Rh3AG020700

Protein prenyltransferase alpha subunit repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001731
Physical Location & Seq
Reverse (-)
1350529 .. 1354297
3769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG020700.1

Sequence Viewer

Length: 1242 bp
ATGAACGAAGAAGAAAACGCCGGCGAGATTCTGAATAAGTTCGAACAGATTTTGGAGTCCGATCCTGCAATTGATGAGATTGGATTTGTTCATCCATCCCTGTTTGTCAACTTGAATGAAGAGGCATCCTCATCATCTGATGGTATTAGTAATGTGGTGTGCTCAGCAGATGGGAGTGCAGTGTTTTGGAATAGGGATCATAAGTTGGGAATTTCGACGGATGTTCTTATTCCATTATATAAGGAAGCTAAGCGCGCGCTGATGGCAGCAAATCGACAATATAAGGGACTTTGTAGCACATCTGATATAACTGGGGTTGAGAGTTCTGTATGTGACTCATTGTTGTTGGGTAACGGTGTTGAAAGTGAAGTCATGAAGCATAGCAGGGCTGTTTTGGTAGTGAGTTCTGATTTTGGCACTGCTTGGCATTCCAGGAAGATGGTGTTGTTAAAGAAGCAAGAGCTCTCAATATTATTGGATGAACTTCTATTCTCAGCTCTTGTTCTTTCATATGCACCTAAATCTGAGCATGCTTGGAGCCACAGGCGATGGGTCATCAAGTTAATTGCTGGAAAGTGTTCAACTCTGCAAGAGATTGTCACCAAAGAGTCTGAGCTGGTGGAGAAAATAGCTGAGAGGTCAAAAATGAATTACCGCGCATGGTATCATCGTTGCTGGTTGGTGACCTACATGACAACAGAGCTGTCTCTACATGAATTAAAGAGATCTAAAAACTGGGCGGGCTTGCATGTTGCTGACCATAGTTGCTTCCATTATCGCAGACAGCTAATGCTTAGGATTTTAGAGGACAGATGCTGTAAACAAGAAAATGAATCTTCTAGTTATAGTGTTAAAATAAATCAATTATGGAAGGAGGAGCTTGATTGGAATGAAATGTTGATAAAGCGCTACATAGGAAGAGAGGCTCTATGGCTTCATCGGCGCTTCCTATCCTTATTTTGGATAAAACATTTTTTAACTGGTCAGACCAGTCTGCCTGGGGATTGGAAGCACAAAACCAGCATGAATAATGACTTTGGTATCTTTGTGGATAATGAGTTACATCTCCTGCAGTCCTGCTCCATCATTCCAGATGATAGTTTTGATGATTACCAAGCACAGGCTACATATTCTGCTACTTACATGTTATGGTTGATTAAGGTAGTAATTTTGCAATATATAATAACTTGTAACCAATTCTCTTTGATCAGATTGTCCGGATGCTTATTTTACTCTTACTGA

Protein Analysis

413

Amino Acids

47.66

Weight (kDa)

