Rorug06G0178500

Tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003427
Physical Location & Seq
Forward (+)
28191941 .. 28216013
24073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0178500.1

Sequence Viewer

Length: 2940 bp
ATGGCGTTTCACGGCGCTTCACGCCGTGTCCTATCATCGCTGCCATCTCTCAGCAGCAGAGCCAGGTACTACCCAATGCTTCACCTTCATTCACCAATTTCTTCGTCTCTCTTTTCAACTCTTAATGCTCAATCCCAACATGAATATGTCAAATTCAATCCCAACCAGTCTTCTTCTCATGACGAACCTTCTGTTCTTCACCAGCTCTCTGTTTTGTTACCAATCCCCCATCAAATTTTACCTCCAAAACAATTTGACCCCACTGATTCGAATAAGAAGGTAGAATCTGTTAGGGCTGTGGATGGGTTTTTAATGCCCGACGAGAAATTACGTGGGGTTTTTCTTCAGAAATTGAAGGGTATAGCTGTAATTGAGCATGCGCTCGACAATGTTGGTGTGGATTTGAGCGTTGATGTTGTTGCACAAGTAGTGAATAGAGGTTGTTTAGGCGGTGAAGCAATGCTTGTGTTTTTTAATTGGGCGATTAAGAAGCCAAATGTAGCTAAGCATGTTCATACATACCATATAATCCTCAAAGCATTGGGTAGAAGAAAGTTCTTTAATTATATGATGCAAGTTTTGAATGACATGAGGAGCCAAGACATACGTCTCGATTTGGAGACTGTGTCGATTGTGATGGATAGTTTTGTGAGGGTTGGACATGTCTCGAAAGCAATCCAAGTGTTCCGAAACTCGGCAGAGTTTGGGTTGGATTGCGATACTGAGTGTCTGAATGTGCTTCTGCAGTGTCTGTGTCAGCGGTCTCATGTAGTGGCTGCAAATTCGTTTCTTAATTCTGTGAAGGGGAAAGTGCGATTCAATGGCACTACGTATAACATTGTTATTGGTGGGTGGTCGAAATATGGTAGAGTTGGTGAGATGGAGAGGACTTTGGAAGCAATGGTAGCAGGTGGGTTTAGTCCTGATAGTGCAACTTTCAGTTACATTCTTGAGGGTCTAGGAAGAGCTGATCGGATTGACGATGCAGTTGAGATTTTTGAGAGCATGAAGGGGAAAGGTTGCGTGCCAGACACCGTTACATACAATGCAATGATCTCTAACTTCATCTCTGTTGCGAATATTGATGAATGTGTAAACTACTTCAAGAGTATGTCGAGTAATGCTTGCGATCCAAATGTTGATACTTATACCAAATTGATTGCTGGTTTCCTTAAAGCCCGGAAAGTGGCGGATGCACTGGAGATGTTTGATGAGATGTTAAGTCGAGGATTTGTTCCTACTACGGGGACTATAACCTCTTTTATGGAACCCCTATGTAGCTATGGTCCACCATATGCTGCTATGATGATTTACCAGAAAGCAAGAAAGGTCGGATGTAGAATATCATTGACTGCTTATAAGCTATTGCTTATGCGCCTTTCTAGATTTGGTAAATGTGGAATGTTGCTAAACATTTGGGAAGAGATGCAGGAATGTGGATATGCTTCTGATATCGAAGTTTATGAGTATGTAATCAGTGGACTTTGCAACATTGGGCAGCTTGAAAATGCTGTACTTGTCATGGAAGAGTCTCTACGAAAAGGACATTTCGTCAGAGATTGGTTTGATAATAGAGCTATCATCTTATTAGAAACACAGGTAAACTGCAGCATTCAGGATTGCATACCTGTACACCATCCAGAAGTTGCCCTTTCCATTGATGTTTACCATAATGTGCAAAACTGGATCAAGACCCAAGGATTCTTGGTCGTTGGACGAAAAACCTTGACTGAGTTGAGGGATAAGATATACTGTTTAACAGATAAGGTGATGGAAAAAGATGGCCAGCATAATCATTCAGGATGTTTCCTCATAGAACTACACGTACAGAAATATAAAGTGTGTCAGATGTATAGTGCAACAAAGTTGACTGTCAATGACAATTGGATTGCGGAGAATCCCTGCTACTTCTCCGATAATTGCTACTTATCAATTTTCATTAATGAGCAGCGTATGAAGAATCCGTACAAAATGGGAGTTTTCTATTCTAGTCAATGTAGAGCTCCATTGACTAGGCACCCACGCTTATGCAATCTAACAAACTTGAAGTCTTCTGCAGTCCTCCGTAAACCCGATTTAAGTGTAAAGATTGCATCCCCCCAAAGAACCAGAAGACGGGGAAGTCTGAAGATTTCATTAATACTAGACTTTCTTACAAAAAGCGCGTCGATACGAGTTCGTGGACATGCGAAATGTGGGAATCGGAGTTCGTATGAGGAAGTTATGGCTATCGGAAGAAGTTTCCGTTTTAGTATAAATATAGAAAATCTGAAATTTTATTTCATTTTTCCCTTTCCTTTTCCGGAAACCCTTCTCCTCTCTCTCTCTTCTCTCTCGGTCGACCCCTTCAGAAACGAAAATCTTCGACTGACCCGACCCGGACCCGGCCGACCCGACCCGACTTTTCCGGCGGACTGCGGCGGTCTCCGGCGACGAAACTTTCCAGACAGGTTCGCCTCCTTGCTCCGGTCGTCTCTGTGGTGGTCTCTATCGACGATTCTCCTCCACGGCGGCGCTGCAAGGCGGTGCAGTTCGTGGTTTTTCAACCCGACCGGAAAACGCAGCTCCGACGTCGGCGGCGCTTCAACCTTGGCCTGGGGAGTTCGCAGCAGCCTCCTTGTGCGAGCTGTGGTGGTTGTTTGGAAGGATACACGTGAAAACTCGATCAACTCAGTTGGGATTACTGTTCACGGCTTACGCAGCGGGAATTCAAGACGGGGTCTGAAATCATATGTCACAGATGGTGACAGGTCGCAGATGGTCAGGAAAATCGTGGCTGAAGCTGAAGGAGCTTGTTGGCAGCAGAACGGGGGCGTGATAGATTGGTATCAGAGCGTAAGGTACATATTTGGTGACAGTCAATACTCCTCGAGTGATGGCCCGTCTGCAGCGGATCCCCATCGGATGCTCTTCGGTATTGATATAGTCATTGGGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19 TPR_8

Protein Analysis

979

Amino Acids

110.05

Weight (kDa)

9.05

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 277 - 321 1.5e-07 PPR repeat family
PPR_3 PF13812 298 - 354 1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 305 - 337 1e-05 PPR repeat
PPR_2 PF13041 316 - 355 2.9e-09 PPR repeat family
PPR_long PF17177 324 - 422 1.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 343 - 392 4e-11 PPR repeat family
PPR_1 PF12854 376 - 406 2.3e-06 PPR repeat
PPR_2 PF13041 378 - 426 2.9e-10 PPR repeat family
SNAPC3 PF12251 610 - 654 6.7e-06 snRNA-activating protein complex (SNAPc), subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1359
AarI CACCTGC 1 cut(s) 899
AasI GACNNNNNNGTC 1 cut(s) 2121
AatII GACGTC 1 cut(s) 2574
Acc36I ACCTGC 1 cut(s) 899
AccB1I GGYRCC 1 cut(s) 2016
AccI GTMKAC 1 cut(s) 2340
AccII CGCG 1 cut(s) 2165
AccIII TCCGGA 1 cut(s) 2302
AclWI GGATC 4 cut(s) 1124, 1694, 2888, 2901
AcoI YGGCCR 2 cut(s) 1783, 2386
AcsI RAATTY 5 cut(s) 152, 234, 781, 2273, 2707
AcuI CTGAAG 5 cut(s) 329, 2147, 2332, 2799, 2805
AcvI CACGTG 1 cut(s) 2654
AcyI GRCGYC 1 cut(s) 2571
AdeI CACNNNGTG 1 cut(s) 26
AfaI GTAC 6 cut(s) 68, 1515, 1632, 1827, 1967, 2843
AfiI CCNNNNNNNGG 7 cut(s) 694, 1186, 1244, 2115, 2384, 2466, 2595
