Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003427

Physical Location & Seq

Genomic Coordinates Reverse (-)

18358646 .. 18359416

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGCTGCTGATGGAAAAGGGGTCCCAACCCCAAACCGAAAGCGAAAAGGCCGACCTTGACGCCATCGCCGCCCTCAAAGAAAGCGCTGCCATTGAACTCAAGGGTAAAAAGCATTTCTCTGAAGCCATAGATTGCTACACGAGGGCAATCAATCAGCAAGCTTTGAGCGATTCCGACACCTCAATTCTCTTTTCGAATCGAGCCCATGTCAATCTTTTGCTCGGTAACTACAGGCGCGCTCTTACTGATGCCGAGGAAGCAATCAAGCTCTGCCCCACGAATCTCAAGGTGCTCCGTTTTCGCCACGTGGTGGTTGTTGTCGTTGTTGTTCTGAGCTGGGCTTTGTACCGAGCTGCGAAAGCGTCTTTTTCGTTGAACTTGTTGTCTGAATCAACATCGCATTGCGAAAACGGGCTTAAACATGACCCGGGTAACGAGGAGCTGAAGAAGCTGTTGAGGCAGATTGAATCGAAGAAGATGGAACATGAGCAGCGTGAGGCTCAAGTTTCCAAGGCTATTGCGGAGGCTAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19 TPR_8

Protein Analysis

180

Amino Acids

19.91

Weight (kDa)

7.75

Isoelectric Point (pI)

