Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003427

Physical Location & Seq

Genomic Coordinates Forward (+)

21605610 .. 21609075

Gene Structure 3466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00182510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCACTATGGATGGAGAAAGGCGCCGAACCCCAAACCGAAAGCGAAAAAGCTGACCTTGATGCCATCGCCGCCCTCAAAGAGTCTGCTGCTATTGAACTCAAGGAGAAGGGGAACGAGTTTGTGAAAAAGGGTAAGAAGCATTACTCGGATGCCATAGACTGTTACACCAGGGCAATCAATAACCAAGCTTTGAGTGACCCAGAGACGTCTATTCTGTATTCCAATAGAGCCCATGTCAATCTTTTGCTTGGTAATTACAGACGTGCTCTTACTGATGCTGAGGAAGCAATTAGGCTCAGTAAAACTAATGTCAAGGCATTTTACCGAGCTGCGAAAGCGTGTTTGTCATTGAACTTGTTGGCTGAATCGATTTCACATTGCAAAAATGGGCTTCAAATTGACCCCAGTAATGAAGGGCTAGGGAAGCTATTAGGGCAGGTTGAGTCTAAGAAGATGGAACTTGAACAGCGTGAGGCTCAAGTCTCCACAGCTCTTACTGAGGCTAAGGACATTGTTTCTGCGATTGAAAAAAGAGGCTTGAAGGTTGGGAAGCCAATGTATCAAGAACTTACTGGACCGAGAAAGCCTGTATTGGACAAGAATAGTATTCTTCATTGGCCTGTTCTTCTTTTCGCCCCGCCTTTGCCATGGGACCAGGAACACAATTATACTCGTGATGCTGTTGAACTATACTATGAAGCTAAATCAGGAGTTCCACTGTCAAAGACGAAGATTCTTCGTTGTCTCCTAGAGGGAACTCCAGCATCCAATCTGGAAAGCATGGTTGAGGAAAAAGATGCAACTGAAAATTCTAATTTTGGCAGCTCAGCAGGCAAAGGTTCCTCTAGATGGGTCAAAGTAAATGAGAAAAGAACCCTTTATGATATCCTGAAAGAAGCTAATTTCATTATTCAAGGGATCCCAGTGTTCGCTGTTGTTTCTGAAAAATCCAGCTTCTACAAAGAGTTCAAAGCCGGGGGCTGGGCGCTTCCAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19 TPR_8

Protein Analysis

333

Amino Acids

36.92

Weight (kDa)

