Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Reverse (-)

29786345 .. 29788111

Gene Structure 1767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG296700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATGGTGGCAAGGTATTTCAGGCGAACACTGTTTGCTGCAGCCAAATCAGAAGGTTCTGGTGCTGCTTCTATGGCTAGGACGGCGGCCCACAACCCGCTTGAGGAGTTCTTTGAGGCAGATAGGAAGCCTGATGAAGAAAAGCCAGTTGTATATGGTCGAAGTTGGAAGGCATCTGAACTGCGTCTGAAGTCTTGGGATGATCTCAATAAGCTATGGTTTGTTCTGCTTAAAGAGAAAAACATGCTGATGACTCATCGTCAGATGCTTCACGCACAGAATCTTCGTTTTCCTAATCCTGAGCGCCTTCCCAAAGTGAGGAAGTCAATGTGTCGTATCAAGCACGTACTCACTGAGAGAGCAATTGAAGAACCCGATTCCAGGAGGTCTGCTGAGATGAAGAGGATGATAAATGCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

140

Amino Acids

16.47

Weight (kDa)

10.11

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRP-L47	PF06984	34 - 120	1.9e-34	Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Ribosomal_L29	PF00831	59 - 120	7.6e-09	Ribosomal L29 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	86, 98
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	3 cut(s)	103, 318, 381
AgsI	TTSAA	1 cut(s)	368
AhdI	GACNNNNNGTC	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	3 cut(s)	38, 41, 65
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	88
BbvI	GCAGC	3 cut(s)	25, 52, 53
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	382
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	307
BisI	GCNGC	4 cut(s)	39, 42, 66, 87
BlsI	GCNGC	4 cut(s)	40, 43, 67, 88
Bme1390I	CCNGG	1 cut(s)	382
BmeRI	GACNNNNNGTC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	382
BmsI	GCATC	2 cut(s)	182, 255
Bpu10I	CCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 318, 381
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	382
BseGI	GGATG	2 cut(s)	205, 411
BseLI	CCNNNNNNNGG	3 cut(s)	103, 318, 381
BseMII	CTCAG	3 cut(s)	291, 345, 384
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	25, 52, 53
BshFI	GGCC	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	103, 318, 381
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	2 cut(s)	86, 98
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	3 cut(s)	292, 346, 385
BspMAI	CTGCAG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	395
BstBAI	YACGTR	1 cut(s)	346
BstDEI	CTNAG	3 cut(s)	300, 354, 393
BstF5I	GGATG	2 cut(s)	205, 411
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 83
BstNI	CCWGG	1 cut(s)	382
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	380
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	25, 52, 53
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	205, 411
BtsIMutI	CAGTG	2 cut(s)	29, 351
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	88
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	6 cut(s)	44, 77, 89, 130, 145, 214
CviKI_1	RGCY	6 cut(s)	44, 77, 89, 130, 145, 214
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	3 cut(s)	300, 354, 393
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
DriI	GACNNNNNGTC	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	395
Eam1105I	GACNNNNNGTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	380
FaeI	CATG	1 cut(s)	247
FaiI	YATR	5 cut(s)	74, 154, 156, 217, 245
FatI	CATG	1 cut(s)	243
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	39, 42, 66, 87
FokI	GGATG	2 cut(s)	212, 418
Fsp4HI	GCNGC	4 cut(s)	39, 42, 66, 87
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	4 cut(s)	39, 42, 66, 87
HaeII	RGCGCY	1 cut(s)	307
HaeIII	GGCC	1 cut(s)	89
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HinfI	GANTC	3 cut(s)	253, 280, 377
Hpy188I	TCNGA	4 cut(s)	52, 178, 189, 264
Hpy188III	TCNNGA	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	47, 163, 317
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 83
HpyF3I	CTNAG	3 cut(s)	300, 354, 393
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	247
HspAI	GCGC	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	7 cut(s)	7, 45, 144, 159, 312, 367, 394
Lsp1109I	GCAGC	3 cut(s)	25, 52, 53
LweI	GCATC	2 cut(s)	182, 255
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	345
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	4 cut(s)	149, 275, 380, 412
MfeI	CAATTG	1 cut(s)	363
MluCI	AATT	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	97, 109, 312, 378, 396
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	382
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	74, 83
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	247
NspI	RCATGY	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	280, 377
PfoI	TCCNGGA	1 cut(s)	380
PkrI	GCNGC	4 cut(s)	40, 43, 67, 88
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PspPI	GGNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	4 cut(s)	39, 42, 66, 87
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	382
SetI	ASST	5 cut(s)	17, 58, 216, 348, 389
SfaNI	GCATC	2 cut(s)	182, 255
SfcI	CTRYAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	2 cut(s)	86, 98
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	363
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	280, 377
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	2 cut(s)	36, 358
TseI	GCWGC	3 cut(s)	38, 41, 65
TspDTI	ATGAA	2 cut(s)	150, 413
TspRI	CASTG	2 cut(s)	36, 358
XceI	RCATGY	1 cut(s)	247
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.