Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Reverse (-)

1350529 .. 1354297

Gene Structure 3769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG021200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGCAAGTGGCTTATGGTTTGTGTTTTGCACTTGAACTCAGTGATGAGATTGGATTTGTTCATCCATCCCTGTTTGTCAACTTGAATGAAGAGGCATCCTCATCATCTGATGGTATTAGTAATGTGGTGTGCTCAGCAGATGGGAGTGCAGTGTTTTGGAATAGGGATCATAAGTTGGGAATTTCGACGGATGTTCTTATTCCATTATATAAGGAAGCTAAGCGCGCGCTGATGGCAGCAAATCGACAATATAAGGGACTTTGTAGCACATCTGATATAACTGGGGTTGAGAGTTCTGTATGTGACTCATTGTTGTTGGGTAACGGTGTTGAAAGTGAAGTCATGAAGCATAGCAGGGCTGTTTTGGTAGTGAGTTCTGATTTTGGCACTGCTTGGCATTCCAGGAAGATGGTGTTGTTAAAGAAGCAAGAGCTCTCAATATTATTGGATGAACTTCTATTCTCAGCTCTTGTTCTTTCATATGCACCTAAATCTGAGCATGCTTGGAGCCACAGGCGATGGGTCATCAAGTTAATTGCTGGAAAGTGTTCAACTCTGCAAGAGATTGTCACCAAAGAGTCTGAGCTGGTGGAGAAAATAGCTGAGAGGTCAAAAATGAATTACCGCGCATGGTATCATCGTTGCTGGTTGGTGACCTACATGACAACAGAGCTGTCTCTACATGAATTAAAGAGATCTAAAAACTGGGCGGGCTTGCATGTTGCTGACCATAGTTGCTTCCATTATCGCAGACAGCTAATGCTTAGGATTTTAGAGGACAGATGCTGTAAACAAGAAAATGAATCTTCTAGTTATAGTGTTAAAATAAATCAATTATGGAAGGAGGAGCTTGATTGGAATGAAATGTTGATAAAGCGCTACATAGGAAGAGAGGCTCTATGGCTTCATCGGCGCTTCCTATCCTTATTTTGGATAAAACATTTTTTAACTGGTCAGACCAGTCTGCCTGGGGATTGGAAGCACAAAACCAGCATGAATAATGACTTTGGTATCTTTGTGGATAATGAGTTACATCTCCTGCAGTCCTGCTCCATCATTCCAGATGATAGTTTTGATGATTACCAAGCACAGGCTACATATTCTGCTACTTACATGTTATGGTTGATTAAGGTAGTAATTTTGCAATATATAATAACTTGTAACCAATTCTCTTTGATCAGATTGTCCGGATGCTTATTTTACTCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

403

Amino Acids

46.47

Weight (kDa)

