Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003427

Physical Location & Seq

Genomic Coordinates Reverse (-)

52156957 .. 52158895

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG293900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTGGTATGCAATACTTTTCGACATGTGGATTTTGTTATGTCCTGAACTCCCAAACATGTTTTCAGAAAGCGCCCCGCCTTTGCCGTGGGACGAGAAACACAATTATACTCGTGATGCTGTTGAACTATTCTATGAAGCTAAATCAGGAGTTCCACTGTCAAAGACGAAGATTCTTCGTTGTCTCCTAGAGGGAACTCCAGCATCCAATCTGGAAAGCATGGTTGAGGAAAAAGATGCAACTGAAAATTCTAATTTTGGCAGCTCAGCTGGCAAAGGTTCCTCTAGATGGGTCAAAGTAAATGAGAAAAGAACCCTTTATGATATTCTGAAAGAAGCTAATTTCATTATTCAAGGGATCCCAGTGTTCGCTGTTGTTTCTAAAAAATCCAGCTTCTACAAAGAGTTCAAAGCCGGGGGCTGGGCTCTTCCAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19 TPR_8

Protein Analysis

145

Amino Acids

16.35

Weight (kDa)

5.89

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04130 AT1G04130
fragaria_vesca	FvH4_2g20260 FvH4_2g20260 FvH4_2g20260
malus_domestica	MD05G1186300.v1.1 MD05G1186500.v1.1 MD10G1174200.v1.1 MD10G1174300.v1.1
prunus_persica	Prupe.1G573100_v2.0.a1 Prupe.8G213100_v2.0.a1
pyrus_communis	pycom10g15020 pycom10g15030
rosa_chinensis	RchiOBHm_Chr6g0286031 RchiOBHm_Chr6g0286041
rosa_laevigata	RLG00000012587 RLG00000012588
rosa_multiflora	Rmu_co8274415.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230420 Rroxscaffold_3G00250000 Rroxscaffold_7G00182510
rosa_rugosa	Rorug06G0178400 Rorug06G0178500
rosa_samantha	Rh5CG093800 Rh6AG290400 Rh6AG290500 Rh6BG107700 Rh6BG293900 Rh6BG294000 Rh6CG293400 Rh6CG293500 Rh6DG285500 Rh6DG285600 Rh7CG476900 Rh7DG446100
rosa_wichuraiana	Rw6G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	2 cut(s)	352, 365
AcsI	RAATTY	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	288, 420
AflIII	ACRYGT	2 cut(s)	24, 57
AgsI	TTSAA	3 cut(s)	125, 353, 409
AjnI	CCWGG	1 cut(s)	430
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	5 cut(s)	140, 264, 269, 338, 393
AluI	AGCT	5 cut(s)	140, 264, 269, 338, 393
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	352, 365
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	415
BamHI	GGATCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	427
BauI	CACGAG	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	1 cut(s)	282
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	2 cut(s)	188, 285
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	1 cut(s)	262
BlpI	GCTNAGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	263
Bme1390I	CCNGG	2 cut(s)	415, 432
BmiI	GGNNCC	2 cut(s)	280, 359
BmrFI	CCNGG	2 cut(s)	415, 432
BmrI	ACTGGG	1 cut(s)	356
BmsI	GCATC	3 cut(s)	106, 212, 226
BmuI	ACTGGG	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	415
BsaJI	CCNNGG	3 cut(s)	86, 414, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 420
Bse1I	ACTGG	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	3 cut(s)	86, 414, 431
BseGI	GGATG	1 cut(s)	203
BseLI	CCNNNNNNNGG	2 cut(s)	288, 420
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	273
BseYI	CCCAGC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	288, 420
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	1 cut(s)	357
Bsp1720I	GCTNAGC	1 cut(s)	265
BspACI	CCGC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	280, 359
BspPI	GGATC	2 cut(s)	352, 365
BspQI	GCTCTTC	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	3 cut(s)	86, 414, 431
BssMI	GATC	1 cut(s)	357
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	432
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	265
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	2 cut(s)	28, 61
BstSCI	CCNGG	2 cut(s)	413, 430
BstV1I	GCAGC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	203
BtsIMutI	CAGTG	2 cut(s)	155, 369
Cac8I	GCNNGC	1 cut(s)	271
CfoI	GCGC	1 cut(s)	74
CviAII	CATG	3 cut(s)	25, 58, 220
CviJI	RGCY	8 cut(s)	140, 264, 269, 338, 393, 413, 420, 425
CviKI_1	RGCY	8 cut(s)	140, 264, 269, 338, 393, 413, 420, 425
DdeI	CTNAG	1 cut(s)	265
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	427
FaeI	CATG	3 cut(s)	28, 61, 223
FaiI	YATR	8 cut(s)	9, 26, 40, 59, 108, 135, 221, 321
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	3 cut(s)	24, 57, 219
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	1 cut(s)	190
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	2 cut(s)	188, 285
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	262
GsaI	CCCAGC	1 cut(s)	424
GsuI	CTGGAG	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	75
HapII	CCGG	1 cut(s)	414
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	28, 61, 223
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	414
Hpy188I	TCNGA	2 cut(s)	67, 330
Hpy188III	TCNNGA	5 cut(s)	44, 113, 147, 212, 285
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	11, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	1 cut(s)	265
Hsp92II	CATG	3 cut(s)	28, 61, 223
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	357
LguI	GCTCTTC	1 cut(s)	432
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	3 cut(s)	106, 212, 226
MaeI	CTAG	2 cut(s)	188, 285
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	3 cut(s)	167, 181, 419
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	4 cut(s)	103, 247, 253, 340
MnlI	CCTC	3 cut(s)	184, 220, 292
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	2 cut(s)	415, 432
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	1 cut(s)	270
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	3 cut(s)	28, 61, 223
NlaIV	GGNNCC	2 cut(s)	280, 359
NspI	RCATGY	2 cut(s)	28, 61
PciI	ACATGT	2 cut(s)	24, 57
PciSI	GCTCTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	263
PscI	ACATGT	2 cut(s)	24, 57
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	280, 359
PsuI	RGATCY	1 cut(s)	357
PvuII	CAGCTG	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	432
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	415, 432
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	6 cut(s)	142, 266, 271, 280, 340, 395
SfaNI	GCATC	3 cut(s)	106, 212, 226
Sse9I	AATT	4 cut(s)	103, 247, 253, 340
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	188, 285
StyD4I	CCNGG	2 cut(s)	413, 430
TaaI	ACNGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	21
TasI	AATT	4 cut(s)	103, 247, 253, 340
TfiI	GAWTC	1 cut(s)	172
TscAI	CASTG	2 cut(s)	162, 369
TseI	GCWGC	1 cut(s)	261
TspDTI	ATGAA	2 cut(s)	150, 334
TspRI	CASTG	2 cut(s)	162, 369
XapI	RAATTY	1 cut(s)	247
XbaI	TCTAGA	1 cut(s)	284
XceI	RCATGY	2 cut(s)	28, 61
XspI	CTAG	2 cut(s)	188, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.