6.22

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPTA PF01239 159 - 187 1.3e-06 Protein prenyltransferase alpha subunit repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 255, 257, 657
AccIII TCCGGA 1 cut(s) 1217
AciI CCGC 2 cut(s) 655, 740
AclWI GGATC 2 cut(s) 56, 204
AcsI RAATTY 1 cut(s) 210
AfeI AGCGCT 1 cut(s) 908
AfiI CCNNNNNNNGG 2 cut(s) 960, 1120
AflIII ACRYGT 1 cut(s) 1143
AgsI TTSAA 3 cut(s) 115, 362, 582
AjnI CCWGG 2 cut(s) 431, 997
AluBI AGCT 8 cut(s) 248, 463, 497, 616, 632, 703, 787, 880
AluI AGCT 8 cut(s) 248, 463, 497, 616, 632, 703, 787, 880
Alw21I GWGCWC 2 cut(s) 164, 465
Alw26I GTCTC 1 cut(s) 711
AlwI GGATC 2 cut(s) 56, 204
AlwNI CAGNNNCTG 1 cut(s) 816
Aor13HI TCCGGA 1 cut(s) 1217
Aor51HI AGCGCT 1 cut(s) 908
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 210
Asp700I GAANNNNTTC 2 cut(s) 38, 577
AspLEI GCGC 6 cut(s) 255, 257, 259, 659, 909, 945
AsuHPI GGTGA 2 cut(s) 592, 694
AsuII TTCGAA 1 cut(s) 42
BaeI ACNNNNGTAYC 2 cut(s) 1024, 1057
BanII GRGCYC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 164, 465
BbvI GCAGC 1 cut(s) 278
BccI CCATC 7 cut(s) 103, 134, 164, 256, 433, 543, 1091
BciT130I CCWGG 2 cut(s) 433, 999
BclI TGATCA 1 cut(s) 1206
BcoDI GTCTC 1 cut(s) 711
BfaI CTAG 1 cut(s) 840
BfmI CTRYAG 1 cut(s) 1070
BfoI RGCGCY 2 cut(s) 910, 946
BglII AGATCT 1 cut(s) 725
BisI GCNGC 1 cut(s) 267
BlpI GCTNAGC 2 cut(s) 163, 249
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 2 cut(s) 433, 999
BmiI GGNNCC 1 cut(s) 539
BmrFI CCNGG 2 cut(s) 433, 999
BmrI ACTGGG 2 cut(s) 321, 745
BmsI GCATC 3 cut(s) 134, 803, 1211
BmuI ACTGGG 2 cut(s) 321, 745
BplI GAGNNNNNCTC 2 cut(s) 113, 145
Bpu10I CCTNAGC 1 cut(s) 794
Bpu1102I GCTNAGC 2 cut(s) 163, 249
Bpu14I TTCGAA 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 998
BsaWI WCCGGW 1 cut(s) 1217
Bsc4I CCNNNNNNNGG 2 cut(s) 960, 1120
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 4 cut(s) 316, 740, 985, 990
BseAI TCCGGA 1 cut(s) 1217
BseBI CCWGG 2 cut(s) 433, 999
BseDI CCNNGG 1 cut(s) 998
BseGI GGATG 6 cut(s) 91, 95, 125, 226, 484, 1226
BseLI CCNNNNNNNGG 2 cut(s) 960, 1120
BseMII CTCAG 5 cut(s) 177, 507, 516, 603, 624
BseNI ACTGG 4 cut(s) 316, 740, 985, 990
BsePI GCGCGC 2 cut(s) 253, 255
BseRI GAGGAG 1 cut(s) 890
BseXI GCAGC 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 198
Bsh1236I CGCG 3 cut(s) 255, 257, 657
BsiHKAI GWGCWC 2 cut(s) 164, 465
BsiSI CCGG 2 cut(s) 21, 1218
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 2 cut(s) 960, 1120
BsmAI GTCTC 1 cut(s) 711
BsmFI GGGAC 1 cut(s) 300
BsmI GAATGC 1 cut(s) 427
Bsp119I TTCGAA 1 cut(s) 42
Bsp1286I GDGCHC 2 cut(s) 164, 465
Bsp13I TCCGGA 1 cut(s) 1217
Bsp143I GATC 4 cut(s) 61, 196, 725, 1206
Bsp1720I GCTNAGC 2 cut(s) 163, 249
BspACI CCGC 2 cut(s) 655, 740
BspCNI CTCAG 5 cut(s) 176, 506, 517, 604, 625
BspEI TCCGGA 1 cut(s) 1217
BspFNI CGCG 3 cut(s) 255, 257, 657
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 539
BspMAI CTGCAG 1 cut(s) 1074
BspPI GGATC 2 cut(s) 56, 204
BspT104I TTCGAA 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 4 cut(s) 316, 740, 985, 990
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 998
BssHII GCGCGC 2 cut(s) 253, 255
BssMI GATC 4 cut(s) 61, 196, 725, 1206
Bst2UI CCWGG 2 cut(s) 433, 999