6.94

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPTA	PF01239	149 - 177	1.3e-06	Protein prenyltransferase alpha subunit repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	225, 227, 627
AccIII	TCCGGA	1 cut(s)	1187
AciI	CCGC	2 cut(s)	625, 710
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	180
AfeI	AGCGCT	1 cut(s)	878
AfiI	CCNNNNNNNGG	2 cut(s)	930, 1090
AflIII	ACRYGT	1 cut(s)	1113
AgsI	TTSAA	4 cut(s)	35, 85, 332, 552
AjnI	CCWGG	2 cut(s)	401, 967
AluBI	AGCT	8 cut(s)	218, 433, 467, 586, 602, 673, 757, 850
AluI	AGCT	8 cut(s)	218, 433, 467, 586, 602, 673, 757, 850
Alw21I	GWGCWC	2 cut(s)	134, 435
Alw26I	GTCTC	1 cut(s)	681
AlwI	GGATC	1 cut(s)	174
AlwNI	CAGNNNCTG	1 cut(s)	786
Aor13HI	TCCGGA	1 cut(s)	1187
Aor51HI	AGCGCT	1 cut(s)	878
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	547
AspLEI	GCGC	6 cut(s)	225, 227, 229, 629, 879, 915
AsuHPI	GGTGA	2 cut(s)	562, 664
BaeI	ACNNNNGTAYC	2 cut(s)	994, 1027
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	2 cut(s)	134, 435
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	7 cut(s)	73, 104, 134, 226, 403, 513, 1061
BciT130I	CCWGG	2 cut(s)	403, 969
BclI	TGATCA	1 cut(s)	1176
BcoDI	GTCTC	1 cut(s)	681
BfaI	CTAG	1 cut(s)	810
BfmI	CTRYAG	1 cut(s)	1040
BfoI	RGCGCY	2 cut(s)	880, 916
BglII	AGATCT	1 cut(s)	695
BisI	GCNGC	1 cut(s)	237
BlpI	GCTNAGC	2 cut(s)	133, 219
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	2 cut(s)	403, 969
BmiI	GGNNCC	1 cut(s)	509
BmrFI	CCNGG	2 cut(s)	403, 969
BmrI	ACTGGG	2 cut(s)	291, 715
BmsI	GCATC	3 cut(s)	104, 773, 1181
BmuI	ACTGGG	2 cut(s)	291, 715
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu10I	CCTNAGC	1 cut(s)	764
Bpu1102I	GCTNAGC	2 cut(s)	133, 219
BsaJI	CCNNGG	1 cut(s)	968
BsaWI	WCCGGW	1 cut(s)	1187
Bsc4I	CCNNNNNNNGG	2 cut(s)	930, 1090
Bse1I	ACTGG	4 cut(s)	286, 710, 955, 960
BseAI	TCCGGA	1 cut(s)	1187
BseBI	CCWGG	2 cut(s)	403, 969
BseDI	CCNNGG	1 cut(s)	968
BseGI	GGATG	6 cut(s)	61, 65, 95, 196, 454, 1196
BseLI	CCNNNNNNNGG	2 cut(s)	930, 1090
BseMII	CTCAG	6 cut(s)	52, 147, 477, 486, 573, 594
BseNI	ACTGG	4 cut(s)	286, 710, 955, 960
BsePI	GCGCGC	2 cut(s)	223, 225
BseRI	GAGGAG	1 cut(s)	860
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	168
Bsh1236I	CGCG	3 cut(s)	225, 227, 627
BsiHKAI	GWGCWC	2 cut(s)	134, 435
BsiSI	CCGG	1 cut(s)	1188
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	930, 1090
BsmAI	GTCTC	1 cut(s)	681
BsmFI	GGGAC	1 cut(s)	270
BsmI	GAATGC	1 cut(s)	397
Bsp1286I	GDGCHC	2 cut(s)	134, 435
Bsp13I	TCCGGA	1 cut(s)	1187
Bsp143I	GATC	3 cut(s)	166, 695, 1176
Bsp1720I	GCTNAGC	2 cut(s)	133, 219
BspACI	CCGC	2 cut(s)	625, 710
BspCNI	CTCAG	6 cut(s)	51, 146, 476, 487, 574, 595
BspEI	TCCGGA	1 cut(s)	1187
BspFNI	CGCG	3 cut(s)	225, 227, 627
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	509
BspMAI	CTGCAG	1 cut(s)	1044
BspPI	GGATC	1 cut(s)	174
BsrI	ACTGG	4 cut(s)	286, 710, 955, 960
BssECI	CCNNGG	1 cut(s)	968
BssHII	GCGCGC	2 cut(s)	223, 225
BssMI	GATC	3 cut(s)	166, 695, 1176
Bst2UI	CCWGG	2 cut(s)	403, 969
