AT1G10095

Protein prenyltransferase alpha subunit repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001731
Physical Location & Seq
Reverse (-)
3296516 .. 3300516
4001 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10095.1

Sequence Viewer

Length: 1263 bp
ATGAAACAAGGACCATCTTCTGAAGATGATTGCTTTAGCTTGTTGAAGCAGTTCGAGCATGTCCTTGAATCTGACCCTCTTATTGATGAAGTAGGGTTTATTCACCCCTCACAGTTCACCATGCTCGATAAAGAAGCAGGTTTCTCCAATGAATTCCAGCCTAACAATGGAACCTCAAGCAAGTTCTGGAATCAAGATCACAAATTGGGAATATCAACTGATATACTTGTTCAATTATGTAAAGATGCCAAACATGTGTTTCTGCTAGCGCTTCAGGAGTACAAATCCCATGGAAACGCATGTGATGAGTCTCAGATTAAGAATATCTCTTGTTCTCCCTGTATTCCCGAGAGTGACGTCATGAAGCATAGCCAATCTGTTTTGCTGTTGAGCTCAGACTTTGGAACTGCATGGAATGCTAGGAAGTTGATTTTGTCAAAAAAGGATCACCTTTCGGCATTCACAGAAGAACTTCGTCTTTCTGGGCTCATTCTTTCAAATTCCCCAAAGAGTGAGTCAACATGGAGCCATAGAAGGTGGATAATTAAGATGATTTCCCAGAGTTTTTCTACACTACAAGAGATTATAACCAAAGAATCTGAGTTAGTGGAATCAATAGGCGAGAGATCAAAGATGAACTATCGTGCATGGTATCACCGTTGCTGGTTGGTTTCTTACATGACAATTGAGCAGGTGATACAAGAGTTGAACAAATCTAAAAGATGGGCTGGGCTTCATGTAGCCGATAGTTCTTGCTTCCATTATCGCAGACGGCTGATGCTCAAGATTCTGGAGTCACTTTATGTGAAAGGAAGCAGCGCTTATGATAAAACTGAGGCACGCAAAATCTGGAAGGAAGAGCTGGATTGGAATGAAGAATTGGTAGAACGTTACGTGGGACGAGAGGCACTATGGCTTCACCGGCGGTTCCTCTCTCTTAATTGGATAATGTATTTCGCTTGCAATCATTCAGATGCTTCACCTGAAACCGGAGAGAGTATTATTATGAATGAAGAAATTGCCATCTTCATTGATAATGAGATCCGTCTTCTAGATTCTTCTATGACCGTTCCGGATACCAAATTTGAAGATTTTCAAGCTCAAGCATTGCATGCTGCTGTCTACACGCTATGGCTGACAAAGAGCATTCCAGTACTGTGGAGAATGCTCGAGGAGAAGCTTGGAACAGAGAAAGTGAAGTGTGTACTGAACACAATTGCTCAAGAGAGACCCTCGCTTCTGCATCATTTGGTGAATGTCTGA

Protein Analysis

420

Amino Acids

48.65

Weight (kDa)