AflIII ACRYGT 3 cut(s) 661, 1822, 2651
AhdI GACNNNNNGTC 1 cut(s) 1550
AjnI CCWGG 2 cut(s) 62, 2594
AloI GAACNNNNNNTCC 2 cut(s) 2191, 2223
Alw21I GWGCWC 1 cut(s) 2005
Alw26I GTCTC 9 cut(s) 111, 614, 614, 670, 768, 1536, 2429, 2478, 2490
AlwI GGATC 4 cut(s) 1124, 1694, 2888, 2901
AlwNI CAGNNNCTG 1 cut(s) 751
Ama87I CYCGRG 1 cut(s) 2869
Aor13HI TCCGGA 1 cut(s) 2302
AoxI GGCC 4 cut(s) 1783, 2386, 2592, 2878
ApoI RAATTY 5 cut(s) 152, 234, 781, 2273, 2707
ArsI GACNNNNNNTTYG 4 cut(s) 2033, 2065, 2150, 2182
AseI ATTAAT 2 cut(s) 1941, 2138
Asp700I GAANNNNTTC 2 cut(s) 2310, 2361
AspLEI GCGC 6 cut(s) 17, 382, 1377, 2165, 2516, 2582
AspS9I GGNCC 3 cut(s) 1286, 2381, 2879
AsuC2I CCSGG 3 cut(s) 1180, 2379, 2385
AsuHPI GGTGA 8 cut(s) 74, 84, 191, 464, 887, 1780, 2756, 2864
AsuII TTCGAA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 2869
AvaII GGWCC 2 cut(s) 1286, 2381
BalI TGGCCA 1 cut(s) 1785
BamHI GGATCC 1 cut(s) 2893
BanI GGYRCC 1 cut(s) 2016
BanII GRGCYC 1 cut(s) 2005
BarI GAAGNNNNNNTAC 4 cut(s) 1518, 1550, 1949, 1981
BbrPI CACGTG 1 cut(s) 2654
BbsI GAAGAC 3 cut(s) 162, 2043, 2119
Bbv12I GWGCWC 1 cut(s) 2005
BceAI ACGGC 4 cut(s) 9, 28, 2524, 2707
BciT130I CCWGG 2 cut(s) 64, 2596
BciVI GTATCC 1 cut(s) 2641
BcnI CCSGG 3 cut(s) 1180, 2379, 2385
BcoDI GTCTC 9 cut(s) 111, 614, 614, 670, 768, 1536, 2429, 2478, 2490
BfaI CTAG 5 cut(s) 959, 1383, 1989, 2013, 2144
BfmI CTRYAG 4 cut(s) 743, 1606, 2055, 2886
BfoI RGCGCY 3 cut(s) 18, 2517, 2583
BfuAI ACCTGC 1 cut(s) 899
BfuI GTATCC 1 cut(s) 2641
BlpI GCTNAGC 1 cut(s) 504
Bme1390I CCNGG 5 cut(s) 64, 1180, 2379, 2385, 2596
Bme18I GGWCC 2 cut(s) 1286, 2381
BmeRI GACNNNNNGTC 1 cut(s) 1550
BmeT110I CYCGRG 1 cut(s) 2869
BmgT120I GGNCC 3 cut(s) 1286, 2381, 2879
BmiI GGNNCC 5 cut(s) 596, 1269, 2018, 2383, 2895
BmrFI CCNGG 5 cut(s) 64, 1180, 2379, 2385, 2596
BmsI GCATC 6 cut(s) 561, 973, 1183, 1416, 2102, 2895
BoxI GACNNNNGTC 1 cut(s) 606
BpiI GAAGAC 3 cut(s) 162, 2043, 2119
BpmI CTGGAG 1 cut(s) 1220
Bpu1102I GCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 971
BpuMI CCSGG 3 cut(s) 1180, 2379, 2385
BsaAI YACGTR 4 cut(s) 332, 831, 1825, 2654
BsaBI GATNNNNATC 2 cut(s) 2826, 2898
BsaHI GRCGYC 1 cut(s) 2571
BsaI GGTCTC 3 cut(s) 768, 2429, 2490