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	2 cut(s)	84, 883
BstC8I	GCNNGC	5 cut(s)	225, 227, 501, 712, 716
BstDEI	CTNAG	8 cut(s)	38, 133, 219, 463, 495, 582, 603, 764
BstEII	GGTNACC	1 cut(s)	652
BstF5I	GGATG	6 cut(s)	61, 65, 95, 196, 454, 1196
BstFNI	CGCG	3 cut(s)	225, 227, 627
BstH2I	RGCGCY	2 cut(s)	880, 916
BstHHI	GCGC	6 cut(s)	225, 227, 229, 629, 879, 915
BstKTI	GATC	3 cut(s)	169, 698, 1179
BstMAI	GTCTC	1 cut(s)	681
BstMBI	GATC	3 cut(s)	166, 695, 1176
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 233, 910
BstNI	CCWGG	2 cut(s)	403, 969
BstNSI	RCATGY	3 cut(s)	503, 722, 1117
BstPI	GGTNACC	1 cut(s)	652
BstSCI	CCNGG	2 cut(s)	401, 967
BstSFI	CTRYAG	1 cut(s)	1040
BstUI	CGCG	3 cut(s)	225, 227, 627
BstV1I	GCAGC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	695
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	695
BtgZI	GCGATG	1 cut(s)	532
BtsCI	GGATG	6 cut(s)	61, 65, 95, 196, 454, 1196
BtsI	GCAGTG	2 cut(s)	156, 387
BtsIMutI	CAGTG	3 cut(s)	46, 156, 387
Cac8I	GCNNGC	5 cut(s)	225, 227, 501, 712, 716
CaiI	CAGNNNCTG	1 cut(s)	786
CciI	TCATGA	1 cut(s)	342
CfoI	GCGC	6 cut(s)	225, 227, 229, 629, 879, 915
CviAII	CATG	8 cut(s)	343, 500, 630, 661, 683, 719, 994, 1114
DdeI	CTNAG	8 cut(s)	38, 133, 219, 463, 495, 582, 603, 764
DpnI	GATC	3 cut(s)	168, 697, 1178
DpnII	GATC	3 cut(s)	166, 695, 1176
Eam1104I	CTCTTC	2 cut(s)	84, 883
EarI	CTCTTC	2 cut(s)	84, 883
Ecl136II	GAGCTC	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	435
Eco47III	AGCGCT	1 cut(s)	878
Eco53kI	GAGCTC	1 cut(s)	433
Eco91I	GGTNACC	1 cut(s)	652
EcoICRI	GAGCTC	1 cut(s)	433
EcoO65I	GGTNACC	1 cut(s)	652
EcoRII	CCWGG	2 cut(s)	401, 967
EcoT38I	GRGCYC	1 cut(s)	435
FaeI	CATG	8 cut(s)	346, 503, 633, 664, 686, 722, 997, 1117
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	8 cut(s)	342, 499, 629, 660, 682, 718, 993, 1113
FauI	CCCGC	1 cut(s)	703
FauNDI	CATATG	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	1176
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	6 cut(s)	48, 52, 82, 203, 461, 1203
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	810
GlaI	GCGC	6 cut(s)	224, 226, 228, 628, 878, 914
GluI	GCNGC	1 cut(s)	237
HaeII	RGCGCY	2 cut(s)	880, 916
HapII	CCGG	1 cut(s)	1188
HhaI	GCGC	6 cut(s)	225, 227, 229, 629, 879, 915
Hin1II	CATG	8 cut(s)	346, 503, 633, 664, 686, 722, 997, 1117
Hin6I	GCGC	6 cut(s)	223, 225, 227, 627, 877, 913
HinP1I	GCGC	6 cut(s)	223, 225, 227, 627, 877, 913
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	305, 578, 803
HpaII	CCGG	1 cut(s)	1188
HphI	GGTGA	2 cut(s)	562, 664
Hpy166II	GTNNAC	2 cut(s)	79, 791
Hpy188I	TCNGA	7 cut(s)	109, 274, 379, 496, 583, 957, 1181
Hpy188III	TCNNGA	3 cut(s)	343, 1061, 1188
Hpy8I	GTNNAC	2 cut(s)	79, 791
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	835
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	8 cut(s)	4, 29, 149, 485, 559, 718, 1042, 1144
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 233, 910
HpyF3I	CTNAG	8 cut(s)	38, 133, 219, 463, 495, 582, 603, 764