6.0

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPTA PF01239 155 - 184 5.5e-06 Protein prenyltransferase alpha subunit repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 587
AarI CACCTGC 1 cut(s) 682
AatII GACGTC 1 cut(s) 360
Acc36I ACCTGC 2 cut(s) 128, 682
AccI GTMKAC 1 cut(s) 1122
AccIII TCCGGA 1 cut(s) 1072
AciI CCGC 1 cut(s) 925
AclI AACGTT 1 cut(s) 889
AclWI GGATC 2 cut(s) 453, 1036
AcsI RAATTY 3 cut(s) 152, 499, 1082
AcuI CTGAAG 2 cut(s) 42, 257
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 3 cut(s) 281, 1155, 1206
AfeI AGCGCT 2 cut(s) 270, 820
AfiI CCNNNNNNNGG 2 cut(s) 167, 989
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 7 cut(s) 46, 68, 233, 498, 709, 1088, 1097
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AluBI AGCT 5 cut(s) 39, 393, 862, 1100, 1180
AluI AGCT 5 cut(s) 39, 393, 862, 1100, 1180
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 2 cut(s) 315, 1222
AlwI GGATC 2 cut(s) 453, 1036
Ama87I CYCGRG 2 cut(s) 347, 1169
Aor13HI TCCGGA 1 cut(s) 1072
Aor51HI AGCGCT 2 cut(s) 270, 820
ApeKI GCWGC 2 cut(s) 816, 1115
ApoI RAATTY 3 cut(s) 152, 499, 1082
ArsI GACNNNNNNTTYG 2 cut(s) 500, 532
Asp700I GAANNNNTTC 3 cut(s) 50, 471, 1092
AspLEI GCGC 2 cut(s) 271, 821
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 7 cut(s) 95, 109, 440, 647, 706, 911, 972
AsuNHI GCTAGC 1 cut(s) 265
AvaI CYCGRG 2 cut(s) 347, 1169
AvaII GGWCC 1 cut(s) 11
BaeI ACNNNNGTAYC 2 cut(s) 689, 722
BanII GRGCYC 2 cut(s) 395, 489
BbsI GAAGAC 1 cut(s) 1040
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 2 cut(s) 828, 1102
BccI CCATC 3 cut(s) 22, 717, 1031
BceAI ACGGC 1 cut(s) 788
BciVI GTATCC 1 cut(s) 1069
BcoDI GTCTC 2 cut(s) 315, 1222
BfaI CTAG 3 cut(s) 266, 420, 1052
BfoI RGCGCY 2 cut(s) 272, 822
BfuAI ACCTGC 2 cut(s) 128, 682
BfuI GTATCC 1 cut(s) 1069
BisI GCNGC 2 cut(s) 817, 1116
BlsI GCNGC 2 cut(s) 818, 1117
BmcAI AGTACT 1 cut(s) 1155
Bme18I GGWCC 1 cut(s) 11
BmeT110I CYCGRG 2 cut(s) 347, 1169
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 3 cut(s) 172, 527, 929
BmsI GCATC 4 cut(s) 235, 768, 964, 1252
BmtI GCTAGC 1 cut(s) 269
BpiI GAAGAC 1 cut(s) 1040
BplI GAGNNNNNCTC 2 cut(s) 1217, 1249
BpmI CTGGAG 1 cut(s) 812
BpuEI CTTGAG 4 cut(s) 160, 767, 1086, 1206
BsaAI YACGTR 1 cut(s) 895
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 1222
BsaJI CCNNGG 1 cut(s) 289
BsaWI WCCGGW 2 cut(s) 989, 1072
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 989
Bse118I RCCGGY 1 cut(s) 921
Bse1I ACTGG 1 cut(s) 1151
