Rh6AG290500

Tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003427
Physical Location & Seq
Reverse (-)
48746329 .. 48747333
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG290500.1

Sequence Viewer

Length: 726 bp
ATGGCACTATGGATGGAGAAAGGCGCCGAACCCCAAACCGAAAGCGAAAAAGCTGACCTTGATGCCATCGCCGCCCTCAAAGAATCTGCTGCTATTGAACTCAAGGAGAAGGGGAACGAGTTTGTGAAAAAGGGTAAGAAGCATTACTCGGATGCCATAGACTGTTACACCAGGGCAATCAATAACCAAGCTTTGAGCGACCCAGAGACGTCCATTCTGTATTCGAATAGAGCCCATGTCAATCTTTTGCTTGGTAATTACAGACGTGCTCTTACGGATGCTGAGGAAGCAATTAGGCTCAGTAACACTAATGTCAAGGAATTTTACCGAGCTGCGAAAGCGTGTTTGTCATTGAACTTGTTGGCTGAATCGATTTCACATTGCAAAAATGGGCTTCAAATTGACCCCAGTAATGAAGGGCTAGAGAAGCTATTAGGGCAGGTTGAGTCAAAGAAGATGGAACTTGAACAGCGCGAGGCTCAAGTCTCCAAAGCTCTTACTGAGGCTAAGGACATTGTTTCTGCGATTGAAAAAAGAGGCTTGAAGGTTGGGAAGCCAATGTATCAAGAACTTACTGGATCAAGAAAGCCTGTATTGGACAAGAATAGTATTCTTCATTGGCCTGTTCTTCTTTTGTATCCAGAGGTTATGTCGAGTGACTTTATCGAGGATTTCTGTGAGACGGAAATGTTCTCAGCTCATCTTGATATGATATCCTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19 TPR_8

Protein Analysis

241

Amino Acids

27.0

Weight (kDa)

