MD04G1230400.v1.1

Protein prenyltransferase alpha subunit repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
31044394 .. 31047884
3491 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1230400.v1.1.491

Sequence Viewer

Length: 1323 bp
ATGAACGAAGAGGAGCTGCGTCGTTCGGAAGCAACCATGGCCGATCTTCTGAATCAATTCGAACGTATCTTGGAATCCGATCCCCAAATAGATGAGGTGGGATTTCTTCACCCGTCCCAGTTTTCCGAGCTGAATAAAGAGGCAGGCCATTCACCCTCATTTGATGACAGTACTGTGCTGCGCTCGGCAGATGGAAACTCAGTTTTTTGGAATAGGGATCATAAGTTGGGGATTTCAACGCAAATTCTTCTTCCATTATATAAGACAGCTAAGCATGCGTTTATGGCAGCAAGTAGACAATATAAGGCACTTAACAGCAAATCTGATGTATCCGGGGATGAGAATTCTCTGTGTGCGTCATTATCTTTGGATAACAGTTTCGAAGGTGACGTCATGAAGCATAGCAGGGCACTTTTGTTGCTAAGTTGTGATTTCGGCACTGCATGGCATTCCAGGAAACTTGTTGTGTCGCATAAGCATAAGCTCTCGGATTTTTTGGATGAACTTCTCTTGTCGGCACTTGTTCTTTCATATTCACCTAAGTCTGAGTATGCTTGGAGCCATAGGCAGTGGATCATCAAGTCAATTGCTGGAAAGTGTTCAACTCTGTCAGAGATTGTGACCAAAGACTCTGAGCTGGTGGAGAAAATAGCTGAGAGGTCAAAAATGAATTACCGTGCTTGGAATCATCGTTGCTGGTTGGTTACCTACATGACAAGAGAACAGTTGTTATATGAATTAAAAAGATCCAGAAACTGGGCCTCCTTGCATGTTGCTGATCATAGTTGCTTCCATTATCGCAGTCGGCTGATGCTTAAGATTTTAGAAGAGCAATGCTATAAACAAGAAATTTCATCTTCTGGTTACAGCGTTGAGACATATCAATTGTGGAAGGAAGAGCTTGATTGGGATGAAATGTTGATAAAGCGCTACATAGGAAGAGAGGCTCTATGGCTTCATCGTCGCTTCCTTTCCTTATTTTGGATAAAGCATTTCATAACCAATCATACTGGTGTGTCCAGCCACGGGAAGCAGAATAACAGCATGAATAACGACTTCAGAATATTTATGGATAACGAGCTACATCTCCTCGACTCCTGCTCAATCATTCCAGATAATAGCTTTGACGATTACCAATCACAGGCTAAACATTCTGCCACTTACATATTATGGTTGATTAAGCAAATCCCTGATTCCCGACGGATTGAATTTCAAGAGAAGCTGAAAACCGAAAACCTAAAAGCTCTGTTGAATAAGGCGTGCCCGGAGAGGTCCTCAACTTGGGATTCTTTAGTGAGCTATGTAGAAGCAGCTGGACATTAG

Protein Analysis

441

Amino Acids

51.21

Weight (kDa)