BsaJI CCNNGG 4 cut(s) 1696, 2506, 2589, 2595
BsaWI WCCGGW 3 cut(s) 2302, 2466, 2552
BsaXI ACNNNNNCTCC 2 cut(s) 611, 641
Bsc4I CCNNNNNNNGG 7 cut(s) 694, 1186, 1244, 2115, 2384, 2466, 2595
Bse1I ACTGG 3 cut(s) 166, 1203, 1688
Bse3DI GCAATG 3 cut(s) 465, 906, 1056
Bse8I GATNNNNATC 2 cut(s) 2826, 2898
BseAI TCCGGA 1 cut(s) 2302
BseBI CCWGG 2 cut(s) 64, 2596
BseDI CCNNGG 4 cut(s) 1696, 2506, 2589, 2595
BseGI GGATG 7 cut(s) 307, 1198, 1340, 1636, 1808, 2093, 2910
BseJI GATNNNNATC 2 cut(s) 2826, 2898
BseLI CCNNNNNNNGG 7 cut(s) 694, 1186, 1244, 2115, 2384, 2466, 2595
BseMI GCAATG 3 cut(s) 465, 906, 1056
BseMII CTCAG 4 cut(s) 64, 714, 1722, 2685
BseNI ACTGG 3 cut(s) 166, 1203, 1688
BseRI GAGGAG 4 cut(s) 607, 2306, 2492, 2857
BseX3I CGGCCG 1 cut(s) 2386
BsgI GTGCAG 1 cut(s) 2548
Bsh1236I CGCG 1 cut(s) 2165
Bsh1285I CGRYCG 4 cut(s) 2340, 2389, 2471, 2553
BshFI GGCC 4 cut(s) 1785, 2388, 2594, 2880
BshNI GGYRCC 1 cut(s) 2016
BsiEI CGRYCG 4 cut(s) 2340, 2389, 2471, 2553
BsiHKAI GWGCWC 1 cut(s) 2005
BsiHKCI CYCGRG 1 cut(s) 2869
BsiSI CCGG 8 cut(s) 1180, 2303, 2379, 2385, 2408, 2428, 2467, 2553
BslFI GGGAC 1 cut(s) 1261
BslI CCNNNNNNNGG 7 cut(s) 694, 1186, 1244, 2115, 2384, 2466, 2595
BsmAI GTCTC 9 cut(s) 111, 614, 614, 670, 768, 1536, 2429, 2478, 2490
BsmBI CGTCTC 3 cut(s) 111, 614, 2478
BsmFI GGGAC 1 cut(s) 1261
BsmI GAATGC 1 cut(s) 1611
BsnI GGCC 4 cut(s) 1785, 2388, 2594, 2880
Bso31I GGTCTC 3 cut(s) 768, 2429, 2490
BsoBI CYCGRG 1 cut(s) 2869
Bsp119I TTCGAA 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 2005
Bsp13I TCCGGA 1 cut(s) 2302
Bsp1407I TGTACA 1 cut(s) 1630
Bsp143I GATC 6 cut(s) 970, 1053, 1129, 1686, 2664, 2893
Bsp1720I GCTNAGC 1 cut(s) 504
BspANI GGCC 4 cut(s) 1785, 2388, 2594, 2880
BspCNI CTCAG 4 cut(s) 63, 715, 1723, 2684
BspEI TCCGGA 1 cut(s) 2302
BspFNI CGCG 1 cut(s) 2165
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 5 cut(s) 596, 1269, 2018, 2383, 2895
BspMAI CTGCAG 4 cut(s) 747, 1610, 2059, 2890
BspMI ACCTGC 1 cut(s) 899
BspPI GGATC 4 cut(s) 1124, 1694, 2888, 2901
BspQI GCTCTTC 2 cut(s) 958, 2915
BspT104I TTCGAA 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 2016
BspTNI GGTCTC 3 cut(s) 768, 2429, 2490
BsrDI GCAATG 3 cut(s) 465, 906, 1056
BsrGI TGTACA 1 cut(s) 1630
