Rw6G025030

Tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003427
Physical Location & Seq
Reverse (-)
48245939 .. 48248927
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025030.1

Sequence Viewer

Length: 1056 bp
ATGGCACTATGGATGGAGAAAGGCGCCGAACCCCAAACCGAAAGCGAAAAAGCTGACCTTGATGCCATCGCCGCCCTCAAAGAATCTGCTGCTATTGAACTCAAGGAGAAGGGGAACGAGTTTGTGAAAAAGGGTAAGAAGCATTACTCGGATGCCATAGACTGTTACACCAGGGCAATCAATAACCAAGCTTTGAGCGACCCAGAGACGTCTATTCTGTATTCGAATAGAGCCCATGTCAATCTTTTGCTTGGTAATTACAGACGTGCTCTTACGGATGCTGAGGAAGCAATTAGGCTCAGTAACACTAATGTCAAGGCATTTTACCGAGCTGCGAAAGCGTGTTTGTCATTGAACTTGTTGGCTGAATCGATTTCACATTGCAAAAATGGGCTTCAAATTGACCCCAGTAATGAAGGGCTAGAGAAGCTATTAGGGCAGGTTGAGTCAAAGAAGATGGAACTTGAACAGCGCGAGGCTCAAGTCTCCAAAGCTCTTACTGAGGCTAAGGACATTGTTTCTGCGATTGAAAAAAGAGGCTTGAAGGTTGGGAAGCCAATGTATCAAGAACTTACTGGATCAAGAAAGCCTGTATTGGACAAGAATAGTATTCTTCATTGGCCTGTTCTTCTTTTGTATCCAGAGGTTATGTCGAGTGACTTTATCGAGGATTTCTGTGAGACGGAAATCGCCCCGCCTTTGCCGTGGGACGAGAAACACAATTATACTCGTGATGCTGTTGAACTATTCTATGAAGCTAAATCAGGAGTTCCACTGTCAAAGACGAAGATTCTTCGTTGTCTCCTAGAGGGAACTCCAGCATCCAATCTGGAAAGCATGGTTGAGGAAAAAGATGCAACTGAAAATTCTAATTTTGGCAGCGCAGCTGGCAAAGGTTCCTCTAGATGGGTCAAAGTAAATGAGAAAAGAACCCTTTATGATATTCTGAAAGAAGCTAATTTCATTATTCAAGGGATCCCAGTGTTCGCTGTTGTTTCTAAAAAATCCAGCTTCTACAAAGAGTTCAAGGCCGGTGGCTGGGCTCTTCCAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19 TPR_8

Protein Analysis

351

Amino Acids

39.07

Weight (kDa)