6.47

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
AccB7I CCANNNNNTGG 1 cut(s) 756
AccI GTMKAC 1 cut(s) 295
AclWI GGATC 4 cut(s) 74, 225, 581, 741
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 4 cut(s) 243, 343, 849, 1208
AcuI CTGAAG 1 cut(s) 1042
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 1 cut(s) 172
AfeI AGCGCT 1 cut(s) 929
AfiI CCNNNNNNNGG 5 cut(s) 756, 981, 1026, 1141, 1281
AflII CTTAAG 1 cut(s) 815
AgsI TTSAA 5 cut(s) 237, 603, 1208, 1214, 1252
AjnI CCWGG 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 869
AlwI GGATC 4 cut(s) 74, 225, 581, 741
AlwNI CAGNNNCTG 1 cut(s) 756
Aor51HI AGCGCT 1 cut(s) 929
AoxI GGCC 3 cut(s) 39, 145, 759
ApeKI GCWGC 4 cut(s) 16, 178, 287, 1310
ApoI RAATTY 4 cut(s) 243, 343, 849, 1208
ArsI GACNNNNNNTTYG 2 cut(s) 375, 407
Asp700I GAANNNNTTC 2 cut(s) 56, 598
AspLEI GCGC 2 cut(s) 183, 930
AspS9I GGNCC 2 cut(s) 759, 1272
AsuC2I CCSGG 2 cut(s) 334, 1265
AsuHPI GGTGA 4 cut(s) 101, 144, 398, 528
AsuII TTCGAA 2 cut(s) 60, 381
AvaII GGWCC 1 cut(s) 1272
BaeGI GKGCMC 2 cut(s) 412, 1265
BbvI GCAGC 3 cut(s) 3, 165, 299
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 454
BciVI GTATCC 1 cut(s) 340
BclI TGATCA 1 cut(s) 778
BcnI CCSGG 2 cut(s) 334, 1265
BcoDI GTCTC 1 cut(s) 869
BfoI RGCGCY 1 cut(s) 931
BfrI CTTAAG 1 cut(s) 815
BfuI GTATCC 1 cut(s) 340
BisI GCNGC 4 cut(s) 17, 179, 288, 1311
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 4 cut(s) 18, 180, 289, 1312
BmcAI AGTACT 1 cut(s) 172
Bme1390I CCNGG 3 cut(s) 334, 454, 1265
Bme18I GGWCC 1 cut(s) 1272
BmgT120I GGNCC 2 cut(s) 759, 1272
BmiI GGNNCC 1 cut(s) 560
BmrFI CCNGG 3 cut(s) 334, 454, 1265
BmrI ACTGGG 2 cut(s) 112, 766
BmsI GCATC 1 cut(s) 801
BmuI ACTGGG 2 cut(s) 112, 766
BplI GAGNNNNNCTC 2 cut(s) 1259, 1291
Bpu1102I GCTNAGC 1 cut(s) 270
Bpu14I TTCGAA 2 cut(s) 60, 381
BpuMI CCSGG 2 cut(s) 334, 1265
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 3 cut(s) 36, 333, 1024
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 5 cut(s) 756, 981, 1026, 1141, 1281
Bse1I ACTGG 3 cut(s) 118, 761, 1015
Bse3DI GCAATG 1 cut(s) 839
BseBI CCWGG 1 cut(s) 454
BseDI CCNNGG 3 cut(s) 36, 333, 1024
BseGI GGATG 3 cut(s) 343, 505, 916
BseLI CCNNNNNNNGG 5 cut(s) 756, 981, 1026, 1141, 1281
BseMI GCAATG 1 cut(s) 839
BseMII CTCAG 4 cut(s) 213, 537, 624, 645
BseNI ACTGG 3 cut(s) 118, 761, 1015
BseRI GAGGAG 2 cut(s) 26, 1079
BseSI GKGCMC 2 cut(s) 412, 1265
BseXI GCAGC 3 cut(s) 3, 165, 299
BshFI GGCC 3 cut(s) 41, 147, 761
BsiSI CCGG 2 cut(s) 333, 1265
