Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Reverse (-)

29414488 .. 29415980

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATGATGGTGGCAAGGTATTTCAGGAGAACACTGTTTGCTGCAGCCAAATCAGAAGGTTCTGGTGCTGCTTCTATGGCTAGGACGACGGCCCACAACCCGCTTGAGGAGTTCTTTGAAGCAGATAGAAGCCTGATGAAGAAAAGCCAGTTGTATATGGTACAATGCTTTTCGTTTCCTTGTCGAAGTTGGAAGGCATCTGAACTGCGTCGGAAGTCTTGGGATGATCTCAATAAGCTATGGTTTGTTCTGCTTAAAGAGAAAAACATGCTGATGACTCAACGTCAGATGCTTAACGCACAGAATCTTCGTTTTCCTAATCCTGAGCACCTTCCCAAAGTGAGGAAGTCAATGTGTCGTATCAAGCACGTACTCACTGAGAGAGCAATTGAAGCACATCAGCAACCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

137

Amino Acids

16.14

Weight (kDa)

10.2

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRP-L47	PF06984	35 - 128	3.5e-30	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Ribosomal_L29	PF00831	67 - 128	2e-08	Ribosomal L29 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	101
AfaI	GTAC	2 cut(s)	162, 372
AfiI	CCNNNNNNNGG	2 cut(s)	106, 342
AgsI	TTSAA	2 cut(s)	119, 392
AhdI	GACNNNNNGTC	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	330
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	41, 44, 68
AspS9I	GGNCC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	28, 55, 56
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	408
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	3 cut(s)	42, 45, 69
BlsI	GCNGC	3 cut(s)	43, 46, 70
Bme1390I	CCNGG	1 cut(s)	408
BmeRI	GACNNNNNGTC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	2 cut(s)	206, 279
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 342
Bse1I	ACTGG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	106, 342
BseMII	CTCAG	2 cut(s)	315, 369
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	28, 55, 56
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	106, 342
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	316, 370
BspMAI	CTGCAG	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	36
BstBAI	YACGTR	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	324, 378
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 392
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	28, 55, 56
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	32, 375
Cfr13I	GGNCC	1 cut(s)	91
CseI	GACGC	1 cut(s)	197
CsiI	ACCWGGT	1 cut(s)	406
Csp6I	GTAC	2 cut(s)	161, 371
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	6 cut(s)	47, 80, 92, 132, 147, 238
CviKI_1	RGCY	6 cut(s)	47, 80, 92, 132, 147, 238
CviQI	GTAC	2 cut(s)	161, 371
DdeI	CTNAG	2 cut(s)	324, 378
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
DriI	GACNNNNNGTC	1 cut(s)	282
Eam1105I	GACNNNNNGTC	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	406
FaeI	CATG	1 cut(s)	271
FaiI	YATR	5 cut(s)	77, 156, 158, 241, 269
FatI	CATG	1 cut(s)	267
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	42, 45, 69
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	42, 45, 69
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	3 cut(s)	42, 45, 69
HaeIII	GGCC	1 cut(s)	92
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	271
HinfI	GANTC	2 cut(s)	277, 304
Hpy188I	TCNGA	4 cut(s)	55, 202, 213, 288
Hpy188III	TCNNGA	2 cut(s)	25, 323
Hpy99I	CGWCG	2 cut(s)	91, 213
HpyAV	CCTTC	3 cut(s)	50, 187, 341
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	2 cut(s)	283, 369
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 392
HpyF3I	CTNAG	2 cut(s)	324, 378
HpySE526I	ACGT	2 cut(s)	283, 369
Hsp92II	CATG	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	226
LpnPI	CCDG	6 cut(s)	10, 48, 146, 161, 336, 393
Lsp1109I	GCAGC	3 cut(s)	28, 55, 56
LweI	GCATC	2 cut(s)	206, 279
MabI	ACCWGGT	1 cut(s)	406
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	2 cut(s)	283, 369
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	151, 299
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	2 cut(s)	170, 191
MnlI	CCTC	2 cut(s)	100, 336
MseI	TTAA	2 cut(s)	255, 294
MslI	CAYNNNNRTG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	77, 392
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	271
NspI	RCATGY	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	43, 46, 70
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	46
RsaI	GTAC	2 cut(s)	162, 372
RsaNI	GTAC	2 cut(s)	161, 371
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	255, 294
SatI	GCNGC	3 cut(s)	42, 45, 69
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	7 cut(s)	20, 61, 240, 286, 333, 372, 409
SexAI	ACCWGGT	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	206, 279
SfcI	CTRYAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	387
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	2 cut(s)	286, 372
TaqI	TCGA	1 cut(s)	184
TasI	AATT	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	2 cut(s)	255, 294
Tru9I	TTAA	2 cut(s)	255, 294
TscAI	CASTG	2 cut(s)	39, 382
TseI	GCWGC	3 cut(s)	41, 44, 68
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	39, 382
XceI	RCATGY	1 cut(s)	271
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.