Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Reverse (-)

27725043 .. 27727256

Gene Structure 2214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1184900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGCCGCATATTGGCTCTCATATTAAACCCAATTACACGGAAAAGCCCAAACGACGAGAAAGCCTCTGAAATTGCCATAGCCAGAGTTCCCTTCAGTCTCGAGTCCTCAGCCTCCATCCACCAGACCCGAAATCAGGACCCCAAAAACGCCGCCGTCAACCTCCGCAAAAATCTGAGCACGATGATCCAGGTGGCAAGGTATTTCAAGAGAACACTCTTTTCTGCAGCTAAATCGGAAACTTCTGCTGCGGCTTCGGCGGCTAGGTCGACGGAGTACAACCCTCTTGAGGAGTTCTTTGAGAAAGATAGAAGCCAAGAGGAAGAAAAGCCAGTTGTCTACGGTCGAAGTTGGAAGGCAGCTGAATTGCGTCTGAAGTCTTGGGATGATCTCAATAAGTTATGGTATGTTCTGCTTAAGGAGAAAAACATGCTGATGACTCAACGCCAGATGCTTCATGCCCAGAATCTCCGGTTTCCCAATCCTGAGCGCCTTCCCAAAGTGAGGAAGTCAATGTGTCGTATCAAGCATGTTCTCACTGAGAGAGCAATCGAAGAACCAGATCCCAGGAGGTCTGCTGAGATGAAGAGGATGGTAAATTCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

203

Amino Acids

23.41

Weight (kDa)

