Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Forward (+)

65471942 .. 65473977

Gene Structure 2036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATGATGGTGGCAAGGTATTTCAGGCGAACACTGTTTGCTGCAGCCAAATCAGAATCTCCTGGTGCTGCTTCTATGGCTAGGACGACGGCCCACAACCCGCTCGAGGAGTTCTTTGAAGCGGATAGGAAGGCTGATGAAGAAAAGCCAGTTGTATATGGTCGAAGTTGGAAGGCATCTGAACTGCGTTTGAAGTCTTGGGATGATCTCAATAAGCTATGGTTTGTTCTGCTTAAAGAGAAAAACATGCTGATGACTCAACGTCAGATGCTTCACGCACAGAATCTTCGTTTTCCTAATCCTGAGCGCCTTCCCAAAGTGAGGAAGTCAATGTGTCGTATCAAGCACGTACTCACTGATAGAGCAATTGAAGAACCTAATTCCAGGAGGTCTGCTGAGATGAAGAGGATGATAAATGCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

141

Amino Acids

16.63

Weight (kDa)

10.23

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRP-L47	PF06984	35 - 121	3.4e-34	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Ribosomal_L29	PF00831	60 - 121	4.7e-08	Ribosomal L29 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	103
AciI	CCGC	2 cut(s)	101, 122
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	2 cut(s)	106, 321
AgsI	TTSAA	3 cut(s)	119, 193, 371
AhdI	GACNNNNNGTC	1 cut(s)	261
AjnI	CCWGG	2 cut(s)	61, 383
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	41, 44, 68
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	28, 55, 56
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	2 cut(s)	63, 385
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	310
BisI	GCNGC	3 cut(s)	42, 45, 69
BlsI	GCNGC	3 cut(s)	43, 46, 70
Bme1390I	CCNGG	2 cut(s)	63, 385
BmeRI	GACNNNNNGTC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	91
BmrFI	CCNGG	2 cut(s)	63, 385
BmsI	GCATC	2 cut(s)	185, 258
Bpu10I	CCTNAGC	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 321
Bse1I	ACTGG	1 cut(s)	149
BseBI	CCWGG	2 cut(s)	63, 385
BseGI	GGATG	2 cut(s)	208, 414
BseLI	CCNNNNNNNGG	2 cut(s)	106, 321
BseMII	CTCAG	2 cut(s)	294, 387
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	28, 55, 56
BshFI	GGCC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	106, 321
BsnI	GGCC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	2 cut(s)	101, 122
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	295, 388
BspMAI	CTGCAG	1 cut(s)	46
BsrBI	CCGCTC	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	205
Bst2UI	CCWGG	2 cut(s)	63, 385
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	303, 396
BstF5I	GGATG	2 cut(s)	208, 414
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	2 cut(s)	63, 385
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	61, 383
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	28, 55, 56
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	208, 414
BtsIMutI	CAGTG	2 cut(s)	32, 354
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	6 cut(s)	47, 80, 92, 134, 148, 217
CviKI_1	RGCY	6 cut(s)	47, 80, 92, 134, 148, 217
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	2 cut(s)	303, 396
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DriI	GACNNNNNGTC	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	398
Eam1105I	GACNNNNNGTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	398
Eco88I	CYCGRG	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	61, 383
FaeI	CATG	1 cut(s)	250
FaiI	YATR	5 cut(s)	77, 157, 159, 220, 248
FatI	CATG	1 cut(s)	246
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	42, 45, 69
FokI	GGATG	2 cut(s)	215, 421
Fsp4HI	GCNGC	3 cut(s)	42, 45, 69
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	3 cut(s)	42, 45, 69
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	56, 256, 283
Hpy188I	TCNGA	3 cut(s)	55, 181, 267
Hpy188III	TCNNGA	1 cut(s)	302
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	3 cut(s)	124, 166, 320
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	2 cut(s)	262, 348
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	2 cut(s)	303, 396
HpySE526I	ACGT	2 cut(s)	262, 348
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	7 cut(s)	10, 48, 75, 162, 315, 370, 397
Lsp1109I	GCAGC	3 cut(s)	28, 55, 56
LweI	GCATC	2 cut(s)	185, 258
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	2 cut(s)	262, 348
MalI	GATC	1 cut(s)	207
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	1 cut(s)	205
MboII	GAAGA	4 cut(s)	152, 278, 383, 415
MfeI	CAATTG	1 cut(s)	366
MluCI	AATT	2 cut(s)	366, 379
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	4 cut(s)	100, 315, 381, 399
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	63, 385
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	2 cut(s)	63, 385
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	250
NspI	RCATGY	1 cut(s)	250
PaeR7I	CTCGAG	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	56, 283
PfoI	TCCNGGA	1 cut(s)	383
PkrI	GCNGC	3 cut(s)	43, 46, 70
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	61, 383
PspGI	CCWGG	2 cut(s)	61, 383
PspPI	GGNCC	1 cut(s)	91
PspXI	VCTCGAGB	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	3 cut(s)	42, 45, 69
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	63, 385
SetI	ASST	6 cut(s)	20, 219, 265, 351, 379, 392
SfaNI	GCATC	2 cut(s)	185, 258
SfcI	CTRYAG	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	366, 379
SsiI	CCGC	2 cut(s)	101, 122
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	61, 383
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	2 cut(s)	265, 351
TaqI	TCGA	2 cut(s)	105, 163
TasI	AATT	2 cut(s)	366, 379
TfiI	GAWTC	2 cut(s)	56, 283
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	2 cut(s)	39, 361
TseI	GCWGC	3 cut(s)	41, 44, 68
TspDTI	ATGAA	2 cut(s)	153, 416
TspRI	CASTG	2 cut(s)	39, 361
XceI	RCATGY	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	104
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.