Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003427

Physical Location & Seq

Genomic Coordinates Reverse (-)

46714731 .. 46718186

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G573100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCACTATTGATGGAAAAGGGGTCTGAACCCCAAACCGAAAGCGAAAGAGCTGACCTTGATGCCATAGCCGCTCTCAAAGAAAATACTGCTATTGAACTCAAGGACAAGGGTAACGAGTATGTGAAGATGGGCAAAAAGCACTTCGCTGATGCCATAGATTGCTACACGAGAGCAATAAATCAGCAAGCTTTGAGTGACTCTGACACCTCTGTTCTCTTTTCAAATAGGGCCCATGTCAATCTTTTACTTGGTAACTACAGACGTGCTCTTACTGATGCTGAGGACGCAATTAAGCTCTGTTCCACTAATGTCAAGGCTTTGTACCGAGCTGCCAAAGCGTCTTTTGCATTGAACTTGTTGCCTGAATCAACTTTGCATTGCCAAAATGGGATTAAGCATGACCCAAGTAACGAACAGCTAAAGAAGCTGTTAAGGCAGATTGAGTCAAAGAAGATGGAACACCAACAGCGTGAGGCTCAAGTTTCCAAGGCTATATCAGAGGCTAAGGACCTTGTTTCCGCGATCAAAAGTAGAGGACTGAAAATTGGGAAGGCAATGTATCAAGAACTTACAGGATTAAGAAAACCTGTATTAGATAAGAATAATATTCTACATTGGCCAGTTCTGCTGCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGTGAGACTGAAATGTTGTCAGCTCATCTGGACATGATGTTTTCAGAAAGCTGCAAGCCTTTGTCATGGGATCAGGAACACAATTACACTCGTGAAGCTGTTGAATTATACTATGAAGCAGGTTCAGGAGTTTCTCTGTCAACAACAAAGATTCTTCGTTGTCTCTTAGAGGGCACTGCAGCTTCTCATGTGGAAAACATCGGTGATGAGGAAAATGATGCAAATGATAATTCTAATGATGGCAGCTCAGCAGGCAAAGGTTCCTCTAAATGGGTGAAAGTAAATGAGAAAAGAACACTTCATGATGTTCTGAAAGAACCTAACTTTGTTATTCCAGGGATCCCAGTGTTTTTTGTTGTTTCTAAACGTTCCAGCTTCTATAAAGAGTTCAAAGCTGGGAAATGGGCTCCTCCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19 TPR_8

Protein Analysis

365

Amino Acids

40.66

Weight (kDa)