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 2 cut(s) 114, 913
BstBI TTCGAA 1 cut(s) 42
BstC8I GCNNGC 6 cut(s) 22, 255, 257, 531, 742, 746
BstDEI CTNAG 7 cut(s) 163, 249, 493, 525, 612, 633, 794
BstEII GGTNACC 1 cut(s) 682
BstF5I GGATG 6 cut(s) 91, 95, 125, 226, 484, 1226
BstFNI CGCG 3 cut(s) 255, 257, 657
BstH2I RGCGCY 2 cut(s) 910, 946
BstHHI GCGC 6 cut(s) 255, 257, 259, 659, 909, 945
BstKTI GATC 4 cut(s) 64, 199, 728, 1209
BstMAI GTCTC 1 cut(s) 711
BstMBI GATC 4 cut(s) 61, 196, 725, 1206
BstMWI GCNNNNNNNGC 3 cut(s) 254, 263, 940
BstNI CCWGG 2 cut(s) 433, 999
BstNSI RCATGY 3 cut(s) 533, 752, 1147
BstPI GGTNACC 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 431, 997
BstSFI CTRYAG 1 cut(s) 1070
BstUI CGCG 3 cut(s) 255, 257, 657
BstV1I GCAGC 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 725
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 1 cut(s) 725
BtgZI GCGATG 1 cut(s) 562
BtsCI GGATG 6 cut(s) 91, 95, 125, 226, 484, 1226
BtsI GCAGTG 2 cut(s) 186, 417
BtsIMutI CAGTG 2 cut(s) 186, 417
Cac8I GCNNGC 6 cut(s) 22, 255, 257, 531, 742, 746
CaiI CAGNNNCTG 1 cut(s) 816
CciI TCATGA 1 cut(s) 372
CfoI GCGC 6 cut(s) 255, 257, 259, 659, 909, 945
Cfr10I RCCGGY 1 cut(s) 20
CviAII CATG 8 cut(s) 373, 530, 660, 691, 713, 749, 1024, 1144
DdeI CTNAG 7 cut(s) 163, 249, 493, 525, 612, 633, 794
DpnI GATC 4 cut(s) 63, 198, 727, 1208
DpnII GATC 4 cut(s) 61, 196, 725, 1206
Eam1104I CTCTTC 2 cut(s) 114, 913
EarI CTCTTC 2 cut(s) 114, 913
Ecl136II GAGCTC 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 465
Eco47III AGCGCT 1 cut(s) 908
Eco53kI GAGCTC 1 cut(s) 463
Eco91I GGTNACC 1 cut(s) 682
EcoICRI GAGCTC 1 cut(s) 463
EcoO65I GGTNACC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 431, 997
EcoT38I GRGCYC 1 cut(s) 465
FaeI CATG 8 cut(s) 376, 533, 663, 694, 716, 752, 1027, 1147
FaqI GGGAC 1 cut(s) 300
FatI CATG 8 cut(s) 372, 529, 659, 690, 712, 748, 1023, 1143
FauI CCCGC 1 cut(s) 733
FauNDI CATATG 1 cut(s) 511
FbaI TGATCA 1 cut(s) 1206
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 6 cut(s) 78, 82, 112, 233, 491, 1233
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 1 cut(s) 840
GlaI GCGC 6 cut(s) 254, 256, 258, 658, 908, 944
GluI GCNGC 1 cut(s) 267
HaeII RGCGCY 2 cut(s) 910, 946
HapII CCGG 2 cut(s) 21, 1218
HhaI GCGC 6 cut(s) 255, 257, 259, 659, 909, 945
Hin1II CATG 8 cut(s) 376, 533, 663, 694, 716, 752, 1027, 1147
Hin6I GCGC 6 cut(s) 253, 255, 257, 657, 907, 943
HinP1I GCGC 6 cut(s) 253, 255, 257, 657, 907, 943
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 5 cut(s) 28, 56, 335, 608, 833
HpaII CCGG 2 cut(s) 21, 1218
HphI GGTGA 2 cut(s) 592, 694
Hpy166II GTNNAC 2 cut(s) 109, 821
Hpy188I TCNGA 9 cut(s) 33, 61, 139, 304, 409, 526, 613, 987, 1211
Hpy188III TCNNGA 3 cut(s) 373, 1091, 1218
Hpy8I GTNNAC 2 cut(s) 109, 821
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 865
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 7 cut(s) 68, 179, 515, 589, 748, 1072, 1174
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 263, 940
HpyF3I CTNAG 7 cut(s) 163, 249, 493, 525, 612, 633, 794
Hsp92II CATG 8 cut(s) 376, 533, 663, 694, 716, 752, 1027, 1147
HspAI GCGC 6 cut(s) 253, 255, 257, 657, 907, 943
Kpn2I TCCGGA 1 cut(s) 1217