Bse3DI GCAATG 1 cut(s) 1106
BseAI TCCGGA 1 cut(s) 1072
BseDI CCNNGG 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 167, 989
BseMI GCAATG 1 cut(s) 1106
BseMII CTCAG 4 cut(s) 326, 408, 591, 825
BseNI ACTGG 1 cut(s) 1151
BseRI GAGGAG 1 cut(s) 1187
BseXI GCAGC 2 cut(s) 828, 1102
BseYI CCCAGC 1 cut(s) 728
BsiHKAI GWGCWC 1 cut(s) 395
BsiHKCI CYCGRG 2 cut(s) 347, 1169
BsiSI CCGG 3 cut(s) 922, 990, 1073
BslFI GGGAC 1 cut(s) 912
BslI CCNNNNNNNGG 2 cut(s) 167, 989
BsmAI GTCTC 2 cut(s) 315, 1222
BsmFI GGGAC 1 cut(s) 912
BsmI GAATGC 4 cut(s) 421, 458, 1146, 1170
Bso31I GGTCTC 1 cut(s) 1222
BsoBI CYCGRG 2 cut(s) 347, 1169
Bsp1286I GDGCHC 2 cut(s) 395, 489
Bsp13I TCCGGA 1 cut(s) 1072
Bsp143I GATC 4 cut(s) 196, 445, 626, 1041
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 1 cut(s) 925
BspCNI CTCAG 4 cut(s) 325, 407, 592, 826
BspEI TCCGGA 1 cut(s) 1072
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 3 cut(s) 172, 527, 929
BspMI ACCTGC 2 cut(s) 128, 682
BspOI GCTAGC 1 cut(s) 269
BspPI GGATC 2 cut(s) 453, 1036
BspQI GCTCTTC 1 cut(s) 852
BspTNI GGTCTC 1 cut(s) 1222
BsrDI GCAATG 1 cut(s) 1106
BsrFI RCCGGY 1 cut(s) 921
BsrI ACTGG 1 cut(s) 1151
BssAI RCCGGY 1 cut(s) 921
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 4 cut(s) 196, 445, 626, 1041
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 4 cut(s) 114, 659, 1069, 1158
Bst6I CTCTTC 1 cut(s) 852
BstACI GRCGYC 1 cut(s) 357
BstAPI GCANNNNNTGC 2 cut(s) 416, 1112
BstBAI YACGTR 1 cut(s) 895
BstC8I GCNNGC 4 cut(s) 267, 841, 961, 1113
BstDEI CTNAG 4 cut(s) 312, 394, 600, 834
BstDSI CCRYGG 1 cut(s) 289
BstH2I RGCGCY 2 cut(s) 272, 822
BstHHI GCGC 2 cut(s) 271, 821
BstKTI GATC 4 cut(s) 199, 448, 629, 1044
BstMAI GTCTC 2 cut(s) 315, 1222
BstMBI GATC 4 cut(s) 196, 445, 626, 1041
BstMWI GCNNNNNNNGC 4 cut(s) 55, 416, 922, 1112
BstNSI RCATGY 4 cut(s) 62, 257, 303, 1115
BstV1I GCAGC 2 cut(s) 828, 1102
BstV2I GAAGAC 1 cut(s) 1040
BstX2I RGATCY 1 cut(s) 1041
BstXI CCANNNNNNTGG 1 cut(s) 1158
BstYI RGATCY 1 cut(s) 1041
BsuI GTATCC 1 cut(s) 1069
BtgI CCRYGG 1 cut(s) 289
BveI ACCTGC 2 cut(s) 128, 682
Cac8I GCNNGC 4 cut(s) 267, 841, 961, 1113
CciI TCATGA 1 cut(s) 360
CfoI GCGC 2 cut(s) 271, 821
Cfr10I RCCGGY 1 cut(s) 921
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 3 cut(s) 280, 1154, 1205
CviQI GTAC 3 cut(s) 280, 1154, 1205
DdeI CTNAG 4 cut(s) 312, 394, 600, 834
DpnI GATC 4 cut(s) 198, 447, 628, 1043
DpnII GATC 4 cut(s) 196, 445, 626, 1041
Eam1104I CTCTTC 1 cut(s) 852
EarI CTCTTC 1 cut(s) 852