6.09

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Wheel PF18972 200 - 256 9.2e-08 Cns1/TTC4 Wheel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 430
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 1 cut(s) 474
AciI CCGC 2 cut(s) 72, 695
AclWI GGATC 3 cut(s) 586, 970, 983
AcsI RAATTY 1 cut(s) 865
AcyI GRCGYC 2 cut(s) 24, 209
AfiI CCNNNNNNNGG 2 cut(s) 906, 1038
AgsI TTSAA 9 cut(s) 98, 355, 398, 467, 530, 544, 743, 971, 1027
AjiI CACGTC 1 cut(s) 266
AjnI CCWGG 2 cut(s) 170, 1048
AluBI AGCT 9 cut(s) 53, 191, 332, 430, 494, 758, 887, 956, 1011
AluI AGCT 9 cut(s) 53, 191, 332, 430, 494, 758, 887, 956, 1011
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 4 cut(s) 200, 490, 674, 806
AlwI GGATC 3 cut(s) 586, 970, 983
AoxI GGCC 2 cut(s) 620, 1029
ApeKI GCWGC 4 cut(s) 89, 332, 879, 884
ApoI RAATTY 1 cut(s) 865
AspLEI GCGC 3 cut(s) 26, 474, 884
AsuII TTCGAA 1 cut(s) 224
BamHI GGATCC 1 cut(s) 975
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 2 cut(s) 235, 1045
BauI CACGAG 1 cut(s) 729
Bbv12I GWGCWC 1 cut(s) 271
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 4 cut(s) 76, 319, 891, 896
BccI CCATC 4 cut(s) 7, 74, 451, 900
BceAI ACGGC 1 cut(s) 688
BciT130I CCWGG 2 cut(s) 172, 1050
BciVI GTATCC 1 cut(s) 648
BcoDI GTCTC 4 cut(s) 200, 490, 674, 806
BfaI CTAG 3 cut(s) 422, 806, 903
BfoI RGCGCY 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 430
BfuI GTATCC 1 cut(s) 648
BisI GCNGC 5 cut(s) 72, 90, 333, 880, 885
BlsI GCNGC 5 cut(s) 73, 91, 334, 881, 886
Bme1390I CCNGG 2 cut(s) 172, 1050
BmgBI CACGTC 1 cut(s) 266
BmiI GGNNCC 3 cut(s) 25, 898, 977
BmrFI CCNGG 2 cut(s) 172, 1050
BmrI ACTGGG 2 cut(s) 402, 974
BmsI GCATC 6 cut(s) 52, 142, 268, 724, 830, 844
BmuI ACTGGG 2 cut(s) 402, 974
BpmI CTGGAG 1 cut(s) 801
Bpu10I CCTNAGC 2 cut(s) 282, 507
Bpu14I TTCGAA 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 86, 465
Bsa29I ATCGAT 1 cut(s) 371
BsaHI GRCGYC 2 cut(s) 24, 209
BsaJI CCNNGG 3 cut(s) 171, 704, 1049
Bsc4I CCNNNNNNNGG 2 cut(s) 906, 1038
Bse118I RCCGGY 1 cut(s) 1031
Bse1I ACTGG 3 cut(s) 408, 580, 980
Bse3DI GCAATG 1 cut(s) 379
BseBI CCWGG 2 cut(s) 172, 1050
BseCI ATCGAT 1 cut(s) 371
BseDI CCNNGG 3 cut(s) 171, 704, 1049
BseGI GGATG 4 cut(s) 18, 157, 283, 821
BseLI CCNNNNNNNGG 2 cut(s) 906, 1038
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 3 cut(s) 273, 313, 492
BseNI ACTGG 3 cut(s) 408, 580, 980
BseXI GCAGC 4 cut(s) 76, 319, 891, 896
BseYI CCCAGC 1 cut(s) 1038
Bsh1236I CGCG 1 cut(s) 474
BshFI GGCC 2 cut(s) 622, 1031
BshNI GGYRCC 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 1 cut(s) 1032
BslFI GGGAC 1 cut(s) 722
BslI CCNNNNNNNGG 2 cut(s) 906, 1038
BsmAI GTCTC 4 cut(s) 200, 490, 674, 806
BsmBI CGTCTC 2 cut(s) 200, 674
BsmFI GGGAC 1 cut(s) 722
BsnI GGCC 2 cut(s) 622, 1031
Bsp119I TTCGAA 1 cut(s) 224
Bsp1286I GDGCHC 3 cut(s) 235, 271, 1045
Bsp143I GATC 2 cut(s) 578, 975
BspACI CCGC 2 cut(s) 72, 695
BspANI GGCC 2 cut(s) 622, 1031
BspCNI CTCAG 3 cut(s) 274, 312, 493