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 1206
Kzo9I GATC 4 cut(s) 61, 196, 725, 1206
LmnI GCTCC 3 cut(s) 537, 877, 1085
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 3 cut(s) 134, 803, 1211
MaeI CTAG 1 cut(s) 840
MaeIII GTNAC 6 cut(s) 332, 350, 598, 682, 1059, 1190
MalI GATC 4 cut(s) 63, 198, 727, 1208
MboI GATC 4 cut(s) 61, 196, 725, 1206
MboII GAAGA 6 cut(s) 20, 23, 131, 448, 828, 930
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 1 cut(s) 725
MhlI GDGCHC 2 cut(s) 164, 465
MluCI AATT 8 cut(s) 69, 210, 564, 649, 716, 863, 1167, 1196
MlyI GAGTC 3 cut(s) 65, 329, 617
MnlI CCTC 6 cut(s) 115, 139, 630, 799, 868, 916
MreI CGCCGGCG 1 cut(s) 20
MroI TCCGGA 1 cut(s) 1217
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 2 cut(s) 38, 577
MseI TTAA 6 cut(s) 449, 563, 719, 852, 977, 1158
MspI CCGG 2 cut(s) 21, 1218
MspR9I CCNGG 2 cut(s) 433, 999
MunI CAATTG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 2 cut(s) 433, 999
MvnI CGCG 3 cut(s) 255, 257, 657
MwoI GCNNNNNNNGC 3 cut(s) 254, 263, 940
NaeI GCCGGC 1 cut(s) 22
NdeI CATATG 1 cut(s) 511
NdeII GATC 4 cut(s) 61, 196, 725, 1206
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 8 cut(s) 376, 533, 663, 694, 716, 752, 1027, 1147
NlaIV GGNNCC 1 cut(s) 539
NmuCI GTSAC 3 cut(s) 332, 598, 682
NspI RCATGY 3 cut(s) 533, 752, 1147
NspV TTCGAA 1 cut(s) 42
PaeI GCATGC 1 cut(s) 533
PagI TCATGA 1 cut(s) 372
PauI GCGCGC 2 cut(s) 253, 255
PciI ACATGT 1 cut(s) 1143
PctI GAATGC 1 cut(s) 427
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 2 cut(s) 38, 577
PfeI GAWTC 2 cut(s) 28, 833
PfoI TCCNGGA 1 cut(s) 431
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 3 cut(s) 64, 329, 616
PpsI GAGTC 3 cut(s) 64, 329, 616
PscI ACATGT 1 cut(s) 1143
Psp124BI GAGCTC 1 cut(s) 465
Psp6I CCWGG 2 cut(s) 431, 997
PspEI GGTNACC 1 cut(s) 682
PspGI CCWGG 2 cut(s) 431, 997
PspN4I GGNNCC 1 cut(s) 539
PstI CTGCAG 1 cut(s) 1074
PstNI CAGNNNCTG 1 cut(s) 816
PsuI RGATCY 1 cut(s) 725
PteI GCGCGC 2 cut(s) 253, 255
SacI GAGCTC 1 cut(s) 465
SaqAI TTAA 6 cut(s) 449, 563, 719, 852, 977, 1158
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 4 cut(s) 61, 196, 725, 1206
SchI GAGTC 3 cut(s) 65, 329, 617
ScrFI CCNGG 2 cut(s) 433, 999
SduI GDGCHC 2 cut(s) 164, 465
SfaNI GCATC 3 cut(s) 134, 803, 1211
SfcI CTRYAG 1 cut(s) 1070
SfuI TTCGAA 1 cut(s) 42
SgrAI CRCCGGYG 1 cut(s) 20
SphI GCATGC 1 cut(s) 533
Sse9I AATT 8 cut(s) 69, 210, 564, 649, 716, 863, 1167, 1196
SsiI CCGC 2 cut(s) 655, 740
SspI AATATT 1 cut(s) 471
SspMI CTAG 1 cut(s) 840
SstI GAGCTC 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 431, 997
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 3 cut(s) 42, 215, 274
TasI AATT 8 cut(s) 69, 210, 564, 649, 716, 863, 1167, 1196
TfiI GAWTC 2 cut(s) 28, 833
Tru1I TTAA 6 cut(s) 449, 563, 719, 852, 977, 1158
Tru9I TTAA 6 cut(s) 449, 563, 719, 852, 977, 1158
TscAI CASTG 2 cut(s) 186, 424
TseFI GTSAC 3 cut(s) 332, 598, 682
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 3 cut(s) 332, 598, 682
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 2 cut(s) 186, 424
XapI RAATTY 1 cut(s) 210
XceI RCATGY 3 cut(s) 533, 752, 1147
XmnI GAANNNNTTC 2 cut(s) 38, 577
XspI CTAG 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.