Ecl136II GAGCTC 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 2 cut(s) 395, 489
Eco31I GGTCTC 1 cut(s) 1222
Eco47I GGWCC 1 cut(s) 11
Eco47III AGCGCT 2 cut(s) 270, 820
Eco53kI GAGCTC 1 cut(s) 393
Eco57I CTGAAG 2 cut(s) 42, 257
Eco88I CYCGRG 2 cut(s) 347, 1169
EcoICRI GAGCTC 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 289
EcoT38I GRGCYC 2 cut(s) 395, 489
ErhI CCWWGG 1 cut(s) 289
FalI AAGNNNNNCTT 2 cut(s) 805, 837
FaqI GGGAC 1 cut(s) 912
FblI GTMKAC 1 cut(s) 1122
Fnu4HI GCNGC 2 cut(s) 817, 1116
FriOI GRGCYC 2 cut(s) 395, 489
Fsp4HI GCNGC 2 cut(s) 817, 1116
FspBI CTAG 3 cut(s) 266, 420, 1052
GlaI GCGC 2 cut(s) 270, 820
GluI GCNGC 2 cut(s) 817, 1116
GsaI CCCAGC 1 cut(s) 732
GsuI CTGGAG 1 cut(s) 812
HaeII RGCGCY 2 cut(s) 272, 822
HapII CCGG 3 cut(s) 922, 990, 1073
HhaI GCGC 2 cut(s) 271, 821
Hin1I GRCGYC 1 cut(s) 357
Hin6I GCGC 2 cut(s) 269, 819
HinP1I GCGC 2 cut(s) 269, 819
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HindIII AAGCTT 1 cut(s) 1178
HinfI GANTC 9 cut(s) 68, 190, 308, 515, 596, 611, 787, 794, 1055
HpaII CCGG 3 cut(s) 922, 990, 1073
HphI GGTGA 7 cut(s) 95, 109, 440, 647, 706, 911, 972
Hpy166II GTNNAC 4 cut(s) 117, 519, 1123, 1205
Hpy188I TCNGA 7 cut(s) 22, 73, 315, 397, 601, 973, 1262
Hpy8I GTNNAC 4 cut(s) 117, 519, 1123, 1205
HpyAV CCTTC 2 cut(s) 528, 847
HpyCH4III ACNGT 4 cut(s) 114, 659, 1069, 1158
HpyCH4IV ACGT 3 cut(s) 357, 889, 894
HpyCH4V TGCA 5 cut(s) 410, 647, 963, 1111, 1243
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 416, 922, 1112
HpyF3I CTNAG 4 cut(s) 312, 394, 600, 834
HpySE526I ACGT 3 cut(s) 357, 889, 894
Hsp92I GRCGYC 1 cut(s) 357
HspAI GCGC 2 cut(s) 269, 819
Kpn2I TCCGGA 1 cut(s) 1072
Kzo9I GATC 4 cut(s) 196, 445, 626, 1041
LguI GCTCTTC 1 cut(s) 852
LmnI GCTCC 1 cut(s) 525
Lsp1109I GCAGC 2 cut(s) 828, 1102
LweI GCATC 4 cut(s) 235, 768, 964, 1252
MaeI CTAG 3 cut(s) 266, 420, 1052
MaeII ACGT 3 cut(s) 357, 889, 894
MaeIII GTNAC 3 cut(s) 353, 795, 890
MalI GATC 4 cut(s) 198, 447, 628, 1043
MboI GATC 4 cut(s) 196, 445, 626, 1041
MfeI CAATTG 2 cut(s) 684, 1215
MflI RGATCY 1 cut(s) 1041
MhlI GDGCHC 2 cut(s) 395, 489
MlyI GAGTC 3 cut(s) 317, 524, 803
MnlI CCTC 8 cut(s) 87, 118, 184, 829, 898, 941, 1165, 1243
MroI TCCGGA 1 cut(s) 1072
MroXI GAANNNNTTC 3 cut(s) 50, 471, 1092
MseI TTAA 3 cut(s) 318, 546, 939
MslI CAYNNNNRTG 1 cut(s) 972
MspI CCGG 3 cut(s) 922, 990, 1073
MunI CAATTG 2 cut(s) 684, 1215
Mva1269I GAATGC 4 cut(s) 421, 458, 1146, 1170
MwoI GCNNNNNNNGC 4 cut(s) 55, 416, 922, 1112
