Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003427

Physical Location & Seq

Genomic Coordinates Reverse (-)

47121416 .. 47123304

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG293400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTTTTCAGAAAGCGCCCCGCCTTTGCCGTGGGATGAGAAACACAATTATACTCGTGATGCTGTTGAACTATTCTATGAAGCTAAATCAGGAGTTCCACTGTCAAAGACGAAGATTCTTCGTTGTCTCCTAGAGGGAACTCCAGCATCCAATCTGGAAAGCATGGTTCAGGAAAAAGATGCAGCTGAAAATTCTAATTTTGGCAGCTCAGCTGGCAAAGGTTCCTCTAGATGGGTCAAAGTAAATGAGAAAAGAACCCTTTATGATATTCTGAAAGAAGCTAATTTCATTATTCAAGGGATCCCAGTGTTCGCTGTTGTTTCTAAAAAATCCAGCTTCTACAAAGAGTTCAAAGCTGGGGGCTGGGCTCTTCCAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19 TPR_8

Protein Analysis

126

Amino Acids

13.96

Weight (kDa)

8.64

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04130 AT1G04130
fragaria_vesca	FvH4_2g20260 FvH4_2g20260 FvH4_2g20260
malus_domestica	MD05G1186300.v1.1 MD05G1186500.v1.1 MD10G1174200.v1.1 MD10G1174300.v1.1
prunus_persica	Prupe.1G573100_v2.0.a1 Prupe.8G213100_v2.0.a1
pyrus_communis	pycom10g15020 pycom10g15030
rosa_chinensis	RchiOBHm_Chr6g0286031 RchiOBHm_Chr6g0286041
rosa_laevigata	RLG00000012587 RLG00000012588
rosa_multiflora	Rmu_co8274415.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230420 Rroxscaffold_3G00250000 Rroxscaffold_7G00182510
rosa_rugosa	Rorug06G0178400 Rorug06G0178500
rosa_samantha	Rh5CG093800 Rh6AG290400 Rh6AG290500 Rh6BG107700 Rh6BG293900 Rh6BG294000 Rh6CG293400 Rh6CG293500 Rh6DG285500 Rh6DG285600 Rh7CG476900 Rh7DG446100
rosa_wichuraiana	Rw6G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	2 cut(s)	295, 308
AcsI	RAATTY	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	68, 296, 352
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	7 cut(s)	83, 185, 207, 212, 281, 336, 356
AluI	AGCT	7 cut(s)	83, 185, 207, 212, 281, 336, 356
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	2 cut(s)	295, 308
ApeKI	GCWGC	2 cut(s)	182, 204
ApoI	RAATTY	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	370
BauI	CACGAG	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	194, 216
BccI	CCATC	1 cut(s)	225
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	131, 228
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	2 cut(s)	183, 205
BlpI	GCTNAGC	1 cut(s)	208
BlsI	GCNGC	2 cut(s)	184, 206
Bme1390I	CCNGG	1 cut(s)	375
BmiI	GGNNCC	2 cut(s)	223, 302
BmrFI	CCNGG	1 cut(s)	375
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	3 cut(s)	49, 155, 169
BmuI	ACTGGG	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	29, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	29, 374
BseGI	GGATG	2 cut(s)	40, 146
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	2 cut(s)	194, 216
BseYI	CCCAGC	2 cut(s)	356, 363
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	1 cut(s)	300
Bsp1720I	GCTNAGC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	223, 302
BspPI	GGATC	2 cut(s)	295, 308
BspQI	GCTCTTC	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	29, 374
BssMI	GATC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	102
Bst6I	CTCTTC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	1 cut(s)	208
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	40, 146
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	194, 216
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	40, 146
BtsIMutI	CAGTG	2 cut(s)	98, 312
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	17
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	9 cut(s)	83, 185, 207, 212, 281, 336, 356, 363, 368
CviKI_1	RGCY	9 cut(s)	83, 185, 207, 212, 281, 336, 356, 363, 368
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	370
FaeI	CATG	1 cut(s)	166
FaiI	YATR	4 cut(s)	51, 78, 164, 264
FatI	CATG	1 cut(s)	162
FauI	CCCGC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	183, 205
FokI	GGATG	2 cut(s)	47, 133
FriOI	GRGCYC	1 cut(s)	370
Fsp4HI	GCNGC	2 cut(s)	183, 205
FspBI	CTAG	2 cut(s)	131, 228
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	2 cut(s)	183, 205
GsaI	CCCAGC	2 cut(s)	360, 367
GsuI	CTGGAG	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	18
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	10, 273
Hpy188III	TCNNGA	5 cut(s)	56, 90, 155, 170, 228
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	1 cut(s)	208
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	300
LguI	GCTCTTC	1 cut(s)	375
Lsp1109I	GCAGC	2 cut(s)	194, 216
LweI	GCATC	3 cut(s)	49, 155, 169
MaeI	CTAG	2 cut(s)	131, 228
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	3 cut(s)	110, 124, 362
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	4 cut(s)	46, 190, 196, 283
MnlI	CCTC	2 cut(s)	127, 235
MspA1I	CMGCKG	2 cut(s)	185, 212
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	213
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	2 cut(s)	223, 302
PciSI	GCTCTTC	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	184, 206
Psp6I	CCWGG	1 cut(s)	373
PspFI	CCCAGC	2 cut(s)	356, 363
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	223, 302
PsuI	RGATCY	1 cut(s)	300
PvuII	CAGCTG	2 cut(s)	185, 212
SapI	GCTCTTC	1 cut(s)	375
SatI	GCNGC	2 cut(s)	183, 205
Sau3AI	GATC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	8 cut(s)	85, 187, 209, 214, 223, 283, 338, 358
SfaNI	GCATC	3 cut(s)	49, 155, 169
Sse9I	AATT	4 cut(s)	46, 190, 196, 283
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	2 cut(s)	131, 228
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	102
TasI	AATT	4 cut(s)	46, 190, 196, 283
TfiI	GAWTC	1 cut(s)	115
TscAI	CASTG	2 cut(s)	105, 312
TseI	GCWGC	2 cut(s)	182, 204
TspDTI	ATGAA	2 cut(s)	93, 277
TspRI	CASTG	2 cut(s)	105, 312
XapI	RAATTY	1 cut(s)	190
XbaI	TCTAGA	1 cut(s)	227
XspI	CTAG	2 cut(s)	131, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.