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 5 cut(s) 756, 981, 1026, 1141, 1281
BsmAI GTCTC 1 cut(s) 869
BsmFI GGGAC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 3 cut(s) 41, 147, 761
Bsp119I TTCGAA 2 cut(s) 60, 381
Bsp1286I GDGCHC 2 cut(s) 412, 1265
Bsp143I GATC 6 cut(s) 43, 79, 217, 573, 746, 778
Bsp1720I GCTNAGC 1 cut(s) 270
Bsp19I CCATGG 1 cut(s) 36
BspANI GGCC 3 cut(s) 41, 147, 761
BspCNI CTCAG 4 cut(s) 212, 538, 625, 646
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 560
BspPI GGATC 4 cut(s) 74, 225, 581, 741
BspQI GCTCTTC 2 cut(s) 822, 891
BspT104I TTCGAA 2 cut(s) 60, 381
BspTI CTTAAG 1 cut(s) 815
BsrDI GCAATG 1 cut(s) 839
BsrI ACTGG 3 cut(s) 118, 761, 1015
BssECI CCNNGG 3 cut(s) 36, 333, 1024
BssMI GATC 6 cut(s) 43, 79, 217, 573, 746, 778
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 454
Bst4CI ACNGT 5 cut(s) 170, 175, 377, 677, 726
Bst6I CTCTTC 4 cut(s) 3, 822, 891, 934
BstACI GRCGYC 1 cut(s) 390
BstAFI CTTAAG 1 cut(s) 815
BstBI TTCGAA 2 cut(s) 60, 381
BstC8I GCNNGC 3 cut(s) 145, 276, 1261
BstDEI CTNAG 7 cut(s) 199, 270, 422, 540, 546, 633, 654
BstDSI CCRYGG 2 cut(s) 36, 1024
BstEII GGTNACC 1 cut(s) 703
BstF5I GGATG 3 cut(s) 343, 505, 916
BstH2I RGCGCY 1 cut(s) 931
BstHHI GCGC 2 cut(s) 183, 930
BstKTI GATC 6 cut(s) 46, 82, 220, 576, 749, 781
BstMAI GTCTC 1 cut(s) 869
BstMBI GATC 6 cut(s) 43, 79, 217, 573, 746, 778
BstMWI GCNNNNNNNGC 3 cut(s) 38, 275, 284
BstNI CCWGG 1 cut(s) 454
BstNSI RCATGY 2 cut(s) 278, 773
BstPI GGTNACC 1 cut(s) 703
BstSCI CCNGG 3 cut(s) 332, 452, 1263
BstSLI GKGCMC 2 cut(s) 412, 1265
BstV1I GCAGC 3 cut(s) 3, 165, 299
BstX2I RGATCY 1 cut(s) 746
BstYI RGATCY 1 cut(s) 746
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 3 cut(s) 41, 147, 761
BtgI CCRYGG 2 cut(s) 36, 1024
BtsCI GGATG 3 cut(s) 343, 505, 916
BtsI GCAGTG 2 cut(s) 438, 575
BtsIMutI CAGTG 2 cut(s) 438, 575
Cac8I GCNNGC 3 cut(s) 145, 276, 1261
CaiI CAGNNNCTG 1 cut(s) 756
CciI TCATGA 1 cut(s) 393
CfoI GCGC 2 cut(s) 183, 930
Cfr13I GGNCC 2 cut(s) 759, 1272
CseI GACGC 2 cut(s) 8, 345
Csp6I GTAC 1 cut(s) 171
CviAII CATG 7 cut(s) 37, 275, 394, 444, 712, 770, 1045
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 7 cut(s) 199, 270, 422, 540, 546, 633, 654
DpnI GATC 6 cut(s) 45, 81, 219, 575, 748, 780
DpnII GATC 6 cut(s) 43, 79, 217, 573, 746, 778
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 4 cut(s) 3, 822, 891, 934
EarI CTCTTC 4 cut(s) 3, 822, 891, 934
Eco130I CCWWGG 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 1272
Eco47III AGCGCT 1 cut(s) 929
Eco57I CTGAAG 1 cut(s) 1042