BsrI ACTGG 3 cut(s) 166, 1203, 1688
BssECI CCNNGG 4 cut(s) 1696, 2506, 2589, 2595
BssMI GATC 6 cut(s) 970, 1053, 1129, 1686, 2664, 2893
BssNI GRCGYC 1 cut(s) 2571
BssT1I CCWWGG 2 cut(s) 1696, 2589
Bst2UI CCWGG 2 cut(s) 64, 2596
Bst4CI ACNGT 6 cut(s) 625, 1036, 1754, 1873, 2686, 2858
Bst6I CTCTTC 5 cut(s) 958, 1416, 1521, 2332, 2915
BstACI GRCGYC 1 cut(s) 2571
BstAUI TGTACA 1 cut(s) 1630
BstBAI YACGTR 4 cut(s) 332, 831, 1825, 2654
BstBI TTCGAA 1 cut(s) 269
BstC8I GCNNGC 5 cut(s) 378, 1025, 1126, 1787, 2625
BstDEI CTNAG 5 cut(s) 50, 504, 723, 1731, 2671
BstDSI CCRYGG 1 cut(s) 2506
BstF5I GGATG 7 cut(s) 307, 1198, 1340, 1636, 1808, 2093, 2910
BstFNI CGCG 1 cut(s) 2165
BstH2I RGCGCY 3 cut(s) 18, 2517, 2583
BstHHI GCGC 6 cut(s) 17, 382, 1377, 2165, 2516, 2582
BstKTI GATC 6 cut(s) 973, 1056, 1132, 1689, 2667, 2896
BstMAI GTCTC 9 cut(s) 111, 614, 614, 670, 768, 1536, 2429, 2478, 2490
BstMBI GATC 6 cut(s) 970, 1053, 1129, 1686, 2664, 2893
BstMCI CGRYCG 4 cut(s) 2340, 2389, 2471, 2553
BstMWI GCNNNNNNNGC 4 cut(s) 21, 905, 2700, 2789
BstNI CCWGG 2 cut(s) 64, 2596
BstNSI RCATGY 4 cut(s) 380, 512, 665, 2189
BstPAI GACNNNNGTC 1 cut(s) 606
BstSCI CCNGG 5 cut(s) 62, 1178, 2377, 2383, 2594
BstSFI CTRYAG 4 cut(s) 743, 1606, 2055, 2886
BstSNI TACGTA 1 cut(s) 831
BstUI CGCG 1 cut(s) 2165
BstV2I GAAGAC 3 cut(s) 162, 2043, 2119
BstX2I RGATCY 1 cut(s) 2893
BstYI RGATCY 1 cut(s) 2893
BstZI CGGCCG 1 cut(s) 2386
BsuI GTATCC 1 cut(s) 2641
BsuRI GGCC 4 cut(s) 1785, 2388, 2594, 2880
BtgI CCRYGG 1 cut(s) 2506
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 7 cut(s) 307, 1198, 1340, 1636, 1808, 2093, 2910
BtsI GCAGTG 1 cut(s) 752
BtsIMutI CAGTG 4 cut(s) 261, 752, 1196, 1483
BveI ACCTGC 1 cut(s) 899
Cac8I GCNNGC 5 cut(s) 378, 1025, 1126, 1787, 2625
CaiI CAGNNNCTG 1 cut(s) 751
CciI TCATGA 1 cut(s) 178
CfoI GCGC 6 cut(s) 17, 382, 1377, 2165, 2516, 2582
Cfr13I GGNCC 3 cut(s) 1286, 2381, 2879
CseI GACGC 1 cut(s) 2154
Csp6I GTAC 6 cut(s) 67, 1514, 1631, 1826, 1966, 2842
CviQI GTAC 6 cut(s) 67, 1514, 1631, 1826, 1966, 2842
DdeI CTNAG 5 cut(s) 50, 504, 723, 1731, 2671
DpnI GATC 6 cut(s) 972, 1055, 1131, 1688, 2666, 2895
DpnII GATC 6 cut(s) 970, 1053, 1129, 1686, 2664, 2893
DraIII CACNNNGTG 1 cut(s) 26
DrdI GACNNNNNNGTC 1 cut(s) 2121
