Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Forward (+)

2422126 .. 2423803

Gene Structure 1678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTTTCTTACGCGATTTGTCGGGAGGAGATTCTTGGCGGCTGCATCGGCGCGATCGGAGTCCACTACAGCAGCAGCAGCTGCCTCGACGATTCGGACGCCAACAAATCCACTCGAAGAGTTCTTTGAGTTCGACAGAAGCCAAGACGAAGATAAACCTGTTGTCTATGGTCGAGGTTGGAAAGCTTCAGAGCTGCGTCTCAAGTCATGGGATGATCTTCAGAAGCTGTGGTACGTTCTTCTCAAAGAGAAAAACATGTTGATGACTCAGCGTCAGATGCTTCAGGCTCAGAACATGCAGTTTCCTAACCCTGAACGCATTCCAAAGGTGAGGAGATCAATGTGCCGCATTAAGCATGTGCTGACCGAGAGAGCGATTGAAGAACCAGATTCTAGAAGATCAGCCGAGATGAAGAGAATGGTAAATGGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

144

Amino Acids

16.89

Weight (kDa)

10.06

Isoelectric Point (pI)

59.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRP-L47	PF06984	38 - 124	4.3e-37	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Ribosomal_L29	PF00831	63 - 124	4.7e-10	Ribosomal L29 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	13, 52
AciI	CCGC	2 cut(s)	38, 346
AcuI	CTGAAG	3 cut(s)	171, 203, 266
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	1 cut(s)	233
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	380
AhdI	GACNNNNNGTC	1 cut(s)	270
AluBI	AGCT	4 cut(s)	80, 185, 193, 226
AluI	AGCT	4 cut(s)	80, 185, 193, 226
Alw26I	GTCTC	1 cut(s)	203
AlwNI	CAGNNNCTG	2 cut(s)	80, 226
ApeKI	GCWGC	6 cut(s)	41, 71, 74, 77, 80, 193
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	340
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BbvI	GCAGC	6 cut(s)	28, 67, 83, 86, 89, 180
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	8 cut(s)	39, 42, 72, 75, 78, 81, 194, 346
BlsI	GCNGC	8 cut(s)	40, 43, 73, 76, 79, 82, 195, 347
BmeRI	GACNNNNNGTC	1 cut(s)	270
BmsI	GCATC	2 cut(s)	53, 267
BpuEI	CTTGAG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	98
BseGI	GGATG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	281, 302
BseRI	GAGGAG	2 cut(s)	40, 346
BseXI	GCAGC	6 cut(s)	28, 67, 83, 86, 89, 180
Bsh1236I	CGCG	2 cut(s)	13, 52
Bsh1285I	CGRYCG	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	318
Bsp143I	GATC	4 cut(s)	53, 214, 335, 398
BspACI	CCGC	2 cut(s)	38, 346
BspCNI	CTCAG	2 cut(s)	280, 301
BspFNI	CGCG	2 cut(s)	13, 52
BssMI	GATC	4 cut(s)	53, 214, 335, 398
BssNI	GRCGYC	1 cut(s)	98
Bst6I	CTCTTC	2 cut(s)	111, 407
BstACI	GRCGYC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	267, 288
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	2 cut(s)	13, 52
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	4 cut(s)	56, 217, 338, 401
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	4 cut(s)	53, 214, 335, 398
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 77, 80, 277
BstNSI	RCATGY	3 cut(s)	259, 298, 359
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	2 cut(s)	13, 52
BstV1I	GCAGC	6 cut(s)	28, 67, 83, 86, 89, 180
BtsCI	GGATG	1 cut(s)	217
CaiI	CAGNNNCTG	2 cut(s)	80, 226
CfoI	GCGC	1 cut(s)	52
CseI	GACGC	3 cut(s)	106, 185, 260
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	4 cut(s)	207, 256, 295, 356
CviJI	RGCY	8 cut(s)	41, 80, 141, 185, 193, 226, 287, 404
CviKI_1	RGCY	8 cut(s)	41, 80, 141, 185, 193, 226, 287, 404
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	267, 288