Eco91I GGTNACC 1 cut(s) 703
EcoO109I RGGNCCY 1 cut(s) 1272
EcoO65I GGTNACC 1 cut(s) 703
EcoRI GAATTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 452
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 7 cut(s) 40, 278, 397, 447, 715, 773, 1048
FaqI GGGAC 1 cut(s) 100
FatI CATG 7 cut(s) 36, 274, 393, 443, 711, 769, 1044
FbaI TGATCA 1 cut(s) 778
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 4 cut(s) 17, 179, 288, 1311
FokI GGATG 3 cut(s) 350, 512, 923
Fsp4HI GCNGC 4 cut(s) 17, 179, 288, 1311
GlaI GCGC 2 cut(s) 182, 929
GluI GCNGC 4 cut(s) 17, 179, 288, 1311
HaeII RGCGCY 1 cut(s) 931
HaeIII GGCC 3 cut(s) 41, 147, 761
HapII CCGG 2 cut(s) 333, 1265
HgaI GACGC 2 cut(s) 8, 345
HhaI GCGC 2 cut(s) 183, 930
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 7 cut(s) 40, 278, 397, 447, 715, 773, 1048
Hin6I GCGC 2 cut(s) 181, 928
HinP1I GCGC 2 cut(s) 181, 928
HinfI GANTC 7 cut(s) 52, 74, 629, 685, 1094, 1193, 1286
HpaII CCGG 2 cut(s) 333, 1265
HphI GGTGA 4 cut(s) 101, 144, 398, 528
Hpy166II GTNNAC 1 cut(s) 296
Hpy188III TCNNGA 5 cut(s) 394, 750, 1112, 1197, 1214
Hpy8I GTNNAC 1 cut(s) 296
Hpy99I CGWCG 3 cut(s) 24, 966, 1203
HpyAV CCTTC 2 cut(s) 377, 886
HpyCH4III ACNGT 5 cut(s) 170, 175, 377, 677, 726
HpyCH4IV ACGT 2 cut(s) 64, 390
HpyCH4V TGCA 2 cut(s) 443, 769
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 275, 284
HpyF3I CTNAG 7 cut(s) 199, 270, 422, 540, 546, 633, 654
HpySE526I ACGT 2 cut(s) 64, 390
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 7 cut(s) 40, 278, 397, 447, 715, 773, 1048
HspAI GCGC 2 cut(s) 181, 928
Ksp22I TGATCA 1 cut(s) 778
Kzo9I GATC 6 cut(s) 43, 79, 217, 573, 746, 778
LguI GCTCTTC 2 cut(s) 822, 891
LmnI GCTCC 2 cut(s) 13, 558
Lsp1109I GCAGC 3 cut(s) 3, 165, 299
LweI GCATC 1 cut(s) 801
MaeII ACGT 2 cut(s) 64, 390
MaeIII GTNAC 4 cut(s) 386, 619, 703, 863
MalI GATC 6 cut(s) 45, 81, 219, 575, 748, 780
MboI GATC 6 cut(s) 43, 79, 217, 573, 746, 778
MboII GAAGA 9 cut(s) 20, 38, 98, 239, 242, 839, 849, 908, 951
MfeI CAATTG 2 cut(s) 585, 884
MflI RGATCY 1 cut(s) 746
MhlI GDGCHC 2 cut(s) 412, 1265
MluCI AATT 9 cut(s) 56, 243, 343, 585, 670, 737, 849, 884, 1208
MlyI GAGTC 2 cut(s) 623, 1088
MroXI GAANNNNTTC 2 cut(s) 56, 598
MseI TTAA 4 cut(s) 312, 740, 816, 1179
MslI CAYNNNNRTG 1 cut(s) 1011
MspA1I CMGCKG 1 cut(s) 1313
MspCI CTTAAG 1 cut(s) 815
MspI CCGG 2 cut(s) 333, 1265
MspR9I CCNGG 3 cut(s) 334, 454, 1265
MunI CAATTG 2 cut(s) 585, 884
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 1 cut(s) 454
MwoI GCNNNNNNNGC 3 cut(s) 38, 275, 284