DriI GACNNNNNGTC 1 cut(s) 1550
DseDI GACNNNNNNGTC 1 cut(s) 2121
EaeI YGGCCR 2 cut(s) 1783, 2386
EagI CGGCCG 1 cut(s) 2386
Eam1104I CTCTTC 5 cut(s) 958, 1416, 1521, 2332, 2915
Eam1105I GACNNNNNGTC 1 cut(s) 1550
EarI CTCTTC 5 cut(s) 958, 1416, 1521, 2332, 2915
EciI GGCGGA 2 cut(s) 1205, 2426
Ecl136II GAGCTC 1 cut(s) 2003
EclXI CGGCCG 1 cut(s) 2386
Eco105I TACGTA 1 cut(s) 831
Eco130I CCWWGG 2 cut(s) 1696, 2589
Eco24I GRGCYC 1 cut(s) 2005
Eco31I GGTCTC 3 cut(s) 768, 2429, 2490
Eco32I GATATC 1 cut(s) 1453
Eco47I GGWCC 2 cut(s) 1286, 2381
Eco52I CGGCCG 1 cut(s) 2386
Eco53kI GAGCTC 1 cut(s) 2003
Eco57I CTGAAG 5 cut(s) 329, 2147, 2332, 2799, 2805
Eco72I CACGTG 1 cut(s) 2654
Eco88I CYCGRG 1 cut(s) 2869
EcoICRI GAGCTC 1 cut(s) 2003
EcoRI GAATTC 1 cut(s) 2707
EcoRII CCWGG 2 cut(s) 62, 2594
EcoRV GATATC 1 cut(s) 1453
EcoT14I CCWWGG 2 cut(s) 1696, 2589
EcoT38I GRGCYC 1 cut(s) 2005
ErhI CCWWGG 2 cut(s) 1696, 2589
Esp3I CGTCTC 3 cut(s) 111, 614, 2478
FalI AAGNNNNNCTT 4 cut(s) 447, 479, 1635, 1667
FaqI GGGAC 1 cut(s) 1261
FauI CCCGC 1 cut(s) 2696
FauNDI CATATG 2 cut(s) 1294, 2731
FblI GTMKAC 1 cut(s) 2340
FokI GGATG 7 cut(s) 314, 1205, 1347, 1623, 1815, 2080, 2917
FriOI GRGCYC 1 cut(s) 2005
FspBI CTAG 5 cut(s) 959, 1383, 1989, 2013, 2144
GlaI GCGC 6 cut(s) 16, 381, 1376, 2164, 2515, 2581
GsuI CTGGAG 1 cut(s) 1220
HaeII RGCGCY 3 cut(s) 18, 2517, 2583
HaeIII GGCC 4 cut(s) 1785, 2388, 2594, 2880
HapII CCGG 8 cut(s) 1180, 2303, 2379, 2385, 2408, 2428, 2467, 2553
HgaI GACGC 1 cut(s) 2154
HhaI GCGC 6 cut(s) 17, 382, 1377, 2165, 2516, 2582
Hin1I GRCGYC 1 cut(s) 2571
Hin6I GCGC 6 cut(s) 15, 380, 1375, 2163, 2514, 2580
HinP1I GCGC 6 cut(s) 15, 380, 1375, 2163, 2514, 2580
HincII GTYRAC 2 cut(s) 1869, 2341
HindII GTYRAC 2 cut(s) 1869, 2341
HinfI GANTC 9 cut(s) 266, 284, 816, 1529, 1701, 1897, 1960, 2200, 2497
HpaII CCGG 8 cut(s) 1180, 2303, 2379, 2385, 2408, 2428, 2467, 2553
HphI GGTGA 8 cut(s) 74, 84, 191, 464, 887, 1780, 2756, 2864
Hpy99I CGWCG 6 cut(s) 323, 2170, 2436, 2497, 2573, 2576
HpyCH4III ACNGT 6 cut(s) 625, 1036, 1754, 1873, 2686, 2858
HpyCH4IV ACGT 6 cut(s) 331, 607, 830, 1824, 2571, 2653
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 905, 2700, 2789
HpyF3I CTNAG 5 cut(s) 50, 504, 723, 1731, 2671