BspDI ATCGAT 1 cut(s) 371
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 3 cut(s) 25, 898, 977
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 3 cut(s) 586, 970, 983
BspQI GCTCTTC 1 cut(s) 1050
BspT104I TTCGAA 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 1031
BsrI ACTGG 3 cut(s) 408, 580, 980
BssAI RCCGGY 1 cut(s) 1031
BssECI CCNNGG 3 cut(s) 171, 704, 1049
BssMI GATC 2 cut(s) 578, 975
BssNI GRCGYC 2 cut(s) 24, 209
BssSI CACGAG 1 cut(s) 729
Bst2BI CACGAG 1 cut(s) 729
Bst2UI CCWGG 2 cut(s) 172, 1050
Bst4CI ACNGT 2 cut(s) 164, 777
Bst6I CTCTTC 1 cut(s) 1050
BstACI GRCGYC 2 cut(s) 24, 209
BstBI TTCGAA 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 889
BstDEI CTNAG 4 cut(s) 282, 299, 501, 507
BstDSI CCRYGG 1 cut(s) 704
BstF5I GGATG 4 cut(s) 18, 157, 283, 821
BstFNI CGCG 1 cut(s) 474
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 3 cut(s) 26, 474, 884
BstKTI GATC 2 cut(s) 581, 978
BstMAI GTCTC 4 cut(s) 200, 490, 674, 806
BstMBI GATC 2 cut(s) 578, 975
BstMWI GCNNNNNNNGC 6 cut(s) 71, 287, 338, 427, 436, 888
BstNI CCWGG 2 cut(s) 172, 1050
BstSCI CCNGG 2 cut(s) 170, 1048
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 4 cut(s) 76, 319, 891, 896
BstX2I RGATCY 1 cut(s) 975
BstYI RGATCY 1 cut(s) 975
Bsu15I ATCGAT 1 cut(s) 371
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 2 cut(s) 622, 1031
BsuTUI ATCGAT 1 cut(s) 371
BtgI CCRYGG 1 cut(s) 704
BtgZI GCGATG 1 cut(s) 52
BtrI CACGTC 1 cut(s) 266
BtsCI GGATG 4 cut(s) 18, 157, 283, 821
BtsIMutI CAGTG 2 cut(s) 773, 987
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 1 cut(s) 889
CfoI GCGC 3 cut(s) 26, 474, 884
Cfr10I RCCGGY 1 cut(s) 1031
ClaI ATCGAT 1 cut(s) 371
CspCI CAANNNNNGTGG 2 cut(s) 1015, 1050
CviAII CATG 2 cut(s) 236, 838
DdeI CTNAG 4 cut(s) 282, 299, 501, 507
DinI GGCGCC 1 cut(s) 25
DpnI GATC 2 cut(s) 580, 977
DpnII GATC 2 cut(s) 578, 975
Eam1104I CTCTTC 1 cut(s) 1050
EarI CTCTTC 1 cut(s) 1050
Eco24I GRGCYC 2 cut(s) 235, 1045
EcoRII CCWGG 2 cut(s) 170, 1048
EcoT38I GRGCYC 2 cut(s) 235, 1045
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
Esp3I CGTCTC 2 cut(s) 200, 674
FaeI CATG 2 cut(s) 239, 841
FaiI YATR 8 cut(s) 10, 158, 237, 650, 726, 753, 839, 939
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 1 cut(s) 722
FatI CATG 2 cut(s) 235, 837
FauI CCCGC 1 cut(s) 702
Fnu4HI GCNGC 5 cut(s) 72, 90, 333, 880, 885
FokI GGATG 4 cut(s) 25, 164, 290, 808
FriOI GRGCYC 2 cut(s) 235, 1045
Fsp4HI GCNGC 5 cut(s) 72, 90, 333, 880, 885
FspBI CTAG 3 cut(s) 422, 806, 903
GlaI GCGC 3 cut(s) 25, 473, 883
GluI GCNGC 5 cut(s) 72, 90, 333, 880, 885
GsaI CCCAGC 1 cut(s) 1042
GsuI CTGGAG 1 cut(s) 801
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 2 cut(s) 622, 1031
HapII CCGG 1 cut(s) 1032
HhaI GCGC 3 cut(s) 26, 474, 884
Hin1I GRCGYC 2 cut(s) 24, 209
Hin1II CATG 2 cut(s) 239, 841
Hin6I GCGC 3 cut(s) 24, 472, 882
HinP1I GCGC 3 cut(s) 24, 472, 882
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 4 cut(s) 83, 368, 446, 790
