FvH4_2g20260

Tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003427
Physical Location & Seq
Reverse (-)
17032318 .. 17036067
3750 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20260.t1

Sequence Viewer

Length: 1095 bp
ATGGCACTATGGATGGAGAAAGGCGCCGAACCCCAAACCGAAAGCGAAAGGGCCGACCTTGACGCCATCGCCGCCCTCAAAGAATCTGCTGCTATTGAACTCAAGGAGAAGGGCAATGAGTTTGTGAAAAAGGGTAAGAAGCATTACTCGGATGCCATAGACTGTTACACCAGGGCTATCAATAACCAAGCTTTGAGCGACCCAGAGACGTCTGTTTTGTTTTCCAATAGAGCCCATGTCAATCTTTTGCTTGGTAACTACAGACGCGCTCTTACTGATGCTGAGGAGGCTATTAGGCTCAGTAACAGTAATGTTAAGGCATTGTACCGAGCTGCGAAAGCCTGTTTGTCATTGAACTTGTTGGCTGAATCGATTTCGCATTGTAAAAAAGGGCTTGAAGTTGACCCAAGTAATGAAGGGTTAGAGAAGCTGTTAGGGCAGGTTGAGGCTAAGAAGATGGAACTTGAACAGCGGGAGGCTCAAGTCTCCAAGGCTCTTTCTGAGGCTAAGGACATTGTTTCTGCGATTGAAAAGAGAGGCTTGAAGGTTGGGAAGCCAATGTATCAAGAACTTACTGGATCAAGAAAGCCTGTATTGGACAAGAATAGTATTCTTCATTGGCCTGTTCTTCTTTTGTATCCAGAGGTTATGTCCAGTGACTTTATCGAGGATTTCTGTGAGACGGAAATGTTCTCGCCTCATCTTGATATGATGTTTTCAGAAAGCGCCCCTCCTTTGCCATGGGATGAGGAACACAATTATGCCCGTGATGCTGTTGAAATATACTATGAAGCTAAATCGGGAGATCCACTGTCAAAGACAAAGATTCTTCGGTATCTCCTAGAGGGAACTCCAGCGTCCAATTTAGAAAGCATGGTTGACAAGGAAAAAGAAGCAACTGAAAATTCTAAGTTTGGCAGCTCAGCAGGCAAAGGTTCCTCCAAATGGGTCAAAGTAAATGAGAAAAGAACACTCTACGATATTCTAAAAGAAACTAATTTCATTATTCAAGGGATTCCAGTATTCGCTGTTGTTTCTAAAAGATCCAGCTTCTACAAAGAGTTCAGAGCCGGTGGCTGGGCTCTTCCACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_19 TPR_8

Protein Analysis

365

Amino Acids

40.76

Weight (kDa)