NcoI CCATGG 1 cut(s) 289
NdeII GATC 4 cut(s) 196, 445, 626, 1041
NheI GCTAGC 1 cut(s) 265
NlaIV GGNNCC 3 cut(s) 172, 527, 929
NmuCI GTSAC 2 cut(s) 353, 795
NspI RCATGY 4 cut(s) 62, 257, 303, 1115
PaeI GCATGC 1 cut(s) 1115
PaeR7I CTCGAG 1 cut(s) 1169
PagI TCATGA 1 cut(s) 360
PaqCI CACCTGC 1 cut(s) 682
PciI ACATGT 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 852
PctI GAATGC 4 cut(s) 421, 458, 1146, 1170
PdmI GAANNNNTTC 3 cut(s) 50, 471, 1092
PfeI GAWTC 6 cut(s) 68, 190, 596, 611, 787, 1055
PkrI GCNGC 2 cut(s) 818, 1117
PleI GAGTC 3 cut(s) 316, 523, 802
PpsI GAGTC 3 cut(s) 316, 523, 802
Ppu21I YACGTR 1 cut(s) 895
PscI ACATGT 1 cut(s) 253
PsiI TTATAA 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 395
Psp1406I AACGTT 1 cut(s) 889
PspFI CCCAGC 1 cut(s) 728
PspN4I GGNNCC 3 cut(s) 172, 527, 929
PspPI GGNCC 1 cut(s) 11
PspXI VCTCGAGB 1 cut(s) 1169
PsuI RGATCY 1 cut(s) 1041
RsaI GTAC 3 cut(s) 281, 1155, 1206
RsaNI GTAC 3 cut(s) 280, 1154, 1205
RseI CAYNNNNRTG 1 cut(s) 972
SacI GAGCTC 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 852
SaqAI TTAA 3 cut(s) 318, 546, 939
SatI GCNGC 2 cut(s) 817, 1116
Sau3AI GATC 4 cut(s) 196, 445, 626, 1041
Sau96I GGNCC 1 cut(s) 11
ScaI AGTACT 1 cut(s) 1155
SchI GAGTC 3 cut(s) 317, 524, 803
SduI GDGCHC 2 cut(s) 395, 489
SfaNI GCATC 4 cut(s) 235, 768, 964, 1252
Sfr274I CTCGAG 1 cut(s) 1169
SgrAI CRCCGGYG 1 cut(s) 921
SinI GGWCC 1 cut(s) 11
SlaI CTCGAG 1 cut(s) 1169
SmiMI CAYNNNNRTG 1 cut(s) 972
SmlI CTYRAG 5 cut(s) 175, 782, 1101, 1169, 1221
SmoI CTYRAG 5 cut(s) 175, 782, 1101, 1169, 1221
SphI GCATGC 1 cut(s) 1115
SsiI CCGC 1 cut(s) 925
SspMI CTAG 3 cut(s) 266, 420, 1052
SstI GAGCTC 1 cut(s) 395
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 4 cut(s) 114, 659, 1069, 1158
TaiI ACGT 3 cut(s) 360, 892, 897
TaqI TCGA 3 cut(s) 54, 126, 1170
TatI WGTACW 3 cut(s) 279, 1153, 1204
TfiI GAWTC 6 cut(s) 68, 190, 596, 611, 787, 1055
Tru1I TTAA 3 cut(s) 318, 546, 939
Tru9I TTAA 3 cut(s) 318, 546, 939
TseFI GTSAC 2 cut(s) 353, 795
TseI GCWGC 2 cut(s) 816, 1115
Tsp45I GTSAC 2 cut(s) 353, 795
TspGWI ACGGA 1 cut(s) 1034
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 3 cut(s) 152, 499, 1082
XbaI TCTAGA 1 cut(s) 1051
XceI RCATGY 4 cut(s) 62, 257, 303, 1115
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 1169
XmiI GTMKAC 1 cut(s) 1122
XmnI GAANNNNTTC 3 cut(s) 50, 471, 1092
XspI CTAG 3 cut(s) 266, 420, 1052
ZraI GACGTC 1 cut(s) 358
ZrmI AGTACT 1 cut(s) 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.