6.11

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04130 AT1G04130
fragaria_vesca	FvH4_2g20260 FvH4_2g20260 FvH4_2g20260
malus_domestica	MD05G1186300.v1.1 MD05G1186500.v1.1 MD10G1174200.v1.1 MD10G1174300.v1.1
prunus_persica	Prupe.1G573100_v2.0.a1 Prupe.8G213100_v2.0.a1
pyrus_communis	pycom10g15020 pycom10g15030
rosa_chinensis	RchiOBHm_Chr6g0286031 RchiOBHm_Chr6g0286041
rosa_laevigata	RLG00000012587 RLG00000012588
rosa_multiflora	Rmu_co8274415.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230420 Rroxscaffold_3G00250000 Rroxscaffold_7G00182510
rosa_rugosa	Rorug06G0178400 Rorug06G0178500
rosa_samantha	Rh5CG093800 Rh6AG290400 Rh6AG290500 Rh6BG107700 Rh6BG293900 Rh6BG294000 Rh6CG293400 Rh6CG293500 Rh6DG285500 Rh6DG285600 Rh7CG476900 Rh7DG446100
rosa_wichuraiana	Rw6G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	785
AccBSI	CCGCTC	1 cut(s)	74
AccII	CGCG	1 cut(s)	524
AciI	CCGC	2 cut(s)	72, 522
AclI	AACGTT	1 cut(s)	1042
AclWI	GGATC	3 cut(s)	753, 1009, 1022
AcoI	YGGCCR	1 cut(s)	620
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	945
AgsI	TTSAA	5 cut(s)	98, 225, 355, 779, 1066
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	1009
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	2 cut(s)	674, 842
AlwI	GGATC	3 cut(s)	753, 1009, 1022
AoxI	GGCC	2 cut(s)	231, 620
ApaI	GGGCCC	1 cut(s)	235
ApeKI	GCWGC	5 cut(s)	332, 631, 726, 854, 918
AspS9I	GGNCC	3 cut(s)	231, 232, 511
AsuHPI	GGTGA	2 cut(s)	890, 961
AvaII	GGWCC	1 cut(s)	511
BaeGI	GKGCMC	2 cut(s)	235, 851
BalI	TGGCCA	1 cut(s)	622
BamHI	GGATCC	1 cut(s)	1014
BanII	GRGCYC	2 cut(s)	235, 1084
BauI	CACGAG	2 cut(s)	169, 765
Bbv12I	GWGCWC	1 cut(s)	271
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	5 cut(s)	319, 618, 713, 866, 930
BccI	CCATC	4 cut(s)	7, 124, 451, 908
BciT130I	CCWGG	1 cut(s)	1011
BcoDI	GTCTC	2 cut(s)	674, 842
BfmI	CTRYAG	2 cut(s)	259, 852
BfuAI	ACCTGC	1 cut(s)	785
BisI	GCNGC	6 cut(s)	72, 333, 632, 727, 855, 919
BlpI	GCTNAGC	1 cut(s)	922
BlsI	GCNGC	6 cut(s)	73, 334, 633, 728, 856, 920
Bme1390I	CCNGG	1 cut(s)	1011
Bme18I	GGWCC	1 cut(s)	511
BmgBI	CACGTC	1 cut(s)	266
BmgT120I	GGNCC	3 cut(s)	231, 232, 511
BmiI	GGNNCC	4 cut(s)	233, 937, 1016, 1083
BmrFI	CCNGG	1 cut(s)	1011
BmrI	ACTGGG	1 cut(s)	1013
BmsI	GCATC	4 cut(s)	52, 142, 268, 883
BmuI	ACTGGG	1 cut(s)	1013
Bpu10I	CCTNAGC	2 cut(s)	282, 507
Bpu1102I	GCTNAGC	1 cut(s)	922
BpuEI	CTTGAG	2 cut(s)	86, 465
BsaJI	CCNNGG	2 cut(s)	489, 1010
Bsc4I	CCNNNNNNNGG	1 cut(s)	945
Bse1I	ACTGG	3 cut(s)	623, 654, 1019
Bse3DI	GCAATG	2 cut(s)	379, 564
BseBI	CCWGG	1 cut(s)	1011
BseDI	CCNNGG	2 cut(s)	489, 1010
BseLI	CCNNNNNNNGG	1 cut(s)	945
BseMI	GCAATG	2 cut(s)	379, 564
BseMII	CTCAG	2 cut(s)	273, 936
BseNI	ACTGG	3 cut(s)	623, 654, 1019
BseRI	GAGGAG	1 cut(s)	1074
BseSI	GKGCMC	2 cut(s)	235, 851
BseXI	GCAGC	5 cut(s)	319, 618, 713, 866, 930
BseYI	CCCAGC	1 cut(s)	1070
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	2 cut(s)	233, 622
BsiHKAI	GWGCWC	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	945
