Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Forward (+)

66951795 .. 66953838

Gene Structure 2044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCTCGTTGGGCCTTCCTTAACTTGTTATACTATTTACATTGGGCCTTCTCTGCAATCGCCGCCGTTCAGCTCCAGACGTAAGATTACAATGATGATGGTGACAAGGTATTTCAGGCGAACACTGTTTGCTTCAGCCAAATCAGAATCTTCTGGTGCTGCTTCTATGGCTAGGACGACGGCCCACAACCCACTCGAGGAGTTCTTTGAAGCAGATAGGAAGGCTGATGAAGAAAAGCCAGTTGTATATGGTCGAAGTTGGAAGGCATCTGAACTGCGTCTGAAGTCTTGGGATGATCTCAATAAGCTATGGTTTGTTCTGCTTAAAGAGAAAAACATGCTGATGACTCAACGTCAGATGCTTCATGCACAGAATCTTCGTTTTCCTAATCCTGAGCGCCTTCCCAAAGTGAGGAAGTCAATGTGTCGTATCAAGCACGTACTCACTGAGAGAGCAATTGAAGAACCTGATTCCAGGAGGTCTGCTGAGATGAAGAGGATGATAAATGCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

172

Amino Acids

19.97

Weight (kDa)

10.14

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRP-L47	PF06984	65 - 151	1.6e-34	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Ribosomal_L29	PF00831	90 - 151	8.7e-09	Ribosomal L29 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AcuI	CTGAAG	2 cut(s)	117, 302
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	2 cut(s)	196, 411
AgsI	TTSAA	2 cut(s)	209, 461
AhdI	GACNNNNNGTC	1 cut(s)	351
AjnI	CCWGG	1 cut(s)	473
AluBI	AGCT	2 cut(s)	72, 307
AluI	AGCT	2 cut(s)	72, 307
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	11, 44, 180
ApeKI	GCWGC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	3 cut(s)	11, 44, 181
AsuHPI	GGTGA	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	2 cut(s)	49, 195
BciT130I	CCWGG	1 cut(s)	475
BfaI	CTAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	400
BisI	GCNGC	2 cut(s)	62, 159
BlsI	GCNGC	2 cut(s)	63, 160
Bme1390I	CCNGG	1 cut(s)	475
BmeRI	GACNNNNNGTC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	3 cut(s)	11, 44, 181
BmrFI	CCNGG	1 cut(s)	475
BmsI	GCATC	2 cut(s)	275, 348
BpmI	CTGGAG	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 411
Bse1I	ACTGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	475
BseGI	GGATG	2 cut(s)	298, 504
BseLI	CCNNNNNNNGG	2 cut(s)	196, 411
BseMII	CTCAG	3 cut(s)	384, 438, 477
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	3 cut(s)	13, 46, 182
BsiHKCI	CYCGRG	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	196, 411
BsnI	GGCC	3 cut(s)	13, 46, 182
BsoBI	CYCGRG	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	3 cut(s)	13, 46, 182
BspCNI	CTCAG	3 cut(s)	385, 439, 478
BsrI	ACTGG	1 cut(s)	239
BssMI	GATC	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	439
BstDEI	CTNAG	3 cut(s)	393, 447, 486
BstF5I	GGATG	2 cut(s)	298, 504
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 52, 61, 167
BstNI	CCWGG	1 cut(s)	475
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	473
BstV1I	GCAGC	1 cut(s)	145
BsuRI	GGCC	3 cut(s)	13, 46, 182
BtsCI	GGATG	2 cut(s)	298, 504
BtsIMutI	CAGTG	2 cut(s)	122, 444
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	3 cut(s)	11, 44, 181
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	2 cut(s)	337, 365
CviJI	RGCY	9 cut(s)	13, 46, 72, 137, 170, 182, 224, 238, 307
CviKI_1	RGCY	9 cut(s)	13, 46, 72, 137, 170, 182, 224, 238, 307
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	3 cut(s)	393, 447, 486
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DriI	GACNNNNNGTC	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	488
Eam1105I	GACNNNNNGTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	488
Eco57I	CTGAAG	2 cut(s)	117, 302
Eco88I	CYCGRG	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	473
FaeI	CATG	2 cut(s)	340, 368
FaiI	YATR	7 cut(s)	30, 167, 247, 249, 310, 338, 366
FatI	CATG	2 cut(s)	336, 364
Fnu4HI	GCNGC	2 cut(s)	62, 159
FokI	GGATG	2 cut(s)	305, 511
Fsp4HI	GCNGC	2 cut(s)	62, 159
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	2 cut(s)	62, 159
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	3 cut(s)	13, 46, 182
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	340, 368
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	4 cut(s)	146, 346, 373, 470
HphI	GGTGA	1 cut(s)	112
Hpy188I	TCNGA	4 cut(s)	145, 271, 282, 357
Hpy188III	TCNNGA	2 cut(s)	75, 392
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	5 cut(s)	24, 57, 214, 256, 410
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	3 cut(s)	79, 352, 438
HpyCH4V	TGCA	2 cut(s)	55, 368
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 52, 61, 167
HpyF3I	CTNAG	3 cut(s)	393, 447, 486
HpySE526I	ACGT	3 cut(s)	79, 352, 438
Hsp92II	CATG	2 cut(s)	340, 368
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	8 cut(s)	88, 100, 138, 252, 405, 460, 480, 487
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	2 cut(s)	275, 348
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	3 cut(s)	79, 352, 438
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	5 cut(s)	141, 242, 368, 473, 505
MfeI	CAATTG	1 cut(s)	456
MluCI	AATT	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	4 cut(s)	190, 405, 471, 489
MseI	TTAA	2 cut(s)	20, 324
MslI	CAYNNNNRTG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	475
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	475
MwoI	GCNNNNNNNGC	4 cut(s)	10, 52, 61, 167
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	2 cut(s)	340, 368
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	194
PfeI	GAWTC	3 cut(s)	146, 373, 470
PfoI	TCCNGGA	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	63, 160
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Ppu21I	YACGTR	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	473
PspPI	GGNCC	3 cut(s)	11, 44, 181
PspXI	VCTCGAGB	1 cut(s)	194
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	20, 324
SatI	GCNGC	2 cut(s)	62, 159
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	3 cut(s)	11, 44, 181
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	475
SetI	ASST	8 cut(s)	74, 82, 110, 309, 355, 441, 469, 482
SfaNI	GCATC	2 cut(s)	275, 348
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	456
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	473
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	3 cut(s)	82, 355, 441
TaqI	TCGA	2 cut(s)	195, 253
TasI	AATT	1 cut(s)	456
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	3 cut(s)	146, 373, 470
Tru1I	TTAA	2 cut(s)	20, 324
Tru9I	TTAA	2 cut(s)	20, 324
TscAI	CASTG	2 cut(s)	129, 451
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	243, 353, 506
TspRI	CASTG	2 cut(s)	129, 451
XceI	RCATGY	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.