Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003427

Physical Location & Seq

Genomic Coordinates Reverse (-)

31466698 .. 31468826

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1186300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTGCATTTTGTGGTTTCCTGAACTTTCAAACATGTTTTCAGATAGCTGCCCGCCTTTGTCATGGGATCAGGAACACAATTACACTCGTGATGCTATTGAGTTATACTACGAAGCTGGTTCAGGAGTTTCTGTGTCAAAGACAGAGATCCTTCGTTGTCTCCTAGAGGGCACACCAGCTTCTAATGTGGAAAGCATCAATGATGAGCAAAAGGATGCCAATGAGAATTCTATTGGTAGCAGCTCAGCAGGCAAAGGTTTCTCTAAATGGATCAAAGTAAACGAAAGTAGGAACACTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19 TPR_8

Protein Analysis

101

Amino Acids

11.14

Weight (kDa)

4.51

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04130 AT1G04130
fragaria_vesca	FvH4_2g20260 FvH4_2g20260 FvH4_2g20260
malus_domestica	MD05G1186300.v1.1 MD05G1186500.v1.1 MD10G1174200.v1.1 MD10G1174300.v1.1
prunus_persica	Prupe.1G573100_v2.0.a1 Prupe.8G213100_v2.0.a1
pyrus_communis	pycom10g15020 pycom10g15030
rosa_chinensis	RchiOBHm_Chr6g0286031 RchiOBHm_Chr6g0286041
rosa_laevigata	RLG00000012587 RLG00000012588
rosa_multiflora	Rmu_co8274415.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230420 Rroxscaffold_3G00250000 Rroxscaffold_7G00182510
rosa_rugosa	Rorug06G0178400 Rorug06G0178500
rosa_samantha	Rh5CG093800 Rh6AG290400 Rh6AG290500 Rh6BG107700 Rh6BG293900 Rh6BG294000 Rh6CG293400 Rh6CG293500 Rh6DG285500 Rh6DG285600 Rh7CG476900 Rh7DG446100
rosa_wichuraiana	Rw6G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	3 cut(s)	75, 142, 278
AcsI	RAATTY	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	30
AluBI	AGCT	4 cut(s)	48, 116, 179, 243
AluI	AGCT	4 cut(s)	48, 116, 179, 243
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	3 cut(s)	75, 142, 278
ApeKI	GCWGC	2 cut(s)	48, 240
ApoI	RAATTY	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	35, 252
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	2 cut(s)	49, 241
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	2 cut(s)	50, 242
BmsI	GCATC	3 cut(s)	82, 204, 205
Bpu1102I	GCTNAGC	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
BseGI	GGATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	35, 252
BsmAI	GTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	67, 147, 270
Bsp1720I	GCTNAGC	1 cut(s)	244
BspACI	CCGC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	257
BspPI	GGATC	3 cut(s)	75, 142, 278
BssMI	GATC	3 cut(s)	67, 147, 270
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	53, 250
BstDEI	CTNAG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	3 cut(s)	70, 150, 273
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	67, 147, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	35, 252
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	53, 250
CviAII	CATG	2 cut(s)	34, 63
CviJI	RGCY	4 cut(s)	48, 116, 179, 243
CviKI_1	RGCY	4 cut(s)	48, 116, 179, 243
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	3 cut(s)	69, 149, 272
DpnII	GATC	3 cut(s)	67, 147, 270
EcoRI	GAATTC	1 cut(s)	226
FaeI	CATG	2 cut(s)	37, 66
FaiI	YATR	4 cut(s)	35, 64, 106, 301
FatI	CATG	2 cut(s)	33, 62
FauI	CCCGC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	49, 241
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	49, 241
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	2 cut(s)	49, 241
Hin1II	CATG	2 cut(s)	37, 66
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	4 cut(s)	20, 71, 89, 123
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpyF3I	CTNAG	1 cut(s)	244
Hsp92II	CATG	2 cut(s)	37, 66
Kzo9I	GATC	3 cut(s)	67, 147, 270
LpnPI	CCDG	6 cut(s)	33, 56, 102, 108, 189, 234
Lsp1109I	GCAGC	2 cut(s)	35, 252
LweI	GCATC	3 cut(s)	82, 204, 205
MaeI	CTAG	1 cut(s)	164
MalI	GATC	3 cut(s)	69, 149, 272
MboI	GATC	3 cut(s)	67, 147, 270
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	2 cut(s)	79, 226
MnlI	CCTC	1 cut(s)	160
MwoI	GCNNNNNNNGC	1 cut(s)	249
NdeII	GATC	3 cut(s)	67, 147, 270
NlaIII	CATG	2 cut(s)	37, 66
NspI	RCATGY	1 cut(s)	37
PciI	ACATGT	1 cut(s)	33
PkrI	GCNGC	2 cut(s)	50, 242
PscI	ACATGT	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	147
SatI	GCNGC	2 cut(s)	49, 241
Sau3AI	GATC	3 cut(s)	67, 147, 270
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	5 cut(s)	50, 118, 181, 245, 259
SfaNI	GCATC	3 cut(s)	82, 204, 205
Sse9I	AATT	2 cut(s)	79, 226
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	1 cut(s)	164
TasI	AATT	2 cut(s)	79, 226
TseI	GCWGC	2 cut(s)	48, 240
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	37
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.