BsmAI	GTCTC	2 cut(s)	674, 842
BsnI	GGCC	2 cut(s)	233, 622
Bsp120I	GGGCCC	1 cut(s)	231
Bsp1286I	GDGCHC	4 cut(s)	235, 271, 851, 1084
Bsp143I	GATC	3 cut(s)	525, 745, 1014
Bsp1720I	GCTNAGC	1 cut(s)	922
BspACI	CCGC	2 cut(s)	72, 522
BspANI	GGCC	2 cut(s)	233, 622
BspCNI	CTCAG	2 cut(s)	274, 935
BspFNI	CGCG	1 cut(s)	524
BspHI	TCATGA	1 cut(s)	976
BspLI	GGNNCC	4 cut(s)	233, 937, 1016, 1083
BspMAI	CTGCAG	1 cut(s)	856
BspMI	ACCTGC	1 cut(s)	785
BspPI	GGATC	3 cut(s)	753, 1009, 1022
BsrBI	CCGCTC	1 cut(s)	74
BsrDI	GCAATG	2 cut(s)	379, 564
BsrI	ACTGG	3 cut(s)	623, 654, 1019
BssECI	CCNNGG	2 cut(s)	489, 1010
BssMI	GATC	3 cut(s)	525, 745, 1014
BssSI	CACGAG	2 cut(s)	169, 765
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	2 cut(s)	169, 765
Bst2UI	CCWGG	1 cut(s)	1011
BstC8I	GCNNGC	3 cut(s)	189, 731, 928
BstDEI	CTNAG	4 cut(s)	282, 507, 841, 922
BstFNI	CGCG	1 cut(s)	524
BstKTI	GATC	3 cut(s)	528, 748, 1017
BstMAI	GTCTC	2 cut(s)	674, 842
BstMBI	GATC	3 cut(s)	525, 745, 1014
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 287, 338, 347, 427, 436, 628, 927
BstNI	CCWGG	1 cut(s)	1011
BstSCI	CCNGG	1 cut(s)	1009
BstSFI	CTRYAG	2 cut(s)	259, 852
BstSLI	GKGCMC	2 cut(s)	235, 851
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	5 cut(s)	319, 618, 713, 866, 930
BstX2I	RGATCY	1 cut(s)	1014
BstYI	RGATCY	1 cut(s)	1014
BsuRI	GGCC	2 cut(s)	233, 622
BtrI	CACGTC	1 cut(s)	266
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	3 cut(s)	661, 849, 1026
BveI	ACCTGC	1 cut(s)	785
Cac8I	GCNNGC	3 cut(s)	189, 731, 928
CciI	TCATGA	1 cut(s)	976
Cfr13I	GGNCC	3 cut(s)	231, 232, 511
CseI	GACGC	2 cut(s)	296, 330
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	6 cut(s)	236, 401, 709, 741, 863, 977
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	4 cut(s)	282, 507, 841, 922
DpnI	GATC	3 cut(s)	527, 747, 1016
DpnII	GATC	3 cut(s)	525, 745, 1014
EaeI	YGGCCR	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	2 cut(s)	235, 1084
Eco47I	GGWCC	1 cut(s)	511
EcoO109I	RGGNCCY	2 cut(s)	231, 511
EcoRII	CCWGG	1 cut(s)	1009
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	2 cut(s)	235, 1084
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	6 cut(s)	239, 404, 712, 744, 866, 980
FatI	CATG	6 cut(s)	235, 400, 708, 740, 862, 976
Fnu4HI	GCNGC	6 cut(s)	72, 333, 632, 727, 855, 919
FriOI	GRGCYC	2 cut(s)	235, 1084
Fsp4HI	GCNGC	6 cut(s)	72, 333, 632, 727, 855, 919
GluI	GCNGC	6 cut(s)	72, 333, 632, 727, 855, 919
GsaI	CCCAGC	1 cut(s)	1074
HaeIII	GGCC	2 cut(s)	233, 622
HgaI	GACGC	2 cut(s)	296, 330
Hin1II	CATG	6 cut(s)	239, 404, 712, 744, 866, 980
HincII	GTYRAC	1 cut(s)	816
HindII	GTYRAC	1 cut(s)	816
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	4 cut(s)	200, 368, 446, 826
HphI	GGTGA	2 cut(s)	890, 961
Hpy166II	GTNNAC	1 cut(s)	816
Hpy188I	TCNGA	5 cut(s)	28, 205, 502, 721, 987
Hpy188III	TCNNGA	6 cut(s)	566, 704, 749, 767, 801, 977
Hpy8I	GTNNAC	1 cut(s)	816
HpyAV	CCTTC	1 cut(s)	547