5.74

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Wheel PF18972 200 - 269 2.1e-15 Cns1/TTC4 Wheel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 430
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 1 cut(s) 267
AciI CCGC 2 cut(s) 72, 472
AclWI GGATC 3 cut(s) 586, 800, 1038
AcsI RAATTY 1 cut(s) 904
AcyI GRCGYC 3 cut(s) 24, 63, 209
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 945, 1077
AgsI TTSAA 8 cut(s) 98, 355, 398, 467, 530, 544, 779, 1010
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 6 cut(s) 191, 332, 430, 794, 921, 1050
AluI AGCT 6 cut(s) 191, 332, 430, 794, 921, 1050
Alw26I GTCTC 3 cut(s) 200, 490, 674
AlwI GGATC 3 cut(s) 586, 800, 1038
AoxI GGCC 2 cut(s) 51, 620
ApeKI GCWGC 3 cut(s) 89, 332, 918
ApoI RAATTY 1 cut(s) 904
ArsI GACNNNNNNTTYG 2 cut(s) 199, 231
AspLEI GCGC 3 cut(s) 26, 269, 728
AspS9I GGNCC 1 cut(s) 51
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 2 cut(s) 235, 1084
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 3 cut(s) 76, 319, 930
BccI CCATC 3 cut(s) 7, 74, 451
BciT130I CCWGG 1 cut(s) 172
BciVI GTATCC 1 cut(s) 648
BcoDI GTCTC 3 cut(s) 200, 490, 674
BfaI CTAG 1 cut(s) 842
BfmI CTRYAG 1 cut(s) 259
BfoI RGCGCY 2 cut(s) 27, 729
BfuAI ACCTGC 1 cut(s) 430
BfuI GTATCC 1 cut(s) 648
BisI GCNGC 4 cut(s) 72, 90, 333, 919
BlpI GCTNAGC 1 cut(s) 922
BlsI GCNGC 4 cut(s) 73, 91, 334, 920
Bme1390I CCNGG 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 25, 937
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 3 cut(s) 142, 268, 760
BpmI CTGGAG 1 cut(s) 837
Bpu10I CCTNAGC 2 cut(s) 282, 507
Bpu1102I GCTNAGC 1 cut(s) 922
BpuEI CTTGAG 2 cut(s) 86, 465
Bsa29I ATCGAT 1 cut(s) 371
BsaHI GRCGYC 3 cut(s) 24, 63, 209
BsaJI CCNNGG 3 cut(s) 171, 489, 740
Bsc4I CCNNNNNNNGG 2 cut(s) 945, 1077
Bse118I RCCGGY 1 cut(s) 1070
Bse1I ACTGG 3 cut(s) 580, 654, 1019
Bse3DI GCAATG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 371
BseDI CCNNGG 3 cut(s) 171, 489, 740
BseGI GGATG 3 cut(s) 18, 157, 751
BseLI CCNNNNNNNGG 2 cut(s) 945, 1077
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 4 cut(s) 273, 313, 492, 936
BseNI ACTGG 3 cut(s) 580, 654, 1019
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 76, 319, 930
BseYI CCCAGC 1 cut(s) 1077
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 2 cut(s) 53, 622
BshNI GGYRCC 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 371
BsiSI CCGG 1 cut(s) 1071
BslI CCNNNNNNNGG 2 cut(s) 945, 1077
BsmAI GTCTC 3 cut(s) 200, 490, 674
BsmBI CGTCTC 2 cut(s) 200, 674
BsnI GGCC 2 cut(s) 53, 622
Bsp1286I GDGCHC 2 cut(s) 235, 1084
Bsp143I GATC 3 cut(s) 578, 805, 1043
Bsp1720I GCTNAGC 1 cut(s) 922
Bsp19I CCATGG 1 cut(s) 740
BspACI CCGC 2 cut(s) 72, 472
BspANI GGCC 2 cut(s) 53, 622
BspCNI CTCAG 4 cut(s) 274, 312, 493, 935
BspDI ATCGAT 1 cut(s) 371
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 25, 937
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 3 cut(s) 586, 800, 1038
BspQI GCTCTTC 1 cut(s) 1089
BspT107I GGYRCC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 1070
BsrI ACTGG 3 cut(s) 580, 654, 1019
BssAI RCCGGY 1 cut(s) 1070
BssECI CCNNGG 3 cut(s) 171, 489, 740
BssMI GATC 3 cut(s) 578, 805, 1043
BssNI GRCGYC 3 cut(s) 24, 63, 209
BssT1I CCWWGG 2 cut(s) 489, 740
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 4 cut(s) 164, 308, 813, 1092
Bst6I CTCTTC 1 cut(s) 1089
BstACI GRCGYC 3 cut(s) 24, 63, 209
BstC8I GCNNGC 1 cut(s) 928
BstDEI CTNAG 7 cut(s) 282, 299, 450, 501, 507, 909, 922
BstDSI CCRYGG 1 cut(s) 740
BstF5I GGATG 3 cut(s) 18, 157, 751
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 2 cut(s) 27, 729
BstHHI GCGC 3 cut(s) 26, 269, 728
BstKTI GATC 3 cut(s) 581, 808, 1046
BstMAI GTCTC 3 cut(s) 200, 490, 674
BstMBI GATC 3 cut(s) 578, 805, 1043
BstMWI GCNNNNNNNGC 6 cut(s) 71, 287, 338, 436, 770, 927
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 259
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 76, 319, 930
BstX2I RGATCY 2 cut(s) 805, 1043
BstYI RGATCY 2 cut(s) 805, 1043
Bsu15I ATCGAT 1 cut(s) 371
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 2 cut(s) 53, 622
BsuTUI ATCGAT 1 cut(s) 371
BtgI CCRYGG 1 cut(s) 740
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 3 cut(s) 18, 157, 751
BtsIMutI CAGTG 2 cut(s) 661, 809
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 1 cut(s) 928
CfoI GCGC 3 cut(s) 26, 269, 728
Cfr10I RCCGGY 1 cut(s) 1070
Cfr13I GGNCC 1 cut(s) 51
ClaI ATCGAT 1 cut(s) 371
CseI GACGC 3 cut(s) 71, 273, 846
Csp6I GTAC 1 cut(s) 325