5.41

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Wheel PF18972 200 - 238 1.9e-07 Cns1/TTC4 Wheel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 430
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 1 cut(s) 474
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 586
AcsI RAATTY 1 cut(s) 320
AcyI GRCGYC 2 cut(s) 24, 209
AgsI TTSAA 6 cut(s) 98, 355, 398, 467, 530, 544
AjiI CACGTC 1 cut(s) 266
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 6 cut(s) 53, 191, 332, 430, 494, 698
AluI AGCT 6 cut(s) 53, 191, 332, 430, 494, 698
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 3 cut(s) 200, 490, 674
AlwI GGATC 1 cut(s) 586
AoxI GGCC 1 cut(s) 620
ApeKI GCWGC 2 cut(s) 89, 332
ApoI RAATTY 1 cut(s) 320
AspLEI GCGC 2 cut(s) 26, 474
AsuII TTCGAA 1 cut(s) 224
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 271
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 76, 319
BccI CCATC 3 cut(s) 7, 74, 451
BciT130I CCWGG 1 cut(s) 172
BciVI GTATCC 1 cut(s) 648
BcoDI GTCTC 3 cut(s) 200, 490, 674
BfaI CTAG 1 cut(s) 422
BfoI RGCGCY 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 430
BfuI GTATCC 1 cut(s) 648
BisI GCNGC 3 cut(s) 72, 90, 333
BlsI GCNGC 3 cut(s) 73, 91, 334
Bme1390I CCNGG 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 172
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 3 cut(s) 52, 142, 268
BmuI ACTGGG 1 cut(s) 402
Bpu10I CCTNAGC 2 cut(s) 282, 507
Bpu14I TTCGAA 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 86, 465
Bsa29I ATCGAT 1 cut(s) 371
BsaHI GRCGYC 2 cut(s) 24, 209
BsaJI CCNNGG 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 408, 580
Bse3DI GCAATG 1 cut(s) 379
BseBI CCWGG 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 3 cut(s) 18, 157, 283
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 4 cut(s) 273, 313, 492, 708
BseNI ACTGG 2 cut(s) 408, 580
BseXI GCAGC 2 cut(s) 76, 319
Bsh1236I CGCG 1 cut(s) 474
BshFI GGCC 1 cut(s) 622
BshNI GGYRCC 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 271
BsmAI GTCTC 3 cut(s) 200, 490, 674
BsmBI CGTCTC 2 cut(s) 200, 674
BsnI GGCC 1 cut(s) 622
Bsp119I TTCGAA 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 235, 271
Bsp143I GATC 1 cut(s) 578
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 622
BspCNI CTCAG 4 cut(s) 274, 312, 493, 707
BspDI ATCGAT 1 cut(s) 371
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 1 cut(s) 586
BspT104I TTCGAA 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 379
BsrI ACTGG 2 cut(s) 408, 580
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 578
BssNI GRCGYC 2 cut(s) 24, 209
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 164
BstACI GRCGYC 2 cut(s) 24, 209
BstBI TTCGAA 1 cut(s) 224
BstDEI CTNAG 5 cut(s) 282, 299, 501, 507, 694
BstF5I GGATG 3 cut(s) 18, 157, 283
BstFNI CGCG 1 cut(s) 474
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 2 cut(s) 26, 474
BstKTI GATC 1 cut(s) 581
BstMAI GTCTC 3 cut(s) 200, 490, 674
BstMBI GATC 1 cut(s) 578
BstMWI GCNNNNNNNGC 5 cut(s) 71, 287, 338, 427, 436
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 2 cut(s) 76, 319
Bsu15I ATCGAT 1 cut(s) 371
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 1 cut(s) 622
BsuTUI ATCGAT 1 cut(s) 371
BtgZI GCGATG 1 cut(s) 52
BtrI CACGTC 1 cut(s) 266
BtsCI GGATG 3 cut(s) 18, 157, 283
BveI ACCTGC 1 cut(s) 430
CfoI GCGC 2 cut(s) 26, 474
ClaI ATCGAT 1 cut(s) 371
CviAII CATG 1 cut(s) 236
DdeI CTNAG 5 cut(s) 282, 299, 501, 507, 694
DinI GGCGCC 1 cut(s) 25
DpnI GATC 1 cut(s) 580
DpnII GATC 1 cut(s) 578
Eco24I GRGCYC 1 cut(s) 235
Eco32I GATATC 1 cut(s) 714
EcoRII CCWGG 1 cut(s) 170
EcoRV GATATC 1 cut(s) 714
EcoT38I GRGCYC 1 cut(s) 235
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
Esp3I CGTCTC 2 cut(s) 200, 674
FaeI CATG 1 cut(s) 239
FaiI YATR 5 cut(s) 10, 158, 237, 650, 710
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 72, 90, 333
FokI GGATG 3 cut(s) 25, 164, 290
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 3 cut(s) 72, 90, 333
FspBI CTAG 1 cut(s) 422
GlaI GCGC 2 cut(s) 25, 473
GluI GCNGC 3 cut(s) 72, 90, 333
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 1 cut(s) 622
HhaI GCGC 2 cut(s) 26, 474
Hin1I GRCGYC 2 cut(s) 24, 209
Hin1II CATG 1 cut(s) 239
Hin6I GCGC 2 cut(s) 24, 472
HinP1I GCGC 2 cut(s) 24, 472
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 3 cut(s) 83, 368, 446
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 4 cut(s) 566, 582, 641, 704
HpyAV CCTTC 3 cut(s) 103, 410, 538
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 2 cut(s) 209, 265
HpyCH4V TGCA 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 287, 338, 427, 436
HpyF3I CTNAG 5 cut(s) 282, 299, 501, 507, 694
HpySE526I ACGT 2 cut(s) 209, 265
Hsp92I GRCGYC 2 cut(s) 24, 209
Hsp92II CATG 1 cut(s) 239
HspAI GCGC 2 cut(s) 24, 472
KasI GGCGCC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 578
LpnPI CCDG 9 cut(s) 157, 184, 216, 421, 425, 561, 603, 636, 654
Lsp1109I GCAGC 2 cut(s) 76, 319
LweI GCATC 3 cut(s) 52, 142, 268
MaeI CTAG 1 cut(s) 422
MaeII ACGT 2 cut(s) 209, 265
MaeIII GTNAC 3 cut(s) 164, 302, 656
MalI GATC 1 cut(s) 580
MboI GATC 1 cut(s) 578
MboII GAAGA 3 cut(s) 466, 605, 620
MhlI GDGCHC 2 cut(s) 235, 271
MluCI AATT 4 cut(s) 256, 291, 320, 399
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 1 cut(s) 455
MnlI CCTC 7 cut(s) 86, 277, 469, 496, 530, 637, 661
MseI TTAA 1 cut(s) 724
MspR9I CCNGG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 172
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 5 cut(s) 71, 287, 338, 427, 436
NarI GGCGCC 1 cut(s) 24
NdeII GATC 1 cut(s) 578
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 656
NspV TTCGAA 1 cut(s) 224
PfeI GAWTC 2 cut(s) 83, 368
PkrI GCNGC 3 cut(s) 73, 91, 334
PleI GAGTC 1 cut(s) 454
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 724
SatI GCNGC 3 cut(s) 72, 90, 333
Sau3AI GATC 1 cut(s) 578
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 2 cut(s) 235, 271
SfaNI GCATC 3 cut(s) 52, 142, 268
SfoI GGCGCC 1 cut(s) 25
SfuI TTCGAA 1 cut(s) 224
SmlI CTYRAG 2 cut(s) 101, 480
SmoI CTYRAG 2 cut(s) 101, 480
Sse9I AATT 4 cut(s) 256, 291, 320, 399
SsiI CCGC 1 cut(s) 72
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 2 cut(s) 212, 268
TaqI TCGA 4 cut(s) 224, 371, 653, 666
TasI AATT 4 cut(s) 256, 291, 320, 399
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 83, 368
Tru1I TTAA 1 cut(s) 724
Tru9I TTAA 1 cut(s) 724
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 2 cut(s) 89, 332
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 2 cut(s) 429, 605
TspGWI ACGGA 2 cut(s) 290, 698
XapI RAATTY 1 cut(s) 320
XspI CTAG 1 cut(s) 422
ZraI GACGTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.