Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Reverse (-)

50895144 .. 50901431

Gene Structure 6288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG345800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 307 bp

ATGAGAAATGAAGGTTTACAAGCGGCAGCATGGAAGGTTACAATGATGATGGTGTCAAGGTATTTCAGGCGAACATTGTTTGCTGCAGCCAAATCAGAACCTTCTGGTGCTGCTTCTATGGCTAAGATGACGGCTCACAACCCACTTGAGGAGTTCTTTGAAGCAGATTTGGATCCCCCGATGATGTGCCGGACCCAATTTGTTATCTCAAGCAACCCAGAAATAGCTGGTTTTATCGCCAAGGGCCGCTGCTCTGTCTACACTCTTCTCTTCTTCATAATCAGCAGATCCAGAGCCTCTTTCTCAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

102

Amino Acids

11.43

Weight (kDa)

9.51

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	2 cut(s)	23, 247
AclWI	GGATC	3 cut(s)	167, 180, 282
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	161
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AlwI	GGATC	3 cut(s)	167, 180, 282
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	5 cut(s)	26, 83, 86, 110, 249
AspS9I	GGNCC	2 cut(s)	192, 244
AvaII	GGWCC	1 cut(s)	192
BamHI	GGATCC	1 cut(s)	172
BbvI	GCAGC	5 cut(s)	38, 70, 97, 98, 236
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	7 cut(s)	24, 27, 84, 87, 111, 247, 250
BlsI	GCNGC	7 cut(s)	25, 28, 85, 88, 112, 248, 251
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	192, 244
BmiI	GGNNCC	2 cut(s)	174, 194
BpuEI	CTTGAG	2 cut(s)	167, 193
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	5 cut(s)	38, 70, 97, 98, 236
BshFI	GGCC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	148
BsnI	GGCC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	172, 287
BspACI	CCGC	2 cut(s)	23, 247
BspANI	GGCC	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	174, 194
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	3 cut(s)	167, 180, 282
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	2 cut(s)	172, 287
BssT1I	CCWWGG	1 cut(s)	240
Bst6I	CTCTTC	2 cut(s)	270, 275
BstDEI	CTNAG	1 cut(s)	123
BstKTI	GATC	2 cut(s)	175, 290
BstMBI	GATC	2 cut(s)	172, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	5 cut(s)	38, 70, 97, 98, 236
BstX2I	RGATCY	2 cut(s)	172, 287
BstYI	RGATCY	2 cut(s)	172, 287
BsuRI	GGCC	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	192, 244
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	6 cut(s)	89, 122, 134, 227, 246, 296
CviKI_1	RGCY	6 cut(s)	89, 122, 134, 227, 246, 296
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	174, 289
DpnII	GATC	2 cut(s)	172, 287
Eam1104I	CTCTTC	2 cut(s)	270, 275
EarI	CTCTTC	2 cut(s)	270, 275
Eco130I	CCWWGG	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	33
FaiI	YATR	3 cut(s)	31, 119, 278
FatI	CATG	1 cut(s)	29
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	7 cut(s)	24, 27, 84, 87, 111, 247, 250
Fsp4HI	GCNGC	7 cut(s)	24, 27, 84, 87, 111, 247, 250
GluI	GCNGC	7 cut(s)	24, 27, 84, 87, 111, 247, 250
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	1 cut(s)	33
HpaII	CCGG	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	17, 259
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	291
Hpy8I	GTNNAC	2 cut(s)	17, 259
HpyAV	CCTTC	3 cut(s)	5, 28, 111
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	172, 287
LpnPI	CCDG	5 cut(s)	52, 90, 203, 213, 231
Lsp1109I	GCAGC	5 cut(s)	38, 70, 97, 98, 236
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	174, 289
MboI	GATC	2 cut(s)	172, 287
MboII	GAAGA	3 cut(s)	257, 262, 265
MflI	RGATCY	2 cut(s)	172, 287
MluCI	AATT	1 cut(s)	197
MnlI	CCTC	2 cut(s)	142, 307
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	2 cut(s)	172, 287
NlaIII	CATG	1 cut(s)	33
NlaIV	GGNNCC	2 cut(s)	174, 194
PkrI	GCNGC	7 cut(s)	25, 28, 85, 88, 112, 248, 251
PspN4I	GGNNCC	2 cut(s)	174, 194
PspPI	GGNCC	2 cut(s)	192, 244
PstI	CTGCAG	1 cut(s)	88
PsuI	RGATCY	2 cut(s)	172, 287
SatI	GCNGC	7 cut(s)	24, 27, 84, 87, 111, 247, 250
Sau3AI	GATC	2 cut(s)	172, 287
Sau96I	GGNCC	2 cut(s)	192, 244
SetI	ASST	5 cut(s)	16, 39, 62, 103, 229
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	146, 208
SmoI	CTYRAG	2 cut(s)	146, 208
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	2 cut(s)	23, 247
StyI	CCWWGG	1 cut(s)	240
TasI	AATT	1 cut(s)	197
TauI	GCSGC	2 cut(s)	26, 249
TseI	GCWGC	5 cut(s)	26, 83, 86, 110, 249
TspDTI	ATGAA	2 cut(s)	24, 265
VpaK11BI	GGWCC	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.