7.61

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04130 AT1G04130
fragaria_vesca	FvH4_2g20260 FvH4_2g20260 FvH4_2g20260
malus_domestica	MD05G1186300.v1.1 MD05G1186500.v1.1 MD10G1174200.v1.1 MD10G1174300.v1.1
prunus_persica	Prupe.1G573100_v2.0.a1 Prupe.8G213100_v2.0.a1
pyrus_communis	pycom10g15020 pycom10g15030
rosa_chinensis	RchiOBHm_Chr6g0286031 RchiOBHm_Chr6g0286041
rosa_laevigata	RLG00000012587 RLG00000012588
rosa_multiflora	Rmu_co8274415.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230420 Rroxscaffold_3G00250000 Rroxscaffold_7G00182510
rosa_rugosa	Rorug06G0178400 Rorug06G0178500
rosa_samantha	Rh5CG093800 Rh6AG290400 Rh6AG290500 Rh6BG107700 Rh6BG293900 Rh6BG294000 Rh6CG293400 Rh6CG293500 Rh6DG285500 Rh6DG285600 Rh7CG476900 Rh7DG446100
rosa_wichuraiana	Rw6G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	2 cut(s)	72, 641
AclWI	GGATC	2 cut(s)	916, 929
AcsI	RAATTY	1 cut(s)	811
AcyI	GRCGYC	2 cut(s)	24, 209
AfiI	CCNNNNNNNGG	2 cut(s)	852, 984
AgsI	TTSAA	9 cut(s)	98, 355, 398, 467, 530, 544, 689, 917, 973
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	3 cut(s)	170, 657, 994
AluBI	AGCT	9 cut(s)	53, 191, 332, 430, 494, 704, 828, 902, 957
AluI	AGCT	9 cut(s)	53, 191, 332, 430, 494, 704, 828, 902, 957
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	3 cut(s)	200, 490, 752
AlwI	GGATC	2 cut(s)	916, 929
AoxI	GGCC	1 cut(s)	620
ApeKI	GCWGC	3 cut(s)	89, 332, 825
ApoI	RAATTY	1 cut(s)	811
AspLEI	GCGC	2 cut(s)	26, 991
AspS9I	GGNCC	2 cut(s)	578, 655
AsuC2I	CCSGG	1 cut(s)	979
AvaII	GGWCC	2 cut(s)	578, 655
BamHI	GGATCC	1 cut(s)	921
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	235
BauI	CACGAG	1 cut(s)	675
Bbv12I	GWGCWC	1 cut(s)	271
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	76, 319, 837
BccI	CCATC	4 cut(s)	7, 74, 451, 846
BciT130I	CCWGG	3 cut(s)	172, 659, 996
BcnI	CCSGG	1 cut(s)	979
BcoDI	GTCTC	3 cut(s)	200, 490, 752
BfaI	CTAG	3 cut(s)	422, 752, 849
BfoI	RGCGCY	2 cut(s)	27, 992
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	4 cut(s)	72, 90, 333, 826
BlpI	GCTNAGC	1 cut(s)	829
BlsI	GCNGC	4 cut(s)	73, 91, 334, 827
Bme1390I	CCNGG	4 cut(s)	172, 659, 979, 996
Bme18I	GGWCC	2 cut(s)	578, 655
BmgBI	CACGTC	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	578, 655
BmiI	GGNNCC	4 cut(s)	25, 656, 844, 923
BmrFI	CCNGG	4 cut(s)	172, 659, 979, 996
BmrI	ACTGGG	2 cut(s)	402, 920
BmsI	GCATC	6 cut(s)	52, 142, 268, 670, 776, 790
BmuI	ACTGGG	2 cut(s)	402, 920
BpmI	CTGGAG	1 cut(s)	747
Bpu10I	CCTNAGC	2 cut(s)	282, 507
Bpu1102I	GCTNAGC	1 cut(s)	829
BpuEI	CTTGAG	2 cut(s)	86, 465
BpuMI	CCSGG	1 cut(s)	979
Bsa29I	ATCGAT	1 cut(s)	371
BsaHI	GRCGYC	2 cut(s)	24, 209
BsaJI	CCNNGG	4 cut(s)	171, 650, 978, 995
Bsc4I	CCNNNNNNNGG	2 cut(s)	852, 984
Bse1I	ACTGG	3 cut(s)	408, 580, 926
Bse3DI	GCAATG	1 cut(s)	379
BseBI	CCWGG	3 cut(s)	172, 659, 996
BseCI	ATCGAT	1 cut(s)	371
BseDI	CCNNGG	4 cut(s)	171, 650, 978, 995
BseGI	GGATG	3 cut(s)	18, 157, 767
BseLI	CCNNNNNNNGG	2 cut(s)	852, 984
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	4 cut(s)	273, 313, 492, 843
BseNI	ACTGG	3 cut(s)	408, 580, 926
BseXI	GCAGC	3 cut(s)	76, 319, 837
BseYI	CCCAGC	1 cut(s)	984
BshFI	GGCC	1 cut(s)	622
