Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007821.1

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Reverse (-)

17036 .. 19808

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007821.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggcagctcggaagcgagcttcaacaaactcgtcctcctcgactcaaaccaaaccaagcgatcgcgagccacccaaaacccaagaagcagcagcagaagcgccaatctcagcacccaagtctggtgtgattctgaagctgacggcgttgttctccgtcccctacttttacctggtcttggtaatcaggaagaaggcacccagcgccgacgagattgaaaccgtcgagaaaggtggtcgaagttggaaggcatctgaactgcgtctgaagtcttgggatgatctcaataagctatggtttgtcctgcttaaggagaaaaatatgctgatgactcaacgtcagatgcttcacgcacagaatcttcattttcctaatcctgagcgccttcccaaagtgaggaagtcaatgtgtcgtatcaagcacgtactcactgagagagcaattgaagaacccgattccaggggtctgctgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

158

Amino Acids

17.99

Weight (kDa)

10.09

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccII	CGCG	1 cut(s)	66
AcuI	CTGAAG	2 cut(s)	155, 287
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	5 cut(s)	122, 178, 310, 396, 459
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	3 cut(s)	24, 218, 446
AhdI	GACNNNNNGTC	1 cut(s)	336
AjnI	CCWGG	2 cut(s)	171, 458
AluBI	AGCT	4 cut(s)	8, 20, 139, 292
AluI	AGCT	4 cut(s)	8, 20, 139, 292
ApeKI	GCWGC	3 cut(s)	5, 89, 92
AsiSI	GCGATCGC	1 cut(s)	64
AspLEI	GCGC	3 cut(s)	103, 206, 384
BanI	GGYRCC	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	17, 101, 104
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	2 cut(s)	173, 460
BfoI	RGCGCY	3 cut(s)	104, 207, 385
BfrI	CTTAAG	1 cut(s)	308
BisI	GCNGC	3 cut(s)	6, 90, 93
BlsI	GCNGC	3 cut(s)	7, 91, 94
Bme1390I	CCNGG	2 cut(s)	173, 460
BmeRI	GACNNNNNGTC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	173, 460
BmsI	GCATC	2 cut(s)	260, 333
Bpu10I	CCTNAGC	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	459
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	5 cut(s)	122, 178, 310, 396, 459
BseBI	CCWGG	2 cut(s)	173, 460
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	5 cut(s)	122, 178, 310, 396, 459
BseMII	CTCAG	4 cut(s)	123, 369, 423, 461
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	3 cut(s)	17, 101, 104
BseYI	CCCAGC	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	5 cut(s)	122, 178, 310, 396, 459
BsmFI	GGGAC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	61, 280
Bsp68I	TCGCGA	1 cut(s)	66
BspCNI	CTCAG	4 cut(s)	122, 370, 424, 462
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	196
BspTI	CTTAAG	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	2 cut(s)	61, 280
Bst2UI	CCWGG	2 cut(s)	173, 460
Bst4CI	ACNGT	1 cut(s)	223
BstAFI	CTTAAG	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	424
BstC8I	GCNNGC	2 cut(s)	18, 68
BstDEI	CTNAG	4 cut(s)	109, 378, 432, 470
BstENI	CCTNNNNNAGG	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	66
BstH2I	RGCGCY	3 cut(s)	104, 207, 385
BstHHI	GCGC	3 cut(s)	103, 206, 384
BstKTI	GATC	2 cut(s)	64, 283
BstMBI	GATC	2 cut(s)	61, 280
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 203
BstNI	CCWGG	2 cut(s)	173, 460
BstSCI	CCNGG	2 cut(s)	171, 458
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	17, 101, 104
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	429
BtuMI	TCGCGA	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	18, 68
CfoI	GCGC	3 cut(s)	103, 206, 384
CseI	GACGC	1 cut(s)	251
