Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Reverse (-)

48594414 .. 48614741

Gene Structure 20328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG353900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAGAAATGAAGATTTACAAGCAGCGGCAGGGAAGGTTACAATGATGATGGTGTCAAGGTATTTCAGGCGAACATTGTTTGCTACAGCCAAATCAGAACCTTCTGGTGCTGCTTCTATGGCTAAGATGACGGCTCACAACCCACTTGAGGAATTCTTTGAAGCAGATTTGGATCCTCCCATGACGTGCCGGACCCGATTTGTTATCTCAAGCAATCCAGAAATAGCTGGTATTGTCCCAGAACCAGACATTGACACTTATATGAAGATCGCTGACGCCAGATTCGCTTCCTCCCCCGGCTCCGTTGTCTTCTTCGTCGTCGTGGGTGGCTCCGCTAAAACCCCCAGAACTCGGACTCCGCTTGGATTTCCAAAGCCAAAGCCGACGACGACGACGCTTCCGCATTCATCATCATCACAATTCGATATAATTTCCACTACCGGTGAGTATAATTTTAAATTTTCTCGGGAAACAAATGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

161

Amino Acids

17.61

Weight (kDa)

8.79

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	26, 333, 359, 401
AclWI	GGATC	2 cut(s)	167, 180
AcsI	RAATTY	2 cut(s)	152, 458
AcyI	GRCGYC	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	148, 351
AgeI	ACCGGT	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	161
AjiI	CACGTC	1 cut(s)	186
AloI	GAACNNNNNNTCC	2 cut(s)	340, 372
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AlwI	GGATC	2 cut(s)	167, 180
Ama87I	CYCGRG	1 cut(s)	465
ApeKI	GCWGC	2 cut(s)	23, 110
ApoI	RAATTY	2 cut(s)	152, 458
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
AsiGI	ACCGGT	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	192
BamHI	GGATCC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	35, 97
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	3 cut(s)	24, 27, 111
BlsI	GCNGC	3 cut(s)	25, 28, 112
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	465
BmgBI	CACGTC	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	4 cut(s)	174, 194, 301, 331
BmrFI	CCNGG	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	301
BpuEI	CTTGAG	2 cut(s)	167, 193
BpuMI	CCSGG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	295
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 351
Bse118I	RCCGGY	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	295
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	148, 351
BseXI	GCAGC	2 cut(s)	35, 97
BshTI	ACCGGT	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	3 cut(s)	190, 297, 441
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	148, 351
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	403
BsoBI	CYCGRG	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	172, 267
BspACI	CCGC	4 cut(s)	26, 333, 359, 401
BspLI	GGNNCC	4 cut(s)	174, 194, 301, 331
BspPI	GGATC	2 cut(s)	167, 180
BsrFI	RCCGGY	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	2 cut(s)	172, 267
BssNI	GRCGYC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	123
BstKTI	GATC	2 cut(s)	175, 270
BstMBI	GATC	2 cut(s)	172, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 284
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	35, 97
BstV2I	GAAGAC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	192
CseI	GACGC	2 cut(s)	284, 403
CspAI	ACCGGT	1 cut(s)	440
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	8 cut(s)	89, 122, 134, 227, 300, 330, 376, 382
CviKI_1	RGCY	8 cut(s)	89, 122, 134, 227, 300, 330, 376, 382
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	174, 269
DpnII	GATC	2 cut(s)	172, 267
DraI	TTTAAA	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	152
FaeI	CATG	1 cut(s)	184
FaiI	YATR	7 cut(s)	119, 182, 261, 263, 428, 450, 484
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	24, 27, 111
Fsp4HI	GCNGC	3 cut(s)	24, 27, 111
GluI	GCNGC	3 cut(s)	24, 27, 111
HapII	CCGG	3 cut(s)	190, 297, 441
HgaI	GACGC	2 cut(s)	284, 403
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	1 cut(s)	184
HinfI	GANTC	2 cut(s)	282, 355
HpaII	CCGG	3 cut(s)	190, 297, 441
HphI	GGTGA	1 cut(s)	455
Hpy188I	TCNGA	2 cut(s)	97, 354
Hpy188III	TCNNGA	2 cut(s)	218, 467
Hpy99I	CGWCG	6 cut(s)	320, 323, 388, 391, 394, 397
HpyAV	CCTTC	2 cut(s)	28, 111
HpyCH4IV	ACGT	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 284
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	185
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	172, 267
LmnI	GCTCC	2 cut(s)	305, 335
Lsp1109I	GCAGC	2 cut(s)	35, 97
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	174, 269
MboI	GATC	2 cut(s)	172, 267
MboII	GAAGA	4 cut(s)	23, 277, 301, 304
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	5 cut(s)	152, 419, 429, 451, 458
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	3 cut(s)	142, 186, 301
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	3 cut(s)	190, 297, 441
MspR9I	CCNGG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	403
MwoI	GCNNNNNNNGC	2 cut(s)	119, 284
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	2 cut(s)	172, 267
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	4 cut(s)	174, 194, 301, 331
PctI	GAATGC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	282
PinAI	ACCGGT	1 cut(s)	440
PkrI	GCNGC	3 cut(s)	25, 28, 112
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PspN4I	GGNNCC	4 cut(s)	174, 194, 301, 331
PspPI	GGNCC	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	3 cut(s)	24, 27, 111
Sau3AI	GATC	2 cut(s)	172, 267
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	5 cut(s)	39, 62, 103, 188, 229
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	146, 208
SmoI	CTYRAG	2 cut(s)	146, 208
Sse9I	AATT	5 cut(s)	152, 419, 429, 451, 458
SsiI	CCGC	4 cut(s)	26, 333, 359, 401
StyD4I	CCNGG	1 cut(s)	295
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	423
TasI	AATT	5 cut(s)	152, 419, 429, 451, 458
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TseI	GCWGC	2 cut(s)	23, 110
TspDTI	ATGAA	3 cut(s)	24, 278, 396
TspGWI	ACGGA	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	2 cut(s)	152, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.