HpySE526I ACGT 6 cut(s) 331, 607, 830, 1824, 2571, 2653
Hsp92I GRCGYC 1 cut(s) 2571
HspAI GCGC 6 cut(s) 15, 380, 1375, 2163, 2514, 2580
Kpn2I TCCGGA 1 cut(s) 2302
Kzo9I GATC 6 cut(s) 970, 1053, 1129, 1686, 2664, 2893
LguI GCTCTTC 2 cut(s) 958, 2915
LmnI GCTCC 5 cut(s) 594, 2008, 2469, 2570, 2789
LweI GCATC 6 cut(s) 561, 973, 1183, 1416, 2102, 2895
MaeI CTAG 5 cut(s) 959, 1383, 1989, 2013, 2144
MaeII ACGT 6 cut(s) 331, 607, 830, 1824, 2571, 2653
MaeIII GTNAC 6 cut(s) 216, 941, 1036, 2734, 2744, 2852
MalI GATC 6 cut(s) 972, 1055, 1131, 1688, 2666, 2895
MboI GATC 6 cut(s) 970, 1053, 1129, 1686, 2664, 2893
MfeI CAATTG 1 cut(s) 1882
MflI RGATCY 1 cut(s) 2893
MhlI GDGCHC 1 cut(s) 2005
MlsI TGGCCA 1 cut(s) 1785
MluNI TGGCCA 1 cut(s) 1785
MlyI GAGTC 1 cut(s) 1538
MmeI TCCRAC 5 cut(s) 637, 690, 1312, 1693, 2592
Mox20I TGGCCA 1 cut(s) 1785
MroI TCCGGA 1 cut(s) 2302
MroXI GAANNNNTTC 2 cut(s) 2310, 2361
MscI TGGCCA 1 cut(s) 1785
MslI CAYNNNNRTG 2 cut(s) 144, 2026
Msp20I TGGCCA 1 cut(s) 1785
MspA1I CMGCKG 3 cut(s) 760, 2703, 2891
MspI CCGG 8 cut(s) 1180, 2303, 2379, 2385, 2408, 2428, 2467, 2553
MspR9I CCNGG 5 cut(s) 64, 1180, 2379, 2385, 2596
MunI CAATTG 1 cut(s) 1882
Mva1269I GAATGC 1 cut(s) 1611
MvaI CCWGG 2 cut(s) 64, 2596
MvnI CGCG 1 cut(s) 2165
MwoI GCNNNNNNNGC 4 cut(s) 21, 905, 2700, 2789
NciI CCSGG 3 cut(s) 1180, 2379, 2385
NdeI CATATG 2 cut(s) 1294, 2731
NdeII GATC 6 cut(s) 970, 1053, 1129, 1686, 2664, 2893
NlaIV GGNNCC 5 cut(s) 596, 1269, 2018, 2383, 2895
NmeAIII GCCGAG 1 cut(s) 674
NmuCI GTSAC 3 cut(s) 2734, 2744, 2852
NspI RCATGY 4 cut(s) 380, 512, 665, 2189
NspV TTCGAA 1 cut(s) 269
PaeI GCATGC 1 cut(s) 380
PaeR7I CTCGAG 1 cut(s) 2869
PagI TCATGA 1 cut(s) 178
PaqCI CACCTGC 1 cut(s) 899
PciI ACATGT 1 cut(s) 661
PciSI GCTCTTC 2 cut(s) 958, 2915
PcsI WCGNNNNNNNCGW 1 cut(s) 2371
PctI GAATGC 1 cut(s) 1611
PdmI GAANNNNTTC 2 cut(s) 2310, 2361
PfeI GAWTC 8 cut(s) 266, 284, 816, 1701, 1897, 1960, 2200, 2497
PflFI GACNNNGTC 2 cut(s) 625, 2718
PleI GAGTC 1 cut(s) 1537
PmaCI CACGTG 1 cut(s) 2654
PmlI CACGTG 1 cut(s) 2654
PpsI GAGTC 1 cut(s) 1537
Ppu21I YACGTR 4 cut(s) 332, 831, 1825, 2654
PscI ACATGT 1 cut(s) 661
PshAI GACNNNNGTC 1 cut(s) 606
PshBI ATTAAT 2 cut(s) 1941, 2138
PsiI TTATAA 1 cut(s) 1359
Psp124BI GAGCTC 1 cut(s) 2005