CviAII CATG 3 cut(s) 236, 741, 874
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 7 cut(s) 282, 299, 450, 501, 507, 909, 922
DinI GGCGCC 1 cut(s) 25
DpnI GATC 3 cut(s) 580, 807, 1045
DpnII GATC 3 cut(s) 578, 805, 1043
Eam1104I CTCTTC 1 cut(s) 1089
EarI CTCTTC 1 cut(s) 1089
Eco130I CCWWGG 2 cut(s) 489, 740
Eco24I GRGCYC 2 cut(s) 235, 1084
EcoRII CCWGG 1 cut(s) 170
EcoT14I CCWWGG 2 cut(s) 489, 740
EcoT38I GRGCYC 2 cut(s) 235, 1084
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
ErhI CCWWGG 2 cut(s) 489, 740
Esp3I CGTCTC 2 cut(s) 200, 674
FaeI CATG 3 cut(s) 239, 744, 877
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FatI CATG 3 cut(s) 235, 740, 873
FauI CCCGC 1 cut(s) 465
Fnu4HI GCNGC 4 cut(s) 72, 90, 333, 919
FokI GGATG 3 cut(s) 25, 164, 758
FriOI GRGCYC 2 cut(s) 235, 1084
Fsp4HI GCNGC 4 cut(s) 72, 90, 333, 919
FspBI CTAG 1 cut(s) 842
GlaI GCGC 3 cut(s) 25, 268, 727
GluI GCNGC 4 cut(s) 72, 90, 333, 919
GsaI CCCAGC 1 cut(s) 1081
GsuI CTGGAG 1 cut(s) 837
HaeII RGCGCY 2 cut(s) 27, 729
HaeIII GGCC 2 cut(s) 53, 622
HapII CCGG 1 cut(s) 1071
HgaI GACGC 3 cut(s) 71, 273, 846
HhaI GCGC 3 cut(s) 26, 269, 728
Hin1I GRCGYC 3 cut(s) 24, 63, 209
Hin1II CATG 3 cut(s) 239, 744, 877
Hin6I GCGC 3 cut(s) 24, 267, 726
HinP1I GCGC 3 cut(s) 24, 267, 726
HincII GTYRAC 2 cut(s) 403, 880
HindII GTYRAC 2 cut(s) 403, 880
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 4 cut(s) 83, 368, 826, 1015
HpaII CCGG 1 cut(s) 1071
Hpy166II GTNNAC 2 cut(s) 403, 880
Hpy188I TCNGA 4 cut(s) 151, 502, 721, 1067
Hpy188III TCNNGA 5 cut(s) 566, 582, 641, 704, 801
Hpy8I GTNNAC 2 cut(s) 403, 880
HpyAV CCTTC 3 cut(s) 103, 410, 538
HpyCH4III ACNGT 4 cut(s) 164, 308, 813, 1092
HpyCH4IV ACGT 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 287, 338, 436, 770, 927
HpyF3I CTNAG 7 cut(s) 282, 299, 450, 501, 507, 909, 922
HpySE526I ACGT 1 cut(s) 209
Hsp92I GRCGYC 3 cut(s) 24, 63, 209
Hsp92II CATG 3 cut(s) 239, 744, 877
HspAI GCGC 3 cut(s) 24, 267, 726
KasI GGCGCC 1 cut(s) 23
Kzo9I GATC 3 cut(s) 578, 805, 1043
LguI GCTCTTC 1 cut(s) 1089
Lsp1109I GCAGC 3 cut(s) 76, 319, 930
LweI GCATC 3 cut(s) 142, 268, 760
MaeI CTAG 1 cut(s) 842
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 4 cut(s) 164, 254, 302, 656
MalI GATC 3 cut(s) 580, 807, 1045
MboI GATC 3 cut(s) 578, 805, 1043
MboII GAAGA 5 cut(s) 466, 605, 620, 821, 1076
MflI RGATCY 2 cut(s) 805, 1043
MhlI GDGCHC 2 cut(s) 235, 1084
MluCI AATT 4 cut(s) 757, 862, 904, 997
Mly113I GGCGCC 1 cut(s) 24
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 759
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 1 cut(s) 1071
MspR9I CCNGG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 172
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 6 cut(s) 71, 287, 338, 436, 770, 927
NarI GGCGCC 1 cut(s) 24
NcoI CCATGG 1 cut(s) 740
NdeII GATC 3 cut(s) 578, 805, 1043
NlaIII CATG 3 cut(s) 239, 744, 877
NlaIV GGNNCC 2 cut(s) 25, 937
NmuCI GTSAC 1 cut(s) 656
PciSI GCTCTTC 1 cut(s) 1089
PfeI GAWTC 4 cut(s) 83, 368, 826, 1015
PkrI GCNGC 4 cut(s) 73, 91, 334, 920
PluTI GGCGCC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 1077
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 25, 937
PspPI GGNCC 1 cut(s) 51
PsuI RGATCY 2 cut(s) 805, 1043
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 759
SapI GCTCTTC 1 cut(s) 1089
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 4 cut(s) 72, 90, 333, 919
Sau3AI GATC 3 cut(s) 578, 805, 1043
Sau96I GGNCC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 2 cut(s) 235, 1084
SfaNI GCATC 3 cut(s) 142, 268, 760
SfcI CTRYAG 1 cut(s) 259
SfoI GGCGCC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 759
SmlI CTYRAG 2 cut(s) 101, 480
SmoI CTYRAG 2 cut(s) 101, 480
Sse9I AATT 4 cut(s) 757, 862, 904, 997
SsiI CCGC 2 cut(s) 72, 472
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 842
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 2 cut(s) 489, 740
TaaI ACNGT 4 cut(s) 164, 308, 813, 1092
TaiI ACGT 1 cut(s) 212
TaqI TCGA 2 cut(s) 371, 666
TasI AATT 4 cut(s) 757, 862, 904, 997
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 4 cut(s) 83, 368, 826, 1015
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 2 cut(s) 661, 816
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 3 cut(s) 89, 332, 918
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 4 cut(s) 429, 605, 804, 991
TspGWI ACGGA 1 cut(s) 698
TspRI CASTG 2 cut(s) 661, 816
XapI RAATTY 1 cut(s) 904
XspI CTAG 1 cut(s) 842
ZraI GACGTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.