CsiI	ACCWGGT	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	425
CviJI	RGCY	5 cut(s)	8, 20, 70, 139, 292
CviKI_1	RGCY	5 cut(s)	8, 20, 70, 139, 292
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	4 cut(s)	109, 378, 432, 470
DpnI	GATC	2 cut(s)	63, 282
DpnII	GATC	2 cut(s)	61, 280
DriI	GACNNNNNGTC	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	336
Eco57I	CTGAAG	2 cut(s)	155, 287
EcoNI	CCTNNNNNAGG	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	171, 458
FaiI	YATR	2 cut(s)	295, 323
FaqI	GGGAC	1 cut(s)	143
Fnu4HI	GCNGC	3 cut(s)	6, 90, 93
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	6, 90, 93
GlaI	GCGC	3 cut(s)	102, 205, 383
GluI	GCNGC	3 cut(s)	6, 90, 93
GsaI	CCCAGC	1 cut(s)	204
HaeII	RGCGCY	3 cut(s)	104, 207, 385
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	3 cut(s)	103, 206, 384
Hin6I	GCGC	3 cut(s)	101, 204, 382
HinP1I	GCGC	3 cut(s)	101, 204, 382
HinfI	GANTC	5 cut(s)	43, 130, 331, 358, 455
Hpy188I	TCNGA	5 cut(s)	12, 135, 256, 267, 342
Hpy188III	TCNNGA	4 cut(s)	65, 187, 226, 377
Hpy99I	CGWCG	2 cut(s)	212, 227
HpyAV	CCTTC	3 cut(s)	187, 241, 395
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	2 cut(s)	337, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 203
HpyF3I	CTNAG	4 cut(s)	109, 378, 432, 470
HpySE526I	ACGT	2 cut(s)	337, 423
HspAI	GCGC	3 cut(s)	101, 204, 382
Kzo9I	GATC	2 cut(s)	61, 280
LpnPI	CCDG	9 cut(s)	108, 158, 172, 185, 214, 317, 390, 445, 472
Lsp1109I	GCAGC	3 cut(s)	17, 101, 104
LweI	GCATC	2 cut(s)	260, 333
MabI	ACCWGGT	1 cut(s)	171
MaeII	ACGT	2 cut(s)	337, 423
MalI	GATC	2 cut(s)	63, 282
MboI	GATC	2 cut(s)	61, 280
MboII	GAAGA	3 cut(s)	202, 353, 458
MfeI	CAATTG	1 cut(s)	441
MluCI	AATT	1 cut(s)	441
MlyI	GAGTC	2 cut(s)	37, 325
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	3 cut(s)	46, 49, 390
MseI	TTAA	1 cut(s)	309
MspCI	CTTAAG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	173, 460
MunI	CAATTG	1 cut(s)	441
MvaI	CCWGG	2 cut(s)	173, 460
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	98, 203
NdeII	GATC	2 cut(s)	61, 280
NlaIV	GGNNCC	1 cut(s)	198
NruI	TCGCGA	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	130, 358, 455
PkrI	GCNGC	3 cut(s)	7, 91, 94
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	2 cut(s)	37, 325
PpsI	GAGTC	2 cut(s)	37, 325
Ppu21I	YACGTR	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	171, 458
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	2 cut(s)	171, 458
PspN4I	GGNNCC	1 cut(s)	198
PvuI	CGATCG	1 cut(s)	64
RgaI	GCGATCGC	1 cut(s)	64
RruI	TCGCGA	1 cut(s)	66
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	6, 90, 93
Sau3AI	GATC	2 cut(s)	61, 280
SchI	GAGTC	2 cut(s)	37, 325
ScrFI	CCNGG	2 cut(s)	173, 460
SetI	ASST	8 cut(s)	10, 22, 141, 174, 235, 294, 340, 426
SexAI	ACCWGGT	1 cut(s)	171
SfaAI	GCGATCGC	1 cut(s)	64
SfaNI	GCATC	2 cut(s)	260, 333
SgfI	GCGATCGC	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	171, 458
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	2 cut(s)	340, 426
TaqI	TCGA	3 cut(s)	41, 225, 238
TasI	AATT	1 cut(s)	441
TfiI	GAWTC	3 cut(s)	130, 358, 455
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	436
TseI	GCWGC	3 cut(s)	5, 89, 92
TspDTI	ATGAA	1 cut(s)	353
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	436
Vha464I	CTTAAG	1 cut(s)	308
XagI	CCTNNNNNAGG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.