Psp6I CCWGG 2 cut(s) 62, 2594
PspCI CACGTG 1 cut(s) 2654
PspGI CCWGG 2 cut(s) 62, 2594
PspN4I GGNNCC 5 cut(s) 596, 1269, 2018, 2383, 2895
PspPI GGNCC 3 cut(s) 1286, 2381, 2879
PspXI VCTCGAGB 1 cut(s) 2869
PsrI GAACNNNNNNTAC 2 cut(s) 1809, 1841
PstI CTGCAG 4 cut(s) 747, 1610, 2059, 2890
PstNI CAGNNNCTG 1 cut(s) 751
PsuI RGATCY 1 cut(s) 2893
PsyI GACNNNGTC 2 cut(s) 625, 2718
RsaI GTAC 6 cut(s) 68, 1515, 1632, 1827, 1967, 2843
RsaNI GTAC 6 cut(s) 67, 1514, 1631, 1826, 1966, 2842
RseI CAYNNNNRTG 2 cut(s) 144, 2026
SacI GAGCTC 1 cut(s) 2005
SalI GTCGAC 1 cut(s) 2339
SapI GCTCTTC 2 cut(s) 958, 2915
Sau3AI GATC 6 cut(s) 970, 1053, 1129, 1686, 2664, 2893
Sau96I GGNCC 3 cut(s) 1286, 2381, 2879
SchI GAGTC 1 cut(s) 1538
ScrFI CCNGG 5 cut(s) 64, 1180, 2379, 2385, 2596
SduI GDGCHC 1 cut(s) 2005
SfaNI GCATC 6 cut(s) 561, 973, 1183, 1416, 2102, 2895
SfcI CTRYAG 4 cut(s) 743, 1606, 2055, 2886
Sfr274I CTCGAG 1 cut(s) 2869
SfuI TTCGAA 1 cut(s) 269
SinI GGWCC 2 cut(s) 1286, 2381
SlaI CTCGAG 1 cut(s) 2869
SmiMI CAYNNNNRTG 2 cut(s) 144, 2026
SmlI CTYRAG 2 cut(s) 950, 2869
SmoI CTYRAG 2 cut(s) 950, 2869
SnaBI TACGTA 1 cut(s) 831
SphI GCATGC 1 cut(s) 380
SspI AATATT 1 cut(s) 1081
SspMI CTAG 5 cut(s) 959, 1383, 1989, 2013, 2144
SstI GAGCTC 1 cut(s) 2005
StyD4I CCNGG 5 cut(s) 62, 1178, 2377, 2383, 2594
StyI CCWWGG 2 cut(s) 1696, 2589
TaaI ACNGT 6 cut(s) 625, 1036, 1754, 1873, 2686, 2858
TaiI ACGT 6 cut(s) 334, 610, 833, 1827, 2574, 2656
TaqII GACCGA 1 cut(s) 2326
TatI WGTACW 2 cut(s) 1513, 1630
TauI GCSGC 3 cut(s) 2421, 2514, 2580
TfiI GAWTC 8 cut(s) 266, 284, 816, 1701, 1897, 1960, 2200, 2497
TscAI CASTG 4 cut(s) 268, 752, 1203, 1483
TseFI GTSAC 3 cut(s) 2734, 2744, 2852
Tsp45I GTSAC 3 cut(s) 2734, 2744, 2852
TspGWI ACGGA 3 cut(s) 1953, 2054, 2234
TspRI CASTG 4 cut(s) 268, 752, 1203, 1483
Tth111I GACNNNGTC 2 cut(s) 625, 2718
VpaK11BI GGWCC 2 cut(s) 1286, 2381
VspI ATTAAT 2 cut(s) 1941, 2138
XapI RAATTY 5 cut(s) 152, 234, 781, 2273, 2707
XbaI TCTAGA 1 cut(s) 1382
XceI RCATGY 4 cut(s) 380, 512, 665, 2189
XhoI CTCGAG 1 cut(s) 2869
XmiI GTMKAC 1 cut(s) 2340
XmnI GAANNNNTTC 2 cut(s) 2310, 2361
XspI CTAG 5 cut(s) 959, 1383, 1989, 2013, 2144
ZraI GACGTC 1 cut(s) 2572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.