BshNI	GGYRCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	978
BslFI	GGGAC	1 cut(s)	668
BslI	CCNNNNNNNGG	2 cut(s)	852, 984
BsmAI	GTCTC	3 cut(s)	200, 490, 752
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	668
BsnI	GGCC	1 cut(s)	622
Bsp1286I	GDGCHC	2 cut(s)	235, 271
Bsp143I	GATC	1 cut(s)	921
Bsp1720I	GCTNAGC	1 cut(s)	829
Bsp19I	CCATGG	1 cut(s)	650
BspACI	CCGC	2 cut(s)	72, 641
BspANI	GGCC	1 cut(s)	622
BspCNI	CTCAG	4 cut(s)	274, 312, 493, 842
BspDI	ATCGAT	1 cut(s)	371
BspLI	GGNNCC	4 cut(s)	25, 656, 844, 923
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	916, 929
BspT107I	GGYRCC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	379
BsrI	ACTGG	3 cut(s)	408, 580, 926
BssECI	CCNNGG	4 cut(s)	171, 650, 978, 995
BssMI	GATC	1 cut(s)	921
BssNI	GRCGYC	2 cut(s)	24, 209
BssSI	CACGAG	1 cut(s)	675
BssT1I	CCWWGG	1 cut(s)	650
Bst2BI	CACGAG	1 cut(s)	675
Bst2UI	CCWGG	3 cut(s)	172, 659, 996
Bst4CI	ACNGT	2 cut(s)	164, 723
BstACI	GRCGYC	2 cut(s)	24, 209
BstC8I	GCNNGC	1 cut(s)	835
BstDEI	CTNAG	6 cut(s)	282, 299, 450, 501, 507, 829
BstDSI	CCRYGG	1 cut(s)	650
BstF5I	GGATG	3 cut(s)	18, 157, 767
BstH2I	RGCGCY	2 cut(s)	27, 992
BstHHI	GCGC	2 cut(s)	26, 991
BstKTI	GATC	1 cut(s)	924
BstMAI	GTCTC	3 cut(s)	200, 490, 752
BstMBI	GATC	1 cut(s)	921
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 287, 338, 427, 436, 834
BstNI	CCWGG	3 cut(s)	172, 659, 996
BstSCI	CCNGG	4 cut(s)	170, 657, 977, 994
BstV1I	GCAGC	3 cut(s)	76, 319, 837
BstX2I	RGATCY	1 cut(s)	921
BstYI	RGATCY	1 cut(s)	921
Bsu15I	ATCGAT	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	622
BsuTUI	ATCGAT	1 cut(s)	371
BtgI	CCRYGG	1 cut(s)	650
BtgZI	GCGATG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	266
BtsCI	GGATG	3 cut(s)	18, 157, 767
BtsIMutI	CAGTG	2 cut(s)	719, 933
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	835
CfoI	GCGC	2 cut(s)	26, 991
Cfr13I	GGNCC	2 cut(s)	578, 655
ClaI	ATCGAT	1 cut(s)	371
CviAII	CATG	3 cut(s)	236, 651, 784
DdeI	CTNAG	6 cut(s)	282, 299, 450, 501, 507, 829
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	1 cut(s)	923
DpnII	GATC	1 cut(s)	921
Eco130I	CCWWGG	1 cut(s)	650
Eco24I	GRGCYC	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	889
Eco47I	GGWCC	2 cut(s)	578, 655
EcoRII	CCWGG	3 cut(s)	170, 657, 994
EcoRV	GATATC	1 cut(s)	889
EcoT14I	CCWWGG	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	235
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	650
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	3 cut(s)	239, 654, 787
FaiI	YATR	9 cut(s)	10, 158, 237, 652, 672, 694, 699, 785, 885
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	1 cut(s)	668
FatI	CATG	3 cut(s)	235, 650, 783
FauI	CCCGC	1 cut(s)	648
Fnu4HI	GCNGC	4 cut(s)	72, 90, 333, 826
FokI	GGATG	3 cut(s)	25, 164, 754
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	4 cut(s)	72, 90, 333, 826
FspBI	CTAG	3 cut(s)	422, 752, 849
GlaI	GCGC	2 cut(s)	25, 990
GluI	GCNGC	4 cut(s)	72, 90, 333, 826
GsaI	CCCAGC	1 cut(s)	988
GsuI	CTGGAG	1 cut(s)	747
HaeII	RGCGCY	2 cut(s)	27, 992
HaeIII	GGCC	1 cut(s)	622
HapII	CCGG	1 cut(s)	978
HhaI	GCGC	2 cut(s)	26, 991
Hin1I	GRCGYC	2 cut(s)	24, 209
Hin1II	CATG	3 cut(s)	239, 654, 787
Hin6I	GCGC	2 cut(s)	24, 989