10.03

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRP-L47	PF06984	96 - 182	7.6e-35	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Ribosomal_L29	PF00831	122 - 182	1.9e-08	Ribosomal L29 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	269, 339
AciI	CCGC	5 cut(s)	7, 153, 166, 251, 260
AclWI	GGATC	2 cut(s)	181, 557
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	2 cut(s)	79, 395
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	4 cut(s)	13, 136, 289, 504
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	189, 566
AluBI	AGCT	2 cut(s)	230, 362
AluI	AGCT	2 cut(s)	230, 362
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	181, 557
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	3 cut(s)	227, 248, 359
ApoI	RAATTY	1 cut(s)	598
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	4, 139
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	182
BbvCI	CCTCAGC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	235, 239, 371
BccI	CCATC	2 cut(s)	125, 586
BceAI	ACGGC	1 cut(s)	140
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BciT130I	CCWGG	2 cut(s)	191, 568
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	493
BfrI	CTTAAG	1 cut(s)	416
BisI	GCNGC	7 cut(s)	7, 153, 228, 249, 252, 261, 360
BlsI	GCNGC	7 cut(s)	8, 154, 229, 250, 253, 262, 361
Bme1390I	CCNGG	2 cut(s)	191, 568
Bme18I	GGWCC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	4, 139
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	191, 568
BmsI	GCATC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
Bpu10I	CCTNAGC	2 cut(s)	109, 486
BpuEI	CTTGAG	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	566
BsaWI	WCCGGW	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 136, 289, 504
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	191, 568
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	3 cut(s)	117, 391, 597
BseLI	CCNNNNNNNGG	4 cut(s)	13, 136, 289, 504
BseMII	CTCAG	5 cut(s)	123, 167, 477, 531, 570
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	3 cut(s)	235, 239, 371
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	1 cut(s)	6
BsiEI	CGRYCG	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	472
BslI	CCNNNNNNNGG	4 cut(s)	13, 136, 289, 504
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	6
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	186, 388, 562
BspACI	CCGC	5 cut(s)	7, 153, 166, 251, 260
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	5 cut(s)	122, 168, 478, 532, 571
BspLI	GGNNCC	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	229
BspPI	GGATC	2 cut(s)	181, 557
BspTI	CTTAAG	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	3 cut(s)	186, 388, 562
Bst2UI	CCWGG	2 cut(s)	191, 568
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	581
BstAFI	CTTAAG	1 cut(s)	416
BstDEI	CTNAG	5 cut(s)	109, 176, 486, 540, 579
BstF5I	GGATG	3 cut(s)	117, 391, 597
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	3 cut(s)	189, 391, 565
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	3 cut(s)	186, 388, 562
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 260
BstNI	CCWGG	2 cut(s)	191, 568
BstNSI	RCATGY	2 cut(s)	433, 533
BstSCI	CCNGG	2 cut(s)	189, 566
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	235, 239, 371
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	117, 391, 597
BtsIMutI	CAGTG	1 cut(s)	537
CfoI	GCGC	1 cut(s)	492
Cfr13I	GGNCC	2 cut(s)	4, 139
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	3 cut(s)	430, 458, 530
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	5 cut(s)	109, 176, 486, 540, 579
DpnI	GATC	3 cut(s)	188, 390, 564
DpnII	GATC	3 cut(s)	186, 388, 562
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	79, 395
Eco88I	CYCGRG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	189, 566
FaeI	CATG	3 cut(s)	433, 461, 533
FaiI	YATR	8 cut(s)	11, 23, 80, 403, 408, 431, 459, 531
FatI	CATG	3 cut(s)	429, 457, 529
FblI	GTMKAC	2 cut(s)	269, 339
Fnu4HI	GCNGC	7 cut(s)	7, 153, 228, 249, 252, 261, 360
FokI	GGATG	3 cut(s)	104, 398, 604
Fsp4HI	GCNGC	7 cut(s)	7, 153, 228, 249, 252, 261, 360
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	7 cut(s)	7, 153, 228, 249, 252, 261, 360
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	1 cut(s)	472
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	3 cut(s)	433, 461, 533
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HincII	GTYRAC	2 cut(s)	160, 270
HindII	GTYRAC	2 cut(s)	160, 270
HinfI	GANTC	3 cut(s)	104, 439, 466
HpaII	CCGG	1 cut(s)	472
Hpy166II	GTNNAC	3 cut(s)	160, 270, 340
Hpy188I	TCNGA	4 cut(s)	70, 177, 238, 375
Hpy188III	TCNNGA	5 cut(s)	101, 137, 208, 287, 485
Hpy8I	GTNNAC	3 cut(s)	160, 270, 340
Hpy99I	CGWCG	2 cut(s)	59, 274
HpyAV	CCTTC	3 cut(s)	103, 349, 503
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 260
HpyF3I	CTNAG	5 cut(s)	109, 176, 486, 540, 579
Hsp92II	CATG	3 cut(s)	433, 461, 533
HspAI	GCGC	1 cut(s)	490
Kzo9I	GATC	3 cut(s)	186, 388, 562
Lsp1109I	GCAGC	3 cut(s)	235, 239, 371
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	1 cut(s)	264
MalI	GATC	3 cut(s)	188, 390, 564
MboI	GATC	3 cut(s)	186, 388, 562
MboII	GAAGA	3 cut(s)	335, 566, 598
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	4 cut(s)	33, 72, 365, 598
MlyI	GAGTC	2 cut(s)	113, 433
MmeI	TCCRAC	1 cut(s)	332
MseI	TTAA	2 cut(s)	26, 417
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	362
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	2 cut(s)	191, 568
MvaI	CCWGG	2 cut(s)	191, 568
MwoI	GCNNNNNNNGC	2 cut(s)	257, 260
NdeII	GATC	3 cut(s)	186, 388, 562
NlaIII	CATG	3 cut(s)	433, 461, 533
NlaIV	GGNNCC	1 cut(s)	141
NspI	RCATGY	2 cut(s)	433, 533
PaeR7I	CTCGAG	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	466
PkrI	GCNGC	7 cut(s)	8, 154, 229, 250, 253, 262, 361
PleI	GAGTC	2 cut(s)	112, 433
PpsI	GAGTC	2 cut(s)	112, 433
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	2 cut(s)	189, 566
PspGI	CCWGG	2 cut(s)	189, 566
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	2 cut(s)	4, 139
PspPPI	RGGWCCY	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	434
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	26, 417
SatI	GCNGC	7 cut(s)	7, 153, 228, 249, 252, 261, 360
Sau3AI	GATC	3 cut(s)	186, 388, 562
Sau96I	GGNCC	2 cut(s)	4, 139
SchI	GAGTC	2 cut(s)	113, 433
ScrFI	CCNGG	2 cut(s)	191, 568
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	7 cut(s)	165, 195, 203, 232, 269, 364, 575
SfaNI	GCATC	1 cut(s)	441
SfcI	CTRYAG	1 cut(s)	225
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	139
SlaI	CTCGAG	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	3 cut(s)	101, 287, 416
SmoI	CTYRAG	3 cut(s)	101, 287, 416
Sse9I	AATT	4 cut(s)	33, 72, 365, 598
SsiI	CCGC	5 cut(s)	7, 153, 166, 251, 260
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	189, 566
TaaI	ACNGT	1 cut(s)	344
TaqI	TCGA	4 cut(s)	102, 269, 346, 552
TasI	AATT	4 cut(s)	33, 72, 365, 598
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	4 cut(s)	9, 155, 254, 263
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	2 cut(s)	26, 417
Tru9I	TTAA	2 cut(s)	26, 417
TscAI	CASTG	1 cut(s)	544
TseI	GCWGC	3 cut(s)	227, 248, 359
TspDTI	ATGAA	2 cut(s)	446, 599
TspGWI	ACGGA	2 cut(s)	55, 287
TspRI	CASTG	1 cut(s)	544
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	598
XceI	RCATGY	2 cut(s)	433, 533
XhoI	CTCGAG	1 cut(s)	101
XmiI	GTMKAC	2 cut(s)	269, 339
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.