DpnI	GATC	4 cut(s)	55, 216, 337, 400
DpnII	GATC	4 cut(s)	53, 214, 335, 398
DriI	GACNNNNNGTC	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	111, 407
Eam1105I	GACNNNNNGTC	1 cut(s)	270
EarI	CTCTTC	2 cut(s)	111, 407
Eco57I	CTGAAG	3 cut(s)	171, 203, 266
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	4 cut(s)	210, 259, 298, 359
FaiI	YATR	6 cut(s)	168, 208, 257, 296, 357, 431
FatI	CATG	4 cut(s)	206, 255, 294, 355
Fnu4HI	GCNGC	8 cut(s)	39, 42, 72, 75, 78, 81, 194, 346
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	8 cut(s)	39, 42, 72, 75, 78, 81, 194, 346
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	8 cut(s)	39, 42, 72, 75, 78, 81, 194, 346
HgaI	GACGC	3 cut(s)	106, 185, 260
HhaI	GCGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	4 cut(s)	210, 259, 298, 359
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	5 cut(s)	30, 59, 91, 265, 389
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	6 cut(s)	58, 96, 190, 222, 276, 291
Hpy188III	TCNNGA	2 cut(s)	22, 393
Hpy8I	GTNNAC	1 cut(s)	63
Hpy99I	CGWCG	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	44, 298
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 77, 80, 277
HpyF3I	CTNAG	2 cut(s)	267, 288
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	4 cut(s)	210, 259, 298, 359
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	4 cut(s)	53, 214, 335, 398
LpnPI	CCDG	4 cut(s)	171, 269, 324, 399
Lsp1109I	GCAGC	6 cut(s)	28, 67, 83, 86, 89, 180
LweI	GCATC	2 cut(s)	53, 267
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	234
MalI	GATC	4 cut(s)	55, 216, 337, 400
MboI	GATC	4 cut(s)	53, 214, 335, 398
MboII	GAAGA	7 cut(s)	128, 161, 209, 230, 392, 408, 424
MlyI	GAGTC	2 cut(s)	68, 259
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	4 cut(s)	18, 94, 167, 324
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	318
MvnI	CGCG	2 cut(s)	13, 52
MwoI	GCNNNNNNNGC	4 cut(s)	47, 77, 80, 277
NdeII	GATC	4 cut(s)	53, 214, 335, 398
NlaIII	CATG	4 cut(s)	210, 259, 298, 359
NmeAIII	GCCGAG	1 cut(s)	430
NspI	RCATGY	3 cut(s)	259, 298, 359
PciI	ACATGT	1 cut(s)	255
PctI	GAATGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	3 cut(s)	30, 91, 389
PkrI	GCNGC	8 cut(s)	40, 43, 73, 76, 79, 82, 195, 347
Ple19I	CGATCG	1 cut(s)	56
PleI	GAGTC	2 cut(s)	67, 259
PpsI	GAGTC	2 cut(s)	67, 259
PscI	ACATGT	1 cut(s)	255
PstNI	CAGNNNCTG	2 cut(s)	80, 226
PvuI	CGATCG	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	8 cut(s)	39, 42, 72, 75, 78, 81, 194, 346
Sau3AI	GATC	4 cut(s)	53, 214, 335, 398
SchI	GAGTC	2 cut(s)	68, 259
SetI	ASST	8 cut(s)	82, 160, 178, 187, 195, 228, 237, 330
SfaNI	GCATC	2 cut(s)	53, 267
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SsiI	CCGC	2 cut(s)	38, 346
SspMI	CTAG	1 cut(s)	393
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	4 cut(s)	86, 114, 132, 172
TaqII	GACCGA	1 cut(s)	380
TauI	GCSGC	2 cut(s)	41, 348
TfiI	GAWTC	3 cut(s)	30, 91, 389
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseI	GCWGC	6 cut(s)	41, 71, 74, 77, 80, 193
TspDTI	ATGAA	1 cut(s)	425
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	3 cut(s)	259, 298, 359
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.