Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Forward (+)

9467191 .. 9469389

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g16620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATGATGCTGTCGAAGTATTTCCGGCGAACATTGTTTTCTGCAGCCAAATCTGAAGGTTCTGGTGCTGCTTCTATGGCTAGTACGACGGCCCATAACCCACTTCATGATCTGTTTGAAAAAGATAGGAAGCCTGATGATGAAAAGCCTGTATATGGTCGAAGTTGGAAGGCACCTGAACTGCGTTTGAAGTCTTGGGATGATCTCAATAAGCTATGGTTTGTTCTGCTTAAAGAGAGAAACATGCTGATGACTCAACGTCAGATGCTTCACGCACAAAATCTTCGTTTTCCTAATCCTGAGCGCCTTCCCAAAGTGCGGAAGTCAATGTGTCGTATCAAGCACGTACTCACTGAGAGAGCAATTGATGAACCTGATTCCAGGAGGTCTGCTGAGATGAAGAGGATGATAAATGCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

141

Amino Acids

16.5

Weight (kDa)

10.16

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRP-L47	PF06984	35 - 120	9.2e-33	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Ribosomal_L29	PF00831	60 - 120	3.4e-08	Ribosomal L29 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AciI	CCGC	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	85, 348
AfiI	CCNNNNNNNGG	2 cut(s)	155, 318
AgsI	TTSAA	2 cut(s)	119, 190
AhdI	GACNNNNNGTC	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	2 cut(s)	44, 68
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	55, 56
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	382
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	307
BisI	GCNGC	2 cut(s)	45, 69
BlsI	GCNGC	2 cut(s)	46, 70
Bme1390I	CCNGG	1 cut(s)	382
BmeRI	GACNNNNNGTC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	382
BmsI	GCATC	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	300
BsaAI	YACGTR	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 318
BseBI	CCWGG	1 cut(s)	382
BseGI	GGATG	2 cut(s)	205, 411
BseLI	CCNNNNNNNGG	2 cut(s)	155, 318
BseMII	CTCAG	3 cut(s)	291, 345, 384
BseXI	GCAGC	2 cut(s)	55, 56
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	155, 318
BsnI	GGCC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	109, 202
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	3 cut(s)	292, 346, 385
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	172
BssMI	GATC	2 cut(s)	109, 202
Bst2UI	CCWGG	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	395
BstBAI	YACGTR	1 cut(s)	346
BstDEI	CTNAG	3 cut(s)	300, 354, 393
BstF5I	GGATG	2 cut(s)	205, 411
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	2 cut(s)	112, 205
BstMBI	GATC	2 cut(s)	109, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	382
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	380
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	55, 56
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	205, 411
BtsIMutI	CAGTG	1 cut(s)	351
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	84, 347
CviAII	CATG	2 cut(s)	107, 244
CviJI	RGCY	6 cut(s)	47, 80, 92, 133, 148, 214
CviKI_1	RGCY	6 cut(s)	47, 80, 92, 133, 148, 214
CviQI	GTAC	2 cut(s)	84, 347
DdeI	CTNAG	3 cut(s)	300, 354, 393
DpnI	GATC	2 cut(s)	111, 204
DpnII	GATC	2 cut(s)	109, 202
DriI	GACNNNNNGTC	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	395
Eam1105I	GACNNNNNGTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	380
FaeI	CATG	2 cut(s)	110, 247
FaiI	YATR	7 cut(s)	77, 96, 108, 154, 156, 217, 245
FatI	CATG	2 cut(s)	106, 243
Fnu4HI	GCNGC	2 cut(s)	45, 69
FokI	GGATG	2 cut(s)	212, 418
Fsp4HI	GCNGC	2 cut(s)	45, 69
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	2 cut(s)	45, 69
HaeII	RGCGCY	1 cut(s)	307
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	110, 247
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	253, 377
HpaII	CCGG	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	55, 264
Hpy188III	TCNNGA	2 cut(s)	107, 299
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	3 cut(s)	50, 163, 317
HpyCH4IV	ACGT	2 cut(s)	259, 345
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	3 cut(s)	300, 354, 393
HpySE526I	ACGT	2 cut(s)	259, 345
Hsp92II	CATG	2 cut(s)	110, 247
HspAI	GCGC	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	109, 202
LpnPI	CCDG	9 cut(s)	38, 48, 147, 162, 189, 312, 367, 387, 394
Lsp1109I	GCAGC	2 cut(s)	55, 56
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	2 cut(s)	259, 345
MalI	GATC	2 cut(s)	111, 204
MboI	GATC	2 cut(s)	109, 202
MboII	GAAGA	2 cut(s)	275, 412
MfeI	CAATTG	1 cut(s)	363
MluCI	AATT	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	2 cut(s)	378, 396
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	248
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	382
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	2 cut(s)	109, 202
NlaIII	CATG	2 cut(s)	110, 247
NlaIV	GGNNCC	1 cut(s)	174
NspI	RCATGY	1 cut(s)	247
PagI	TCATGA	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	377
PfoI	TCCNGGA	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	46, 70
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	46
RsaI	GTAC	2 cut(s)	85, 348
RsaNI	GTAC	2 cut(s)	84, 347
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	45, 69
Sau3AI	GATC	2 cut(s)	109, 202
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	382
SetI	ASST	7 cut(s)	61, 178, 216, 262, 348, 376, 389
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	1 cut(s)	319
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	380
TaiI	ACGT	2 cut(s)	262, 348
TaqI	TCGA	2 cut(s)	14, 160
TasI	AATT	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	2 cut(s)	44, 68
TspDTI	ATGAA	4 cut(s)	95, 156, 384, 413
TspRI	CASTG	1 cut(s)	358
XceI	RCATGY	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.