Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Reverse (-)

1821064 .. 1823418

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG025700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGATGATGGTGACAAGGTATTTCAGGCGAACACTGTTTGCTGCAGCCAAATCAGAATCTTCTGGTGCTGCTTCTATGGCTAGGACGACGGCCCACAACCCGCTCGAGGAGTTCTTTGAAGCAGATAGGAAGGCTGATGAAGAAAAGCCAGTTGTATATGGTCGAAGTTGGAAGGCTCAGGAACTGCGCCTGAAGTCTTGGGATGATCTCAATAAGCTATGGTTTGTTCTGCTTAAAGAGAAAAACATGCTGATGACTCAACGTCAGATGCTTCACGCACAGAATCTTCGTTTTCCTAATCCTGAGCGCCTTCCCAAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

107

Amino Acids

12.66

Weight (kDa)

9.91

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRP-L47	PF06984	35 - 107	9.7e-27	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	103
AciI	CCGC	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	1 cut(s)	119
AhdI	GACNNNNNGTC	1 cut(s)	261
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	41, 44, 68
AspLEI	GCGC	2 cut(s)	189, 309
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	28, 55, 56
BceAI	ACGGC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	310
BisI	GCNGC	3 cut(s)	42, 45, 69
BlsI	GCNGC	3 cut(s)	43, 46, 70
BmeRI	GACNNNNNGTC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	91
BmsI	GCATC	1 cut(s)	258
Bpu10I	CCTNAGC	2 cut(s)	177, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	2 cut(s)	191, 294
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	28, 55, 56
BshFI	GGCC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	106
BsnI	GGCC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	190, 295
BspMAI	CTGCAG	1 cut(s)	46
BsrBI	CCGCTC	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	177, 303
BstF5I	GGATG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	2 cut(s)	189, 309
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	28, 55, 56
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	32
CaiI	CAGNNNCTG	1 cut(s)	184
CfoI	GCGC	2 cut(s)	189, 309
Cfr13I	GGNCC	1 cut(s)	91
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	7 cut(s)	47, 80, 92, 134, 148, 176, 217
CviKI_1	RGCY	7 cut(s)	47, 80, 92, 134, 148, 176, 217
DdeI	CTNAG	2 cut(s)	177, 303
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DriI	GACNNNNNGTC	1 cut(s)	261
Eam1105I	GACNNNNNGTC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	104
FaeI	CATG	1 cut(s)	250
FaiI	YATR	6 cut(s)	77, 157, 159, 220, 248, 322
FatI	CATG	1 cut(s)	246
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	42, 45, 69
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	42, 45, 69
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	2 cut(s)	188, 308
GluI	GCNGC	3 cut(s)	42, 45, 69
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	92
HhaI	GCGC	2 cut(s)	189, 309
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	2 cut(s)	187, 307
HinP1I	GCGC	2 cut(s)	187, 307
HinfI	GANTC	3 cut(s)	56, 256, 283
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	55, 267
Hpy188III	TCNNGA	2 cut(s)	179, 302
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	3 cut(s)	124, 166, 320
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	2 cut(s)	177, 303
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	2 cut(s)	187, 307
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	6 cut(s)	10, 48, 162, 164, 203, 315
Lsp1109I	GCAGC	3 cut(s)	28, 55, 56
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	207
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	1 cut(s)	205
MboII	GAAGA	3 cut(s)	51, 152, 278
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	1 cut(s)	100
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	250
PaeR7I	CTCGAG	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	56, 283
PkrI	GCNGC	3 cut(s)	43, 46, 70
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	91
PspXI	VCTCGAGB	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	3 cut(s)	42, 45, 69
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	250
SetI	ASST	3 cut(s)	20, 219, 265
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	2 cut(s)	105, 163
TfiI	GAWTC	2 cut(s)	56, 283
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	41, 44, 68
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	39
XceI	RCATGY	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	104
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.