Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Reverse (-)

31851219 .. 31853516

Gene Structure 2298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1178500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGACGGAGTACAACCCTCTTGAGGAGTTCTTTGAGAAAGATAGAAGCCAAGAGGAAGAAAAGCCAGTTGTCTACGGTCGAAGTTGGAAGGCAGATGAATTGCGTCTGAAGTCTTGGGATGATCTCAATAAGCTATGGTATGTTCTGCTTAAGGAGAAAAACATGCTGATGACTCAACGCCAGATGCTTCATGCGCAGAACCTCCGGTTTCCCAATCCTGAGCGCCTTCCCAAAGTGAGGAAGTCAATGTGCCGTATCAAGCACGTTCTCACTGAGAGAGCGATCGTAGAACCAGATCCCAGGAGGTCTGCTGAGATGAAGAGGATGATAAACGCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

114

Amino Acids

13.77

Weight (kDa)

9.48

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRP-L47	PF06984	7 - 93	1.4e-35	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Ribosomal_L29	PF00831	33 - 93	4.8e-09	Ribosomal L29 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	22, 237
AflII	CTTAAG	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	299
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
AlwI	GGATC	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	196, 225
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	301
BfoI	RGCGCY	1 cut(s)	226
BfrI	CTTAAG	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 237
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	2 cut(s)	124, 330
BseLI	CCNNNNNNNGG	2 cut(s)	22, 237
BseMII	CTCAG	3 cut(s)	210, 264, 303
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	38
Bsh1285I	CGRYCG	2 cut(s)	79, 285
BsiEI	CGRYCG	2 cut(s)	79, 285
BsiSI	CCGG	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	22, 237
Bsp143I	GATC	3 cut(s)	121, 282, 295
BspCNI	CTCAG	3 cut(s)	211, 265, 304
BspPI	GGATC	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	3 cut(s)	121, 282, 295
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	314
BstAFI	CTTAAG	1 cut(s)	149
BstDEI	CTNAG	3 cut(s)	219, 273, 312
BstF5I	GGATG	2 cut(s)	124, 330
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	196, 225
BstKTI	GATC	3 cut(s)	124, 285, 298
BstMBI	GATC	3 cut(s)	121, 282, 295
BstMCI	CGRYCG	2 cut(s)	79, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	299
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	124, 330
BtsIMutI	CAGTG	1 cut(s)	270
CfoI	GCGC	2 cut(s)	196, 225
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	2 cut(s)	163, 191
CviJI	RGCY	3 cut(s)	48, 64, 133
CviKI_1	RGCY	3 cut(s)	48, 64, 133
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	3 cut(s)	219, 273, 312
DpnI	GATC	3 cut(s)	123, 284, 297
DpnII	GATC	3 cut(s)	121, 282, 295
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	299
FaeI	CATG	2 cut(s)	166, 194
FaiI	YATR	4 cut(s)	136, 141, 164, 192
FatI	CATG	2 cut(s)	162, 190
FblI	GTMKAC	1 cut(s)	72
FokI	GGATG	2 cut(s)	131, 337
FspI	TGCGCA	1 cut(s)	195
GlaI	GCGC	2 cut(s)	195, 224
HaeII	RGCGCY	1 cut(s)	226
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	2 cut(s)	196, 225
Hin1II	CATG	2 cut(s)	166, 194
Hin6I	GCGC	2 cut(s)	194, 223
HinP1I	GCGC	2 cut(s)	194, 223
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	2 cut(s)	20, 218
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	82, 236
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	3 cut(s)	219, 273, 312
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	166, 194
HspAI	GCGC	2 cut(s)	194, 223
Kzo9I	GATC	3 cut(s)	121, 282, 295
LpnPI	CCDG	7 cut(s)	78, 194, 218, 231, 286, 306, 313
LweI	GCATC	1 cut(s)	174
MaeII	ACGT	1 cut(s)	264
MalI	GATC	3 cut(s)	123, 284, 297
MboI	GATC	3 cut(s)	121, 282, 295
MboII	GAAGA	2 cut(s)	68, 331
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	7 cut(s)	16, 27, 46, 212, 231, 297, 315
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	167
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	3 cut(s)	121, 282, 295
NlaIII	CATG	2 cut(s)	166, 194
NsbI	TGCGCA	1 cut(s)	195
NspI	RCATGY	1 cut(s)	166
Ple19I	CGATCG	1 cut(s)	285
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	295
PvuI	CGATCG	1 cut(s)	285
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	150
Sau3AI	GATC	3 cut(s)	121, 282, 295
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	301
SetI	ASST	4 cut(s)	135, 204, 267, 308
SfaNI	GCATC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	20, 149
SmoI	CTYRAG	2 cut(s)	20, 149
Sse9I	AATT	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	299
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	79
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	111, 179, 332
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	149
XceI	RCATGY	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.