Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Reverse (-)

23641085 .. 23642780

Gene Structure 1696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAAGGAGAGGAGCTGCGTCGTTCCGAAGCGGACACGGTTGATCTTCTGAATCAATTCGAACGTATCTTGGAACCCGATCCCCAAATAGATGAAGTGGGATTTCTTCACCCGTCCCAGTTTTCGAAGCTGAATAAAGAGGCAGGCCATTCCTCACCCTCATCTGATGACAGTACCGTGCTGCACTCAGCTGATGGCAACTCAGTTTTTTGGAATAGGGATCATAAGTTGGGGATTTCAACGCAAGTTCTTTTTCCGTTATATGAGGCTGCTAAGCATGCGTTTATGGCAGCAAGTAGACAATATAAGGCACTTAACAGCAAATCAGATGTATCTGGGGATGAGAAGTCTTTGTATGTGTCGTTATCCTTGGATAATAGTTTTGAAAGTGACGTCATGAAGCATAGCGGGGCGCTTTTGTTGCTAAGTAGTGATTTAGGCACTGCATGGCATTCCAGGATTACAAGGACTTTGTTGCGGATGGGATTCAAACAGAACCTTTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

170

Amino Acids

18.83

Weight (kDa)

5.43

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	298
AciI	CCGC	3 cut(s)	32, 408, 478
AclWI	GGATC	2 cut(s)	74, 228
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	240, 386, 490, 504
AjnI	CCWGG	1 cut(s)	455
AluBI	AGCT	3 cut(s)	16, 130, 191
AluI	AGCT	3 cut(s)	16, 130, 191
AlwI	GGATC	2 cut(s)	74, 228
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	4 cut(s)	16, 181, 269, 290
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	101, 147
AsuII	TTCGAA	2 cut(s)	60, 125
BbvI	GCAGC	4 cut(s)	3, 168, 256, 302
BccI	CCATC	2 cut(s)	188, 475
BciT130I	CCWGG	1 cut(s)	457
BfoI	RGCGCY	1 cut(s)	416
BisI	GCNGC	4 cut(s)	17, 182, 270, 291
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	4 cut(s)	18, 183, 271, 292
Bme1390I	CCNGG	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	457
BmrI	ACTGGG	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	112
Bpu1102I	GCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	2 cut(s)	60, 125
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	346, 486
BseMII	CTCAG	2 cut(s)	201, 216
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	4 cut(s)	3, 168, 256, 302
BsgI	GTGCAG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	147
Bsp119I	TTCGAA	2 cut(s)	60, 125
Bsp143I	GATC	3 cut(s)	43, 79, 220
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	3 cut(s)	32, 408, 478
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	200, 215
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	74, 228
BspT104I	TTCGAA	2 cut(s)	60, 125
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	3 cut(s)	43, 79, 220
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	3 cut(s)	40, 173, 178
BstACI	GRCGYC	1 cut(s)	393
BstBI	TTCGAA	2 cut(s)	60, 125
BstC8I	GCNNGC	2 cut(s)	145, 279
BstDEI	CTNAG	4 cut(s)	187, 202, 273, 425
BstF5I	GGATG	2 cut(s)	346, 486
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	3 cut(s)	46, 82, 223
BstMBI	GATC	3 cut(s)	43, 79, 220
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 287, 421
BstNI	CCWGG	1 cut(s)	457
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	455
BstV1I	GCAGC	4 cut(s)	3, 168, 256, 302
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	346, 486
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	145, 279
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	1 cut(s)	415
CseI	GACGC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	3 cut(s)	278, 397, 447
CviJI	RGCY	5 cut(s)	16, 130, 147, 191, 269
CviKI_1	RGCY	5 cut(s)	16, 130, 147, 191, 269
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	4 cut(s)	187, 202, 273, 425
DpnI	GATC	3 cut(s)	45, 81, 222
DpnII	GATC	3 cut(s)	43, 79, 220
Eco130I	CCWWGG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	455
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	3 cut(s)	281, 400, 450
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	3 cut(s)	277, 396, 446
FauI	CCCGC	1 cut(s)	401
FblI	GTMKAC	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	17, 182, 270, 291
FokI	GGATG	2 cut(s)	353, 493
Fsp4HI	GCNGC	4 cut(s)	17, 182, 270, 291
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	4 cut(s)	17, 182, 270, 291
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	147
HgaI	GACGC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	415
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	3 cut(s)	281, 400, 450
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HinfI	GANTC	2 cut(s)	52, 486
HphI	GGTGA	2 cut(s)	101, 147
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	4 cut(s)	28, 51, 166, 328
Hpy188III	TCNNGA	1 cut(s)	397
Hpy8I	GTNNAC	1 cut(s)	299
Hpy99I	CGWCG	1 cut(s)	24
HpyCH4III	ACNGT	3 cut(s)	40, 173, 178
HpyCH4IV	ACGT	2 cut(s)	64, 393
HpyCH4V	TGCA	2 cut(s)	184, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 287, 421
HpyF3I	CTNAG	4 cut(s)	187, 202, 273, 425
HpySE526I	ACGT	2 cut(s)	64, 393
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	281, 400, 450
HspAI	GCGC	1 cut(s)	413
Kzo9I	GATC	3 cut(s)	43, 79, 220
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	5 cut(s)	129, 131, 321, 442, 469
Lsp1109I	GCAGC	4 cut(s)	3, 168, 256, 302
MaeII	ACGT	2 cut(s)	64, 393
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	3 cut(s)	45, 81, 222
MboI	GATC	3 cut(s)	43, 79, 220
MboII	GAAGA	2 cut(s)	38, 98
MluCI	AATT	1 cut(s)	56
MnlI	CCTC	5 cut(s)	4, 133, 163, 169, 259
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	457
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	3 cut(s)	278, 287, 421
NdeII	GATC	3 cut(s)	43, 79, 220
NlaIII	CATG	3 cut(s)	281, 400, 450
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	389
NspI	RCATGY	1 cut(s)	281
NspV	TTCGAA	2 cut(s)	60, 125
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	396
PctI	GAATGC	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	52, 486
PfoI	TCCNGGA	1 cut(s)	455
PkrI	GCNGC	4 cut(s)	18, 183, 271, 292
Psp6I	CCWGG	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	4 cut(s)	17, 182, 270, 291
Sau3AI	GATC	3 cut(s)	43, 79, 220
ScrFI	CCNGG	1 cut(s)	457
SetI	ASST	6 cut(s)	18, 67, 132, 193, 396, 501
SfuI	TTCGAA	2 cut(s)	60, 125
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	3 cut(s)	32, 408, 478
StyD4I	CCNGG	1 cut(s)	455
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	40, 173, 178
TaiI	ACGT	2 cut(s)	67, 396
TaqI	TCGA	2 cut(s)	60, 125
TasI	AATT	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	52, 486
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	4 cut(s)	16, 181, 269, 290
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	2 cut(s)	108, 413
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	448
XceI	RCATGY	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	56
ZraI	GACGTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.