NciI CCSGG 2 cut(s) 334, 1265
NcoI CCATGG 1 cut(s) 36
NdeII GATC 6 cut(s) 43, 79, 217, 573, 746, 778
NlaIII CATG 7 cut(s) 40, 278, 397, 447, 715, 773, 1048
NlaIV GGNNCC 1 cut(s) 560
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 2 cut(s) 386, 619
NspI RCATGY 2 cut(s) 278, 773
NspV TTCGAA 2 cut(s) 60, 381
PaeI GCATGC 1 cut(s) 278
PagI TCATGA 1 cut(s) 393
PciSI GCTCTTC 2 cut(s) 822, 891
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 2 cut(s) 56, 598
PfeI GAWTC 5 cut(s) 52, 74, 685, 1193, 1286
PflMI CCANNNNNTGG 1 cut(s) 756
PfoI TCCNGGA 1 cut(s) 452
PkrI GCNGC 4 cut(s) 18, 180, 289, 1312
PleI GAGTC 2 cut(s) 623, 1088
PpsI GAGTC 2 cut(s) 623, 1088
PpuMI RGGWCCY 1 cut(s) 1272
Psp5II RGGWCCY 1 cut(s) 1272
Psp6I CCWGG 1 cut(s) 452
PspEI GGTNACC 1 cut(s) 703
PspGI CCWGG 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 560
PspPI GGNCC 2 cut(s) 759, 1272
PspPPI RGGWCCY 1 cut(s) 1272
PstNI CAGNNNCTG 1 cut(s) 756
PsuI RGATCY 1 cut(s) 746
PvuII CAGCTG 1 cut(s) 1313
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 1011
SapI GCTCTTC 2 cut(s) 822, 891
SaqAI TTAA 4 cut(s) 312, 740, 816, 1179
SatI GCNGC 4 cut(s) 17, 179, 288, 1311
Sau3AI GATC 6 cut(s) 43, 79, 217, 573, 746, 778
Sau96I GGNCC 2 cut(s) 759, 1272
ScaI AGTACT 1 cut(s) 172
SchI GAGTC 2 cut(s) 623, 1088
ScrFI CCNGG 3 cut(s) 334, 454, 1265
SduI GDGCHC 2 cut(s) 412, 1265
SfaNI GCATC 1 cut(s) 801
SfuI TTCGAA 2 cut(s) 60, 381
SinI GGWCC 1 cut(s) 1272
SmiMI CAYNNNNRTG 1 cut(s) 1011
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
SphI GCATGC 1 cut(s) 278
Sse9I AATT 9 cut(s) 56, 243, 343, 585, 670, 737, 849, 884, 1208
SspI AATATT 1 cut(s) 1065
StyD4I CCNGG 3 cut(s) 332, 452, 1263
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 5 cut(s) 170, 175, 377, 677, 726
TaiI ACGT 2 cut(s) 67, 393
TaqI TCGA 3 cut(s) 60, 381, 1092
TasI AATT 9 cut(s) 56, 243, 343, 585, 670, 737, 849, 884, 1208
TatI WGTACW 1 cut(s) 170
TfiI GAWTC 5 cut(s) 52, 74, 685, 1193, 1286
Tru1I TTAA 4 cut(s) 312, 740, 816, 1179
Tru9I TTAA 4 cut(s) 312, 740, 816, 1179
TscAI CASTG 2 cut(s) 445, 575
TseFI GTSAC 2 cut(s) 386, 619
TseI GCWGC 4 cut(s) 16, 178, 287, 1310
Tsp45I GTSAC 2 cut(s) 386, 619
TspGWI ACGGA 1 cut(s) 1216
TspRI CASTG 2 cut(s) 445, 575
Van91I CCANNNNNTGG 1 cut(s) 756
Vha464I CTTAAG 1 cut(s) 815
VpaK11BI GGWCC 1 cut(s) 1272
XapI RAATTY 4 cut(s) 243, 343, 849, 1208
XceI RCATGY 2 cut(s) 278, 773
XmiI GTMKAC 1 cut(s) 295
XmnI GAANNNNTTC 2 cut(s) 56, 598
ZraI GACGTC 1 cut(s) 391
ZrmI AGTACT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.