Hsp92II	CATG	8 cut(s)	346, 503, 633, 664, 686, 722, 997, 1117
HspAI	GCGC	6 cut(s)	223, 225, 227, 627, 877, 913
Kpn2I	TCCGGA	1 cut(s)	1187
Ksp22I	TGATCA	1 cut(s)	1176
Kzo9I	GATC	3 cut(s)	166, 695, 1176
LmnI	GCTCC	3 cut(s)	507, 847, 1055
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	3 cut(s)	104, 773, 1181
MaeI	CTAG	1 cut(s)	810
MaeIII	GTNAC	6 cut(s)	302, 320, 568, 652, 1029, 1160
MalI	GATC	3 cut(s)	168, 697, 1178
MboI	GATC	3 cut(s)	166, 695, 1176
MboII	GAAGA	4 cut(s)	101, 418, 798, 900
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	2 cut(s)	134, 435
MluCI	AATT	7 cut(s)	180, 534, 619, 686, 833, 1137, 1166
MlyI	GAGTC	2 cut(s)	299, 587
MnlI	CCTC	6 cut(s)	85, 109, 600, 769, 838, 886
MroI	TCCGGA	1 cut(s)	1187
MroXI	GAANNNNTTC	1 cut(s)	547
MseI	TTAA	6 cut(s)	419, 533, 689, 822, 947, 1128
MspI	CCGG	1 cut(s)	1188
MspR9I	CCNGG	2 cut(s)	403, 969
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	2 cut(s)	403, 969
MvnI	CGCG	3 cut(s)	225, 227, 627
MwoI	GCNNNNNNNGC	3 cut(s)	224, 233, 910
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	3 cut(s)	166, 695, 1176
NlaIII	CATG	8 cut(s)	346, 503, 633, 664, 686, 722, 997, 1117
NlaIV	GGNNCC	1 cut(s)	509
NmuCI	GTSAC	3 cut(s)	302, 568, 652
NspI	RCATGY	3 cut(s)	503, 722, 1117
PaeI	GCATGC	1 cut(s)	503
PagI	TCATGA	1 cut(s)	342
PauI	GCGCGC	2 cut(s)	223, 225
PciI	ACATGT	1 cut(s)	1113
PctI	GAATGC	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	803
PfoI	TCCNGGA	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	2 cut(s)	299, 586
PpsI	GAGTC	2 cut(s)	299, 586
PscI	ACATGT	1 cut(s)	1113
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	401, 967
PspEI	GGTNACC	1 cut(s)	652
PspGI	CCWGG	2 cut(s)	401, 967
PspN4I	GGNNCC	1 cut(s)	509
PstI	CTGCAG	1 cut(s)	1044
PstNI	CAGNNNCTG	1 cut(s)	786
PsuI	RGATCY	1 cut(s)	695
PteI	GCGCGC	2 cut(s)	223, 225
SacI	GAGCTC	1 cut(s)	435
SaqAI	TTAA	6 cut(s)	419, 533, 689, 822, 947, 1128
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	3 cut(s)	166, 695, 1176
SchI	GAGTC	2 cut(s)	299, 587
ScrFI	CCNGG	2 cut(s)	403, 969
SduI	GDGCHC	2 cut(s)	134, 435
SfaNI	GCATC	3 cut(s)	104, 773, 1181
SfcI	CTRYAG	1 cut(s)	1040
SphI	GCATGC	1 cut(s)	503
Sse9I	AATT	7 cut(s)	180, 534, 619, 686, 833, 1137, 1166
SsiI	CCGC	2 cut(s)	625, 710
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	1 cut(s)	810
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	401, 967
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	2 cut(s)	185, 244
TasI	AATT	7 cut(s)	180, 534, 619, 686, 833, 1137, 1166
TfiI	GAWTC	1 cut(s)	803
Tru1I	TTAA	6 cut(s)	419, 533, 689, 822, 947, 1128
Tru9I	TTAA	6 cut(s)	419, 533, 689, 822, 947, 1128
TscAI	CASTG	3 cut(s)	46, 156, 394
TseFI	GTSAC	3 cut(s)	302, 568, 652
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	3 cut(s)	302, 568, 652
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	3 cut(s)	46, 156, 394
XapI	RAATTY	1 cut(s)	180
XceI	RCATGY	3 cut(s)	503, 722, 1117
XmnI	GAANNNNTTC	1 cut(s)	547
XspI	CTAG	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.