Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Reverse (-)

15010947 .. 15013340

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G177600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTTGATGGTGTCAAGGTATTTTAGGAGAACACTCTTTTCTGCAGCTAAATCAGAAACTTCTGCTGCGGCTGCTTCAGCTAGGACGACGGGACATAACCCTCTTGAGGAGTTCTTTGAGGCAGATAGAAGCCAAGATGAAGAAAAGCCAGTTGTCTACGGTCGAAGTTGGAAAGCATCTGAACTGCGCCTGAAGTCTTGGGATGATCTCAATAAGCTATGGTTTGTTCTGCTTAAGGAGAAAAACATGCTGATGACTCAACGCCAGATGCTTCAGGCCCAGAATCTACGGTTTCCTAATCCTGAGCGCCTTCCCAAAGTGAGGAAGTCAATGTGCCGTATCAAGCATGTTCTGACTGAGAGAGCAATTGAAGAACCTGATCCCAGGAGGTGTGCTGAGATGAAGAAAATGATAAATGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

142

Amino Acids

16.6

Weight (kDa)

9.89

Isoelectric Point (pI)

53.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	374
AcuI	CTGAAG	3 cut(s)	60, 212, 257
AfiI	CCNNNNNNNGG	2 cut(s)	106, 321
AflII	CTTAAG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	3 cut(s)	47, 80, 217
AluI	AGCT	3 cut(s)	47, 80, 217
AlwI	GGATC	1 cut(s)	374
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	3 cut(s)	44, 65, 71
AspLEI	GCGC	2 cut(s)	189, 309
AspS9I	GGNCC	1 cut(s)	277
BbvI	GCAGC	3 cut(s)	52, 56, 58
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	385
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	310
BfrI	CTTAAG	1 cut(s)	233
BisI	GCNGC	4 cut(s)	45, 66, 69, 72
BlsI	GCNGC	4 cut(s)	46, 67, 70, 73
Bme1390I	CCNGG	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	385
BmsI	GCATC	2 cut(s)	185, 258
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 321
Bse1I	ACTGG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	106, 321
BseMII	CTCAG	3 cut(s)	294, 348, 387
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	52, 56, 58
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	106, 321
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	205, 379
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	3 cut(s)	295, 349, 388
BspMAI	CTGCAG	1 cut(s)	46
BspPI	GGATC	1 cut(s)	374
BspTI	CTTAAG	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	2 cut(s)	205, 379
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	2 cut(s)	161, 291
BstAFI	CTTAAG	1 cut(s)	233
BstDEI	CTNAG	3 cut(s)	303, 357, 396
BstF5I	GGATG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	2 cut(s)	189, 309
BstKTI	GATC	2 cut(s)	208, 382
BstMBI	GATC	2 cut(s)	205, 379
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 77
BstNI	CCWGG	1 cut(s)	385
BstNSI	RCATGY	2 cut(s)	250, 350
BstSCI	CCNGG	1 cut(s)	383
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	52, 56, 58
BsuRI	GGCC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	208
CfoI	GCGC	2 cut(s)	189, 309
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	2 cut(s)	247, 347
CviJI	RGCY	7 cut(s)	47, 71, 80, 132, 148, 217, 278
CviKI_1	RGCY	7 cut(s)	47, 71, 80, 132, 148, 217, 278
DdeI	CTNAG	3 cut(s)	303, 357, 396
DpnI	GATC	2 cut(s)	207, 381
DpnII	GATC	2 cut(s)	205, 379
Eco57I	CTGAAG	3 cut(s)	60, 212, 257
EcoRII	CCWGG	1 cut(s)	383
FaeI	CATG	2 cut(s)	250, 350
FaiI	YATR	4 cut(s)	96, 220, 248, 348
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	246, 346
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	45, 66, 69, 72
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	4 cut(s)	45, 66, 69, 72
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	2 cut(s)	188, 308
GluI	GCNGC	4 cut(s)	45, 66, 69, 72
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	278
HhaI	GCGC	2 cut(s)	189, 309
Hin1II	CATG	2 cut(s)	250, 350
Hin6I	GCGC	2 cut(s)	187, 307
HinP1I	GCGC	2 cut(s)	187, 307
HinfI	GANTC	2 cut(s)	256, 283
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	3 cut(s)	55, 181, 354
Hpy188III	TCNNGA	2 cut(s)	104, 302
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	161, 291
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 77
HpyF3I	CTNAG	3 cut(s)	303, 357, 396
Hsp92II	CATG	2 cut(s)	250, 350
HspAI	GCGC	2 cut(s)	187, 307
Kzo9I	GATC	2 cut(s)	205, 379
LpnPI	CCDG	9 cut(s)	162, 203, 260, 278, 293, 315, 370, 390, 397
Lsp1109I	GCAGC	3 cut(s)	52, 56, 58
LweI	GCATC	2 cut(s)	185, 258
MaeI	CTAG	1 cut(s)	81
MalI	GATC	2 cut(s)	207, 381
MboI	GATC	2 cut(s)	205, 379
MboII	GAAGA	3 cut(s)	152, 383, 415
MfeI	CAATTG	1 cut(s)	366
MluCI	AATT	1 cut(s)	366
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	5 cut(s)	100, 111, 112, 315, 381
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	251
MspCI	CTTAAG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	2 cut(s)	71, 77
NdeII	GATC	2 cut(s)	205, 379
NlaIII	CATG	2 cut(s)	250, 350
NspI	RCATGY	2 cut(s)	250, 350
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	4 cut(s)	46, 67, 70, 73
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	4 cut(s)	45, 66, 69, 72
Sau3AI	GATC	2 cut(s)	205, 379
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	385
SetI	ASST	6 cut(s)	20, 49, 82, 219, 379, 392
SfaNI	GCATC	2 cut(s)	185, 258
SfcI	CTRYAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	104, 233
SmoI	CTYRAG	2 cut(s)	104, 233
Sse9I	AATT	1 cut(s)	366
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	161, 291
TaqI	TCGA	1 cut(s)	163
TasI	AATT	1 cut(s)	366
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseI	GCWGC	3 cut(s)	44, 65, 71
TspDTI	ATGAA	2 cut(s)	153, 416
Vha464I	CTTAAG	1 cut(s)	233
XceI	RCATGY	2 cut(s)	250, 350
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.