Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Reverse (-)

43733908 .. 43736041

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG332400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATGAGAAATGAAGATTTACAAGCAGCAGCAGCATGGAAGGTTACAATGATGATGGTGTCAAGGTATTTCAGGCGAACATTGTTTGCTGCAGCCAAATCAGAACCTTCTGGTGCTGCTTCTATGGCTAAGATGACGGCTCACAACCCACTTGAGGAATTCTTTGAAGCAGATTTGGATCCTCCCATGACGTGCCGGACCCGATTTGTTATCTCAAGCAATCCAGAAATAGCTGGTATTGTCCCAGAACCAGACATTGACACTTATATGAAGGTATGCCGTTTGATAATAGTCAATTTGGTAATAACCGCAAAAGGGACTCCAGTTTCTCTAATTTTACCAGTTCCTCTTATCAAAATGCTGTTATCTTTATTTCACAGAGTGAATGATTTTTCAGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

134

Amino Acids

14.92

Weight (kDa)

7.8

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	309
AclWI	GGATC	2 cut(s)	173, 186
AcsI	RAATTY	1 cut(s)	158
AdeI	CACNNNGTG	1 cut(s)	382
AfiI	CCNNNNNNNGG	2 cut(s)	154, 315
AgsI	TTSAA	1 cut(s)	167
AjiI	CACGTC	1 cut(s)	192
AluBI	AGCT	2 cut(s)	233, 398
AluI	AGCT	2 cut(s)	233, 398
AlwI	GGATC	2 cut(s)	173, 186
ApeKI	GCWGC	6 cut(s)	26, 29, 32, 89, 92, 116
ApoI	RAATTY	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	198
BamHI	GGATCC	1 cut(s)	178
BbvI	GCAGC	6 cut(s)	38, 41, 44, 76, 103, 104
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	2 cut(s)	153, 264
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	6 cut(s)	27, 30, 33, 90, 93, 117
BlsI	GCNGC	6 cut(s)	28, 31, 34, 91, 94, 118
Bme18I	GGWCC	1 cut(s)	198
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	2 cut(s)	180, 200
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	173, 199
BsaBI	GATNNNNATC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 315
Bse1I	ACTGG	2 cut(s)	323, 341
Bse8I	GATNNNNATC	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	154, 315
BseNI	ACTGG	2 cut(s)	323, 341
BseXI	GCAGC	6 cut(s)	38, 41, 44, 76, 103, 104
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	2 cut(s)	227, 331
BslI	CCNNNNNNNGG	2 cut(s)	154, 315
BsmFI	GGGAC	2 cut(s)	227, 331
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	180, 200
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	2 cut(s)	173, 186
BsrI	ACTGG	2 cut(s)	323, 341
BssMI	GATC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	129
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 125
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	6 cut(s)	38, 41, 44, 76, 103, 104
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	198
CviAII	CATG	2 cut(s)	36, 187
CviJI	RGCY	5 cut(s)	95, 128, 140, 233, 398
CviKI_1	RGCY	5 cut(s)	95, 128, 140, 233, 398
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DraIII	CACNNNGTG	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	158
FaeI	CATG	2 cut(s)	39, 190
FaiI	YATR	6 cut(s)	37, 125, 188, 267, 269, 277
FaqI	GGGAC	2 cut(s)	227, 331
FatI	CATG	2 cut(s)	35, 186
Fnu4HI	GCNGC	6 cut(s)	27, 30, 33, 90, 93, 117
Fsp4HI	GCNGC	6 cut(s)	27, 30, 33, 90, 93, 117
GluI	GCNGC	6 cut(s)	27, 30, 33, 90, 93, 117
GsuI	CTGGAG	1 cut(s)	306
HapII	CCGG	1 cut(s)	196
Hin1II	CATG	2 cut(s)	39, 190
HinfI	GANTC	1 cut(s)	319
HpaII	CCGG	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	34, 117, 265
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 125
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	39, 190
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	9 cut(s)	58, 96, 209, 219, 237, 258, 264, 336, 354
Lsp1109I	GCAGC	6 cut(s)	38, 41, 44, 76, 103, 104
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	26
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	3 cut(s)	158, 295, 333
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	3 cut(s)	148, 192, 357
MseI	TTAA	1 cut(s)	403
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	32, 125
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	39, 190
NlaIV	GGNNCC	2 cut(s)	180, 200
PkrI	GCNGC	6 cut(s)	28, 31, 34, 91, 94, 118
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	180, 200
PspPI	GGNCC	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	6 cut(s)	27, 30, 33, 90, 93, 117
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	198
SchI	GAGTC	1 cut(s)	313
SetI	ASST	7 cut(s)	45, 68, 109, 194, 235, 276, 400
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	152, 214
SmoI	CTYRAG	2 cut(s)	152, 214
Sse9I	AATT	3 cut(s)	158, 295, 333
SsiI	CCGC	1 cut(s)	309
TaiI	ACGT	1 cut(s)	194
TasI	AATT	3 cut(s)	158, 295, 333
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TseI	GCWGC	6 cut(s)	26, 29, 32, 89, 92, 116
TspDTI	ATGAA	2 cut(s)	27, 284
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.