Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004187

Physical Location & Seq

Genomic Coordinates Forward (+)

38974935 .. 38978266

Gene Structure 3332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGAAATGAAGATTTACAAGCAGCGGCAGGGAAGGTTACAATGATGATGGTGTCAAGGTATTTCAGGCGAACATTGTTTGCTGCAGCCAAATCAGAACCTTCTGGTGCTGCTTCTATGGCTAAGATGACGGCTCACAACCCACTTGAGGAATTCATTGAAGCAGATTTGGATCCTCCCATGACGTGCCGGACCCGATTTGTTATCTCAAGCAATCCAGAAATAGCTGGTATTGTCCCAGAACCAGACATTGACACTTATATGAAGAAGTGCACAAGAACAAGGCAAGAGCACACCAAAATCTCCGCAGATACATGCCAAACAATATTAAAGGCCAAAACTCCAATGACATCTACTTTTTGCTCACTACATGGCATCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-L47

Protein Analysis

127

Amino Acids

14.1

Weight (kDa)

8.4

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07830
fragaria_vesca	FvH4_5g16620
malus_domestica	MD06G1178500.v1.1 MD14G1184900.v1.1
prunus_persica	Prupe.5G177600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0130991 RchiOBHm_Chr3g0484341 RchiOBHm_Chr3g0484351 RchiOBHm_Chr3g0484411 RchiOBHm_Chr7g0179521 RchiOBHm_Chr7g0240791
rosa_laevigata	RLG00000005345
rosa_multiflora	Rmu_sc0007821.1_g000005
rosa_roxburghii	Rroxscaffold_2G00113410 Rroxscaffold_3G00273790 Rroxscaffold_6G00397760
rosa_rugosa	Rorug02G0294400 Rorug03G0211000 Rorug06G0425100.1 Rorug06G0425200.1
rosa_samantha	Rh2AG345800 Rh2BG353900 Rh2CG332400 Rh2DG372000 Rh3BG296700 Rh6AG067700 Rh7AG025100 Rh7BG024600 Rh7CG025700 Rh7DG025800
rosa_wichuraiana	Rw0G018990 Rw3G023460 Rw7G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	26, 306
AclWI	GGATC	2 cut(s)	167, 180
AcsI	RAATTY	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	161
AjiI	CACGTC	1 cut(s)	186
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Alw21I	GWGCWC	2 cut(s)	275, 294
Alw44I	GTGCAC	1 cut(s)	271
AlwI	GGATC	2 cut(s)	167, 180
AoxI	GGCC	1 cut(s)	333
ApaLI	GTGCAC	1 cut(s)	271
ApeKI	GCWGC	4 cut(s)	23, 83, 86, 110
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	172
Bbv12I	GWGCWC	2 cut(s)	275, 294
BbvI	GCAGC	4 cut(s)	35, 70, 97, 98
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	5 cut(s)	24, 27, 84, 87, 111
BlsI	GCNGC	5 cut(s)	25, 28, 85, 88, 112
Bme18I	GGWCC	1 cut(s)	192
BmgBI	CACGTC	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	174, 194
BpuEI	CTTGAG	2 cut(s)	167, 193
BsaBI	GATNNNNATC	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	171
BseGI	GGATG	1 cut(s)	375
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	4 cut(s)	35, 70, 97, 98
BshFI	GGCC	1 cut(s)	335
BsiHKAI	GWGCWC	2 cut(s)	275, 294
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	275, 294
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	2 cut(s)	26, 306
BspANI	GGCC	1 cut(s)	335
BspLI	GGNNCC	2 cut(s)	174, 194
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	2 cut(s)	167, 180
BssMI	GATC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	375
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	4 cut(s)	35, 70, 97, 98
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	335
BtrI	CACGTC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	192
CviAII	CATG	3 cut(s)	181, 315, 371
CviJI	RGCY	5 cut(s)	89, 122, 134, 227, 335
CviKI_1	RGCY	5 cut(s)	89, 122, 134, 227, 335
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	152
FaeI	CATG	3 cut(s)	184, 318, 374
FaiI	YATR	6 cut(s)	119, 182, 261, 263, 316, 372
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	180, 314, 370
Fnu4HI	GCNGC	5 cut(s)	24, 27, 84, 87, 111
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	5 cut(s)	24, 27, 84, 87, 111
GluI	GCNGC	5 cut(s)	24, 27, 84, 87, 111
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	3 cut(s)	184, 318, 374
HpaII	CCGG	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	2 cut(s)	97, 383
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	2 cut(s)	28, 111
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	86, 273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	184, 318, 374
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	8 cut(s)	15, 52, 90, 203, 213, 231, 252, 258
Lsp1109I	GCAGC	4 cut(s)	35, 70, 97, 98
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	2 cut(s)	23, 277
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	2 cut(s)	275, 294
MluCI	AATT	1 cut(s)	152
MnlI	CCTC	2 cut(s)	142, 186
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	3 cut(s)	184, 318, 374
NlaIV	GGNNCC	2 cut(s)	174, 194
NspI	RCATGY	1 cut(s)	318
PkrI	GCNGC	5 cut(s)	25, 28, 85, 88, 112
PspN4I	GGNNCC	2 cut(s)	174, 194
PspPI	GGNCC	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	5 cut(s)	24, 27, 84, 87, 111
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	192
SduI	GDGCHC	2 cut(s)	275, 294
SetI	ASST	5 cut(s)	39, 62, 103, 188, 229
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	146, 208
SmoI	CTYRAG	2 cut(s)	146, 208
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	2 cut(s)	26, 306
SspI	AATATT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	188
TasI	AATT	1 cut(s)	152
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseI	GCWGC	4 cut(s)	23, 83, 86, 110
TspDTI	ATGAA	3 cut(s)	24, 145, 278
VneI	GTGCAC	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.