30.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04130 AT1G04130
fragaria_vesca	FvH4_2g20260 FvH4_2g20260 FvH4_2g20260
malus_domestica	MD05G1186300.v1.1 MD05G1186500.v1.1 MD10G1174200.v1.1 MD10G1174300.v1.1
prunus_persica	Prupe.1G573100_v2.0.a1 Prupe.8G213100_v2.0.a1
pyrus_communis	pycom10g15020 pycom10g15030
rosa_chinensis	RchiOBHm_Chr6g0286031 RchiOBHm_Chr6g0286041
rosa_laevigata	RLG00000012587 RLG00000012588
rosa_multiflora	Rmu_co8274415.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230420 Rroxscaffold_3G00250000 Rroxscaffold_7G00182510
rosa_rugosa	Rorug06G0178400 Rorug06G0178500
rosa_samantha	Rh5CG093800 Rh6AG290400 Rh6AG290500 Rh6BG107700 Rh6BG293900 Rh6BG294000 Rh6CG293400 Rh6CG293500 Rh6DG285500 Rh6DG285600 Rh7CG476900 Rh7DG446100
rosa_wichuraiana	Rw6G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccII	CGCG	1 cut(s)	240
AciI	CCGC	2 cut(s)	72, 524
AcuI	CTGAAG	2 cut(s)	144, 467
AcvI	CACGTG	1 cut(s)	310
AcyI	GRCGYC	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	350
AfeI	AGCGCT	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	3 cut(s)	98, 379, 470
AluBI	AGCT	6 cut(s)	164, 271, 339, 356, 445, 454
AluI	AGCT	6 cut(s)	164, 271, 339, 356, 445, 454
Alw21I	GWGCWC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	430
Aor51HI	AGCGCT	1 cut(s)	88
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	4 cut(s)	7, 89, 356, 493
AspLEI	GCGC	4 cut(s)	7, 89, 240, 242
AspS9I	GGNCC	1 cut(s)	24
AsuC2I	CCSGG	2 cut(s)	431, 432
AsuII	TTCGAA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	208
BauI	CACGAG	1 cut(s)	142
BbrPI	CACGTG	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	3 cut(s)	76, 343, 505
BccI	CCATC	3 cut(s)	7, 74, 475
BcnI	CCSGG	2 cut(s)	431, 432
BfmI	CTRYAG	1 cut(s)	232
BfoI	RGCGCY	2 cut(s)	8, 90
BisI	GCNGC	5 cut(s)	8, 72, 90, 357, 494
BlsI	GCNGC	5 cut(s)	9, 73, 91, 358, 495
Bme1390I	CCNGG	2 cut(s)	431, 432
Bme18I	GGWCC	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	25, 26
BmrFI	CCNGG	2 cut(s)	431, 432
BmsI	GCATC	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	531
Bpu14I	TTCGAA	1 cut(s)	197
BpuEI	CTTGAG	3 cut(s)	86, 272, 489
BpuMI	CCSGG	2 cut(s)	431, 432
BsaAI	YACGTR	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	3 cut(s)	255, 430, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	403
BseDI	CCNNGG	3 cut(s)	255, 430, 513
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	326
BsePI	GCGCGC	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	3 cut(s)	76, 343, 505
BseYI	CCCAGC	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	430
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	208, 297
BspACI	CCGC	2 cut(s)	72, 524
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	25, 26
BspT104I	TTCGAA	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	403
BssECI	CCNNGG	3 cut(s)	255, 430, 513
BssHII	GCGCGC	1 cut(s)	238
BssNI	GRCGYC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	142
BstACI	GRCGYC	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	162, 240
BstDEI	CTNAG	2 cut(s)	335, 531
BstFNI	CGCG	1 cut(s)	240
BstH2I	RGCGCY	2 cut(s)	8, 90
BstHHI	GCGC	4 cut(s)	7, 89, 240, 242
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 260, 362, 451, 460
BstSCI	CCNGG	2 cut(s)	429, 430
BstSFI	CTRYAG	1 cut(s)	232
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	76, 343, 505
BsuRI	GGCC	1 cut(s)	53
BtgZI	GCGATG	2 cut(s)	52, 384
Cac8I	GCNNGC	2 cut(s)	162, 240
CfoI	GCGC	4 cut(s)	7, 89, 240, 242
Cfr13I	GGNCC	1 cut(s)	24
Cfr9I	CCCGGG	1 cut(s)	430
CseI	GACGC	2 cut(s)	71, 354
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	3 cut(s)	209, 425, 488
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	2 cut(s)	335, 531
DraIII	CACNNNGTG	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	24
Eco47III	AGCGCT	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	144, 467
Eco72I	CACGTG	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	430
EcoO109I	RGGNCCY	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	3 cut(s)	212, 428, 491
FaiI	YATR	4 cut(s)	131, 210, 426, 489
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	3 cut(s)	208, 424, 487
Fnu4HI	GCNGC	5 cut(s)	8, 72, 90, 357, 494
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	5 cut(s)	8, 72, 90, 357, 494
GlaI	GCGC	4 cut(s)	6, 88, 239, 241
GluI	GCNGC	5 cut(s)	8, 72, 90, 357, 494
GsaI	CCCAGC	1 cut(s)	343
HaeII	RGCGCY	2 cut(s)	8, 90
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	431
HgaI	GACGC	2 cut(s)	71, 354
HhaI	GCGC	4 cut(s)	7, 89, 240, 242
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	3 cut(s)	212, 428, 491
Hin6I	GCGC	4 cut(s)	5, 87, 238, 240
HinP1I	GCGC	4 cut(s)	5, 87, 238, 240
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	5 cut(s)	173, 199, 283, 392, 470
HpaII	CCGG	1 cut(s)	431
Hpy188I	TCNGA	4 cut(s)	124, 178, 336, 391
HpyCH4IV	ACGT	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 260, 362, 451, 460
HpyF3I	CTNAG	2 cut(s)	335, 531
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	212, 428, 491
HspAI	GCGC	4 cut(s)	5, 87, 238, 240
KflI	GGGWCCC	1 cut(s)	24
LmnI	GCTCC	2 cut(s)	300, 442
LpnPI	CCDG	3 cut(s)	220, 325, 444
Lsp1109I	GCAGC	3 cut(s)	76, 343, 505
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	227, 434
MboII	GAAGA	3 cut(s)	460, 487, 490
MhlI	GDGCHC	2 cut(s)	208, 297
MluCI	AATT	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	8 cut(s)	86, 138, 193, 250, 433, 453, 493, 520
MseI	TTAA	1 cut(s)	420
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	431, 432
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	5 cut(s)	71, 260, 362, 451, 460
NciI	CCSGG	2 cut(s)	431, 432
NlaIII	CATG	3 cut(s)	212, 428, 491
NlaIV	GGNNCC	2 cut(s)	25, 26
NmeAIII	GCCGAG	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	197
PauI	GCGCGC	1 cut(s)	238
PfeI	GAWTC	5 cut(s)	173, 199, 283, 392, 470
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	5 cut(s)	9, 73, 91, 358, 495
PmaCI	CACGTG	1 cut(s)	310
PmlI	CACGTG	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	24
PspCI	CACGTG	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	25, 26
PspPI	GGNCC	1 cut(s)	24
PspPPI	RGGWCCY	1 cut(s)	24
PteI	GCGCGC	1 cut(s)	238
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	5 cut(s)	8, 72, 90, 357, 494
Sau96I	GGNCC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	431, 432
SduI	GDGCHC	2 cut(s)	208, 297
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	1 cut(s)	24
SmaI	CCCGGG	1 cut(s)	432
SmlI	CTYRAG	3 cut(s)	101, 287, 504
SmoI	CTYRAG	3 cut(s)	101, 287, 504
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	2 cut(s)	72, 524
StyD4I	CCNGG	2 cut(s)	429, 430
StyI	CCWWGG	1 cut(s)	513
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	197, 202, 473
TasI	AATT	1 cut(s)	186
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	5 cut(s)	173, 199, 283, 392, 470
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseI	GCWGC	4 cut(s)	7, 89, 356, 493
TspGWI	ACGGA	1 cut(s)	287
TspMI	CCCGGG	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	24
XmaI	CCCGGG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.