Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Reverse (-)

23596483 .. 23597202

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCAAGTTCTTTTTTCGTTATATGAGGCTGCTAAGCATGCGTTTATGGCAGCAAGTAGACAATATAAGGCACTTAACAGCAAATCAGATGTATCTGGGGATGAGAAGTCTTTGTATGTGTCGTTATCCTTGGATAATAGTTTTGAAAGTGACGTCATGAAGCATAGCGGGGCGCTTTGGTTGCCAAGTAGTGATTTAGGCACTGCATGGCATTCCAGGAAGCTTGTTGTGTCACAGAAGCATAAGCTCTCAGCATTTTTGGATAAACAACATTGGTGGTGCCGTGCATATTCTTGGTTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

102

Amino Acids

11.55

Weight (kDa)

9.1

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	58
AciI	CCGC	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	2 cut(s)	223, 247
AluI	AGCT	2 cut(s)	223, 247
ApeKI	GCWGC	2 cut(s)	29, 50
AspLEI	GCGC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	16, 62
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	217
BfoI	RGCGCY	1 cut(s)	176
BisI	GCNGC	2 cut(s)	30, 51
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	2 cut(s)	31, 52
Bme1390I	CCNGG	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	217
Bpu1102I	GCTNAGC	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	16, 62
BshNI	GGYRCC	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	211
Bsp1720I	GCTNAGC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	263
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	129
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	33, 250
BstF5I	GGATG	1 cut(s)	106
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 47, 181
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	16, 62
BtsCI	GGATG	1 cut(s)	106
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	39
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	1 cut(s)	175
CspCI	CAANNNNNGTGG	2 cut(s)	257, 292
CviAII	CATG	3 cut(s)	38, 157, 207
CviJI	RGCY	3 cut(s)	29, 223, 247
CviKI_1	RGCY	3 cut(s)	29, 223, 247
DdeI	CTNAG	2 cut(s)	33, 250
Eco130I	CCWWGG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	3 cut(s)	41, 160, 210
FatI	CATG	3 cut(s)	37, 156, 206
FauI	CCCGC	1 cut(s)	161
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	30, 51
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	2 cut(s)	30, 51
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	2 cut(s)	30, 51
HaeII	RGCGCY	1 cut(s)	176
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	41, 160, 210
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	4, 206, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 47, 181
HpyF3I	CTNAG	2 cut(s)	33, 250
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	41, 160, 210
HspAI	GCGC	1 cut(s)	173
LpnPI	CCDG	3 cut(s)	81, 202, 229
Lsp1109I	GCAGC	2 cut(s)	16, 62
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	149, 231
MluCI	AATT	1 cut(s)	301
MnlI	CCTC	1 cut(s)	19
MseI	TTAA	3 cut(s)	75, 299, 304
MspR9I	CCNGG	1 cut(s)	217
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	3 cut(s)	38, 47, 181
NlaIII	CATG	3 cut(s)	41, 160, 210
NlaIV	GGNNCC	1 cut(s)	281
NmuCI	GTSAC	2 cut(s)	149, 231
NspI	RCATGY	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	41
PagI	TCATGA	1 cut(s)	156
PctI	GAATGC	1 cut(s)	211
PfoI	TCCNGGA	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	31, 52
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	75, 299, 304
SatI	GCNGC	2 cut(s)	30, 51
ScrFI	CCNGG	1 cut(s)	217
SetI	ASST	3 cut(s)	156, 225, 249
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	129
TaiI	ACGT	1 cut(s)	156
TasI	AATT	1 cut(s)	301
Tru1I	TTAA	3 cut(s)	75, 299, 304
Tru9I	TTAA	3 cut(s)	75, 299, 304
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	2 cut(s)	149, 231
TseI	GCWGC	2 cut(s)	29, 50
Tsp45I	GTSAC	2 cut(s)	149, 231
TspDTI	ATGAA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	208
XceI	RCATGY	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	58
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.