HpyCH4IV	ACGT	2 cut(s)	265, 1042
HpyCH4V	TGCA	6 cut(s)	350, 379, 641, 729, 854, 896
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 287, 338, 347, 427, 436, 628, 927
HpyF3I	CTNAG	4 cut(s)	282, 507, 841, 922
HpySE526I	ACGT	2 cut(s)	265, 1042
Hsp92II	CATG	6 cut(s)	239, 404, 712, 744, 866, 980
Kzo9I	GATC	3 cut(s)	525, 745, 1014
LmnI	GCTCC	1 cut(s)	1087
Lsp1109I	GCAGC	5 cut(s)	319, 618, 713, 866, 930
LweI	GCATC	4 cut(s)	52, 142, 268, 883
MaeII	ACGT	2 cut(s)	265, 1042
MaeIII	GTNAC	5 cut(s)	113, 197, 254, 410, 656
MalI	GATC	3 cut(s)	527, 747, 1016
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	3 cut(s)	525, 745, 1014
MboII	GAAGA	3 cut(s)	139, 466, 821
MflI	RGATCY	1 cut(s)	1014
MhlI	GDGCHC	4 cut(s)	235, 271, 851, 1084
MlsI	TGGCCA	1 cut(s)	622
MluCI	AATT	5 cut(s)	291, 546, 757, 779, 904
MluNI	TGGCCA	1 cut(s)	622
MlyI	GAGTC	2 cut(s)	194, 455
Mox20I	TGGCCA	1 cut(s)	622
MscI	TGGCCA	1 cut(s)	622
MseI	TTAA	4 cut(s)	294, 396, 434, 581
Msp20I	TGGCCA	1 cut(s)	622
MspR9I	CCNGG	1 cut(s)	1011
MvaI	CCWGG	1 cut(s)	1011
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	8 cut(s)	71, 287, 338, 347, 427, 436, 628, 927
NdeII	GATC	3 cut(s)	525, 745, 1014
NlaIII	CATG	6 cut(s)	239, 404, 712, 744, 866, 980
NlaIV	GGNNCC	4 cut(s)	233, 937, 1016, 1083
NmuCI	GTSAC	2 cut(s)	197, 656
PagI	TCATGA	1 cut(s)	976
PfeI	GAWTC	2 cut(s)	368, 826
PkrI	GCNGC	6 cut(s)	73, 334, 633, 728, 856, 920
PleI	GAGTC	2 cut(s)	194, 454
PpsI	GAGTC	2 cut(s)	194, 454
PpuMI	RGGWCCY	1 cut(s)	511
Psp1406I	AACGTT	1 cut(s)	1042
Psp5II	RGGWCCY	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	1009
PspFI	CCCAGC	1 cut(s)	1070
PspGI	CCWGG	1 cut(s)	1009
PspN4I	GGNNCC	4 cut(s)	233, 937, 1016, 1083
PspOMI	GGGCCC	1 cut(s)	231
PspPI	GGNCC	3 cut(s)	231, 232, 511
PspPPI	RGGWCCY	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	856
PsuI	RGATCY	1 cut(s)	1014
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SaqAI	TTAA	4 cut(s)	294, 396, 434, 581
SatI	GCNGC	6 cut(s)	72, 333, 632, 727, 855, 919
Sau3AI	GATC	3 cut(s)	525, 745, 1014
Sau96I	GGNCC	3 cut(s)	231, 232, 511
SchI	GAGTC	2 cut(s)	194, 455
ScrFI	CCNGG	1 cut(s)	1011
SduI	GDGCHC	4 cut(s)	235, 271, 851, 1084
SfaNI	GCATC	4 cut(s)	52, 142, 268, 883
SfcI	CTRYAG	2 cut(s)	259, 852
SinI	GGWCC	1 cut(s)	511
SmlI	CTYRAG	2 cut(s)	101, 480
SmoI	CTYRAG	2 cut(s)	101, 480
Sse9I	AATT	5 cut(s)	291, 546, 757, 779, 904
SsiI	CCGC	2 cut(s)	72, 522
SspI	AATATT	1 cut(s)	610
StyD4I	CCNGG	1 cut(s)	1009
StyI	CCWWGG	1 cut(s)	489
TaiI	ACGT	2 cut(s)	268, 1045
TasI	AATT	5 cut(s)	291, 546, 757, 779, 904
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	368, 826
Tru1I	TTAA	4 cut(s)	294, 396, 434, 581
Tru9I	TTAA	4 cut(s)	294, 396, 434, 581
TscAI	CASTG	3 cut(s)	661, 856, 1026
TseFI	GTSAC	2 cut(s)	197, 656
TseI	GCWGC	5 cut(s)	332, 631, 726, 854, 918
Tsp45I	GTSAC	2 cut(s)	197, 656
TspDTI	ATGAA	3 cut(s)	652, 804, 965
TspRI	CASTG	3 cut(s)	661, 856, 1026
VpaK11BI	GGWCC	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.