Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8329731.1

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 744

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8329731.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 566 bp

agtctagtttggagggtttagggtttttgattgatgcttttggagaatgtggttatacttatggattgtgttttgcacttgaactcagtgatgagattggatttgttcatccatccctgtttgtcaacttgaatgaagaggcatcctcatcatctgatggtattagtaatgtggtgtgctcagcagatgggagtgcagtgttttggaatagggatcataagttgggaatttcgacggatgttcttattccattatataaggaagctaagcgcgcgctgatggcagcaaatcgacaatataagggagtttgtagcacatctgatataactggggttgagagttctgtatgtgactcattatcgttgggtaacggtgttgaaagtgaagtcatgaagcatagcagggctgttttgttagtgagttctgattttggcactgcttggaattccaggaagatggtgttgttaaagaagcaagagctctcaatattattggatgaacttctattctcagctcttgttctttcatatgcacctaaatctgagcatgcttggagccacaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

187

Amino Acids

20.28

Weight (kDa)

5.05

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	272, 274
AclWI	GGATC	1 cut(s)	221
AcsI	RAATTY	2 cut(s)	227, 444
AgsI	TTSAA	3 cut(s)	82, 132, 379
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	3 cut(s)	265, 480, 514
AluI	AGCT	3 cut(s)	265, 480, 514
Alw21I	GWGCWC	2 cut(s)	181, 482
AlwI	GGATC	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	2 cut(s)	227, 444
AspLEI	GCGC	3 cut(s)	272, 274, 276
BanII	GRGCYC	1 cut(s)	482
Bbv12I	GWGCWC	2 cut(s)	181, 482
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	5 cut(s)	120, 151, 181, 273, 450
BciT130I	CCWGG	1 cut(s)	450
BfaI	CTAG	1 cut(s)	5
BisI	GCNGC	1 cut(s)	284
BlpI	GCTNAGC	2 cut(s)	180, 266
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	450
BmiI	GGNNCC	1 cut(s)	556
BmrFI	CCNGG	1 cut(s)	450
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	2 cut(s)	24, 151
BmuI	ACTGGG	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
Bpu1102I	GCTNAGC	2 cut(s)	180, 266
Bse1I	ACTGG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	450
BseGI	GGATG	5 cut(s)	108, 112, 142, 243, 501
BseMII	CTCAG	4 cut(s)	99, 194, 524, 533
BseNI	ACTGG	1 cut(s)	333
BsePI	GCGCGC	2 cut(s)	270, 272
BseXI	GCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	2 cut(s)	272, 274
BsiHKAI	GWGCWC	2 cut(s)	181, 482
Bsp1286I	GDGCHC	2 cut(s)	181, 482
Bsp143I	GATC	1 cut(s)	213
Bsp1720I	GCTNAGC	2 cut(s)	180, 266
BspCNI	CTCAG	4 cut(s)	98, 193, 523, 534
BspFNI	CGCG	2 cut(s)	272, 274
BspHI	TCATGA	1 cut(s)	389
BspLI	GGNNCC	1 cut(s)	556
BspPI	GGATC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	333
BssHII	GCGCGC	2 cut(s)	270, 272
BssMI	GATC	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	272, 274, 548
BstDEI	CTNAG	5 cut(s)	85, 180, 266, 510, 542
BstF5I	GGATG	5 cut(s)	108, 112, 142, 243, 501
BstFNI	CGCG	2 cut(s)	272, 274
BstHHI	GCGC	3 cut(s)	272, 274, 276
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 280
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	448
BstUI	CGCG	2 cut(s)	272, 274
BstV1I	GCAGC	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	456
BtsCI	GGATG	5 cut(s)	108, 112, 142, 243, 501
BtsI	GCAGTG	2 cut(s)	203, 434
BtsIMutI	CAGTG	3 cut(s)	93, 203, 434
Cac8I	GCNNGC	3 cut(s)	272, 274, 548
CciI	TCATGA	1 cut(s)	389
CfoI	GCGC	3 cut(s)	272, 274, 276
CviAII	CATG	2 cut(s)	390, 547
CviJI	RGCY	5 cut(s)	265, 406, 480, 514, 557
CviKI_1	RGCY	5 cut(s)	265, 406, 480, 514, 557
DdeI	CTNAG	5 cut(s)	85, 180, 266, 510, 542
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	482
Eco53kI	GAGCTC	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	480
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	482
FaeI	CATG	2 cut(s)	393, 550
FatI	CATG	2 cut(s)	389, 546
FauNDI	CATATG	1 cut(s)	528
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	5 cut(s)	95, 99, 129, 250, 508
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	3 cut(s)	271, 273, 275
GluI	GCNGC	1 cut(s)	284
HhaI	GCGC	3 cut(s)	272, 274, 276
Hin1II	CATG	2 cut(s)	393, 550
Hin6I	GCGC	3 cut(s)	270, 272, 274
HinP1I	GCGC	3 cut(s)	270, 272, 274
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	4 cut(s)	156, 321, 426, 543
Hpy188III	TCNNGA	1 cut(s)	390
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	1 cut(s)	237
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	3 cut(s)	76, 196, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 280
HpyF3I	CTNAG	5 cut(s)	85, 180, 266, 510, 542
Hsp92II	CATG	2 cut(s)	393, 550
HspAI	GCGC	3 cut(s)	270, 272, 274
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	554
LpnPI	CCDG	6 cut(s)	130, 314, 387, 435, 462, 546
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	2 cut(s)	24, 151
MaeI	CTAG	1 cut(s)	5
MaeIII	GTNAC	2 cut(s)	349, 367
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	2 cut(s)	148, 465
MhlI	GDGCHC	2 cut(s)	181, 482
MluCI	AATT	2 cut(s)	227, 444
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	3 cut(s)	6, 132, 156
MseI	TTAA	1 cut(s)	466
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	2 cut(s)	272, 274
MwoI	GCNNNNNNNGC	2 cut(s)	271, 280
NdeI	CATATG	1 cut(s)	528
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	2 cut(s)	393, 550
NlaIV	GGNNCC	1 cut(s)	556
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	550
PaeI	GCATGC	1 cut(s)	550
PagI	TCATGA	1 cut(s)	389
PauI	GCGCGC	2 cut(s)	270, 272
PfoI	TCCNGGA	1 cut(s)	448
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	556
PteI	GCGCGC	2 cut(s)	270, 272
SacI	GAGCTC	1 cut(s)	482
SaqAI	TTAA	1 cut(s)	466
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	2 cut(s)	181, 482
SetI	ASST	5 cut(s)	267, 482, 516, 537, 565
SfaNI	GCATC	2 cut(s)	24, 151
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	2 cut(s)	227, 444
SspI	AATATT	1 cut(s)	488
SspMI	CTAG	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	373
TaqI	TCGA	2 cut(s)	232, 291
TasI	AATT	2 cut(s)	227, 444
Tru1I	TTAA	1 cut(s)	466
Tru9I	TTAA	1 cut(s)	466
TscAI	CASTG	3 cut(s)	93, 203, 441
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	5 cut(s)	97, 149, 406, 512, 515
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	3 cut(s)	93, 203, 441
XapI	RAATTY	2 cut(s)	227, 444
XceI	RCATGY	1 cut(s)	550
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.