HpaII CCGG 1 cut(s) 1032
Hpy188I TCNGA 2 cut(s) 151, 948
Hpy188III TCNNGA 7 cut(s) 566, 582, 641, 731, 765, 830, 903
HpyAV CCTTC 3 cut(s) 103, 410, 538
HpyCH4III ACNGT 2 cut(s) 164, 777
HpyCH4IV ACGT 2 cut(s) 209, 265
HpyCH4V TGCA 2 cut(s) 384, 857
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 287, 338, 427, 436, 888
HpyF3I CTNAG 4 cut(s) 282, 299, 501, 507
HpySE526I ACGT 2 cut(s) 209, 265
Hsp92I GRCGYC 2 cut(s) 24, 209
Hsp92II CATG 2 cut(s) 239, 841
HspAI GCGC 3 cut(s) 24, 472, 882
KasI GGCGCC 1 cut(s) 23
Kzo9I GATC 2 cut(s) 578, 975
LguI GCTCTTC 1 cut(s) 1050
Lsp1109I GCAGC 4 cut(s) 76, 319, 891, 896
LweI GCATC 6 cut(s) 52, 142, 268, 724, 830, 844
MaeI CTAG 3 cut(s) 422, 806, 903
MaeII ACGT 2 cut(s) 209, 265
MaeIII GTNAC 3 cut(s) 164, 302, 656
MalI GATC 2 cut(s) 580, 977
MboI GATC 2 cut(s) 578, 975
MboII GAAGA 6 cut(s) 466, 605, 620, 785, 799, 1037
MflI RGATCY 1 cut(s) 975
MhlI GDGCHC 3 cut(s) 235, 271, 1045
MluCI AATT 7 cut(s) 256, 291, 399, 721, 865, 871, 958
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 1 cut(s) 1032
MspR9I CCNGG 2 cut(s) 172, 1050
MvaI CCWGG 2 cut(s) 172, 1050
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 6 cut(s) 71, 287, 338, 427, 436, 888
NarI GGCGCC 1 cut(s) 24
NdeII GATC 2 cut(s) 578, 975
NlaIII CATG 2 cut(s) 239, 841
NlaIV GGNNCC 3 cut(s) 25, 898, 977
NmuCI GTSAC 1 cut(s) 656
NspV TTCGAA 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 1050
PfeI GAWTC 3 cut(s) 83, 368, 790
PkrI GCNGC 5 cut(s) 73, 91, 334, 881, 886
PleI GAGTC 1 cut(s) 454
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 454
Psp6I CCWGG 2 cut(s) 170, 1048
PspFI CCCAGC 1 cut(s) 1038
PspGI CCWGG 2 cut(s) 170, 1048
PspN4I GGNNCC 3 cut(s) 25, 898, 977
PsuI RGATCY 1 cut(s) 975
PvuII CAGCTG 1 cut(s) 887
SapI GCTCTTC 1 cut(s) 1050
SatI GCNGC 5 cut(s) 72, 90, 333, 880, 885
Sau3AI GATC 2 cut(s) 578, 975
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 2 cut(s) 172, 1050
SduI GDGCHC 3 cut(s) 235, 271, 1045
SfaNI GCATC 6 cut(s) 52, 142, 268, 724, 830, 844
SfoI GGCGCC 1 cut(s) 25
SfuI TTCGAA 1 cut(s) 224
SmlI CTYRAG 2 cut(s) 101, 480
SmoI CTYRAG 2 cut(s) 101, 480
Sse9I AATT 7 cut(s) 256, 291, 399, 721, 865, 871, 958
SsiI CCGC 2 cut(s) 72, 695
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 3 cut(s) 422, 806, 903
StyD4I CCNGG 2 cut(s) 170, 1048
TaaI ACNGT 2 cut(s) 164, 777
TaiI ACGT 2 cut(s) 212, 268
TaqI TCGA 4 cut(s) 224, 371, 653, 666
TasI AATT 7 cut(s) 256, 291, 399, 721, 865, 871, 958
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 3 cut(s) 83, 368, 790
TscAI CASTG 2 cut(s) 780, 987
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 4 cut(s) 89, 332, 879, 884
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 4 cut(s) 429, 605, 768, 952
TspGWI ACGGA 2 cut(s) 290, 698
TspRI CASTG 2 cut(s) 780, 987
XapI RAATTY 1 cut(s) 865
XbaI TCTAGA 1 cut(s) 902
XspI CTAG 3 cut(s) 422, 806, 903
ZraI GACGTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.