HinP1I	GCGC	2 cut(s)	24, 989
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	4 cut(s)	83, 368, 446, 736
HpaII	CCGG	1 cut(s)	978
Hpy188I	TCNGA	2 cut(s)	151, 946
Hpy188III	TCNNGA	6 cut(s)	566, 677, 711, 776, 849, 892
HpyAV	CCTTC	3 cut(s)	103, 410, 538
HpyCH4III	ACNGT	2 cut(s)	164, 723
HpyCH4IV	ACGT	2 cut(s)	209, 265
HpyCH4V	TGCA	2 cut(s)	384, 803
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 287, 338, 427, 436, 834
HpyF3I	CTNAG	6 cut(s)	282, 299, 450, 501, 507, 829
HpySE526I	ACGT	2 cut(s)	209, 265
Hsp92I	GRCGYC	2 cut(s)	24, 209
Hsp92II	CATG	3 cut(s)	239, 654, 787
HspAI	GCGC	2 cut(s)	24, 989
KasI	GGCGCC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	921
Lsp1109I	GCAGC	3 cut(s)	76, 319, 837
LweI	GCATC	6 cut(s)	52, 142, 268, 670, 776, 790
MaeI	CTAG	3 cut(s)	422, 752, 849
MaeII	ACGT	2 cut(s)	209, 265
MaeIII	GTNAC	2 cut(s)	164, 197
MalI	GATC	1 cut(s)	923
MboI	GATC	1 cut(s)	921
MboII	GAAGA	5 cut(s)	466, 605, 620, 731, 745
MflI	RGATCY	1 cut(s)	921
MhlI	GDGCHC	2 cut(s)	235, 271
MluCI	AATT	7 cut(s)	256, 291, 399, 667, 811, 817, 904
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	2 cut(s)	92, 455
MnlI	CCTC	8 cut(s)	86, 277, 469, 496, 530, 748, 784, 856
MspI	CCGG	1 cut(s)	978
MspR9I	CCNGG	4 cut(s)	172, 659, 979, 996
MvaI	CCWGG	3 cut(s)	172, 659, 996
MwoI	GCNNNNNNNGC	6 cut(s)	71, 287, 338, 427, 436, 834
NarI	GGCGCC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	979
NcoI	CCATGG	1 cut(s)	650
NdeII	GATC	1 cut(s)	921
NlaIII	CATG	3 cut(s)	239, 654, 787
NlaIV	GGNNCC	4 cut(s)	25, 656, 844, 923
NmuCI	GTSAC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	368, 736
PkrI	GCNGC	4 cut(s)	73, 91, 334, 827
PleI	GAGTC	2 cut(s)	91, 454
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	2 cut(s)	91, 454
Psp6I	CCWGG	3 cut(s)	170, 657, 994
PspFI	CCCAGC	1 cut(s)	984
PspGI	CCWGG	3 cut(s)	170, 657, 994
PspN4I	GGNNCC	4 cut(s)	25, 656, 844, 923
PspPI	GGNCC	2 cut(s)	578, 655
PsuI	RGATCY	1 cut(s)	921
SatI	GCNGC	4 cut(s)	72, 90, 333, 826
Sau3AI	GATC	1 cut(s)	921
Sau96I	GGNCC	2 cut(s)	578, 655
SchI	GAGTC	2 cut(s)	92, 455
ScrFI	CCNGG	4 cut(s)	172, 659, 979, 996
SduI	GDGCHC	2 cut(s)	235, 271
SfaNI	GCATC	6 cut(s)	52, 142, 268, 670, 776, 790
SfoI	GGCGCC	1 cut(s)	25
SinI	GGWCC	2 cut(s)	578, 655
SmlI	CTYRAG	2 cut(s)	101, 480
SmoI	CTYRAG	2 cut(s)	101, 480
Sse9I	AATT	7 cut(s)	256, 291, 399, 667, 811, 817, 904
SsiI	CCGC	2 cut(s)	72, 641
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	3 cut(s)	422, 752, 849
StyD4I	CCNGG	4 cut(s)	170, 657, 977, 994
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	2 cut(s)	164, 723
TaiI	ACGT	2 cut(s)	212, 268
TaqI	TCGA	1 cut(s)	371
TaqII	GACCGA	1 cut(s)	595
TasI	AATT	7 cut(s)	256, 291, 399, 667, 811, 817, 904
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	368, 736
TscAI	CASTG	2 cut(s)	726, 933
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	3 cut(s)	89, 332, 825
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	4 cut(s)	429, 605, 714, 898
TspRI	CASTG	2 cut(s)	726, 933
VpaK11BI	GGWCC	2 cut(s)	578, 655
XapI	RAATTY	1 cut(s)	811
XbaI	TCTAGA	1 cut(s)	848
XspI	CTAG	3 cut(s)	422, 752, 849
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.