GCAGC 1 cut(s) 76
BseYI CCCAGC 1 cut(s) 361
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 200
BsmBI CGTCTC 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 235, 271
BspACI CCGC 1 cut(s) 72
BspCNI CTCAG 3 cut(s) 274, 312, 370
BspLI GGNNCC 1 cut(s) 25
BspT104I TTCGAA 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 171
BssNI GRCGYC 2 cut(s) 24, 209
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 164
BstACI GRCGYC 2 cut(s) 24, 209
BstBI TTCGAA 1 cut(s) 224
BstDEI CTNAG 4 cut(s) 282, 299, 350, 357
BstF5I GGATG 3 cut(s) 18, 157, 283
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstMAI GTCTC 1 cut(s) 200
BstMWI GCNNNNNNNGC 2 cut(s) 71, 287
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 76
BtgZI GCGATG 1 cut(s) 52
BtrI CACGTC 1 cut(s) 266
BtsCI GGATG 3 cut(s) 18, 157, 283
CfoI GCGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 329
CviAII CATG 1 cut(s) 236
CviJI RGCY 5 cut(s) 53, 191, 233, 298, 361
CviKI_1 RGCY 5 cut(s) 53, 191, 233, 298, 361
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 4 cut(s) 282, 299, 350, 357
DinI GGCGCC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 235
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 1 cut(s) 239
FaiI YATR 3 cut(s) 10, 158, 237
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 1 cut(s) 235
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 72, 90
FokI GGATG 3 cut(s) 25, 164, 290
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 2 cut(s) 72, 90
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 72, 90
GsaI CCCAGC 1 cut(s) 365
HaeII RGCGCY 1 cut(s) 27
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 2 cut(s) 24, 209
Hin1II CATG 1 cut(s) 239
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 2 cut(s) 83, 334
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 2 cut(s) 209, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 287
HpyF3I CTNAG 4 cut(s) 282, 299, 350, 357
HpySE526I ACGT 2 cut(s) 209, 265
Hsp92I GRCGYC 2 cut(s) 24, 209
Hsp92II CATG 1 cut(s) 239
HspAI GCGC 1 cut(s) 24
KasI GGCGCC 1 cut(s) 23
LpnPI CCDG 4 cut(s) 157, 184, 216, 347
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 3 cut(s) 52, 142, 268
MaeII ACGT 2 cut(s) 209, 265
MaeIII GTNAC 3 cut(s) 164, 197, 302
MhlI GDGCHC 2 cut(s) 235, 271
MluCI AATT 2 cut(s) 256, 291
Mly113I GGCGCC 1 cut(s) 24
MnlI CCTC 2 cut(s) 86, 277
MroXI GAANNNNTTC 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 361
MspR9I CCNGG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 2 cut(s) 71, 287
NarI GGCGCC 1 cut(s) 24
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 197
NspV TTCGAA 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 2 cut(s) 83, 334
PkrI GCNGC 2 cut(s) 73, 91
PluTI GGCGCC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 361
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SatI GCNGC 2 cut(s) 72, 90
ScaI AGTACT 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 2 cut(s) 235, 271
SetI ASST 7 cut(s) 55, 60, 193, 212, 268, 321, 363
SfaNI GCATC 3 cut(s) 52, 142, 268
SfoI GGCGCC 1 cut(s) 25
SfuI TTCGAA 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 256, 291
SsiI CCGC 1 cut(s) 72
SspDI GGCGCC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 2 cut(s) 212, 268
TaqI TCGA 1 cut(s) 224
TasI AATT 2 cut(s) 256, 291
TatI WGTACW 1 cut(s) 328
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 83, 334
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 345
ZraI GACGTC 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.