Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Forward (+)

8616753 .. 8619837

Gene Structure 3085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG103900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGTGATGAGATTGGATTTGTTCATCCATCCCTGTTTGTCAACTTGAATGAAGAGGCATCCTCATCATCTGATGGTATTAGTAATGTGGTGTGCTCAGCAGATGGGAGTGCAGTGTTTTGGAATAGGGATCATAAGTTGGGAATTTCGACGGATGTTCTTATTCCATTATATAAGGAAGCTAAGCGCGCGCTGATGGCAGCAAATCGACAATATAAGGCACTTAATTGCGTAACTAGGGTTGAGATCTTTGTAAGTGCATCGTTATCTTTGGATAACAGTATTGAAAGTGAAGTCATGAAGCATAGCAGGGCTGTTTTGTTAGCGAGTTCTGATTTTGGCACTGCTTGGCATTCCAGAGGTCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

123

Amino Acids

13.4

Weight (kDa)

6.04

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	189, 191
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	49, 287
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	144
AspLEI	GCGC	3 cut(s)	189, 191, 193
AsuHPI	GGTGA	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	4 cut(s)	37, 68, 98, 190
BfaI	CTAG	1 cut(s)	237
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	1 cut(s)	201
BlpI	GCTNAGC	2 cut(s)	97, 183
BlsI	GCNGC	1 cut(s)	202
BmsI	GCATC	2 cut(s)	68, 269
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
Bpu1102I	GCTNAGC	2 cut(s)	97, 183
BseGI	GGATG	4 cut(s)	25, 29, 59, 160
BseMII	CTCAG	1 cut(s)	111
BsePI	GCGCGC	2 cut(s)	187, 189
BseXI	GCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	2 cut(s)	189, 191
BsiHKAI	GWGCWC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	130, 246
Bsp1720I	GCTNAGC	2 cut(s)	97, 183
BspCNI	CTCAG	1 cut(s)	110
BspFNI	CGCG	2 cut(s)	189, 191
BspHI	TCATGA	1 cut(s)	297
BspPI	GGATC	1 cut(s)	138
BssHII	GCGCGC	2 cut(s)	187, 189
BssMI	GATC	2 cut(s)	130, 246
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	189, 191
BstDEI	CTNAG	2 cut(s)	97, 183
BstF5I	GGATG	4 cut(s)	25, 29, 59, 160
BstFNI	CGCG	2 cut(s)	189, 191
BstHHI	GCGC	3 cut(s)	189, 191, 193
BstKTI	GATC	2 cut(s)	133, 249
BstMBI	GATC	2 cut(s)	130, 246
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 197
BstUI	CGCG	2 cut(s)	189, 191
BstV1I	GCAGC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BtsCI	GGATG	4 cut(s)	25, 29, 59, 160
BtsI	GCAGTG	2 cut(s)	120, 342
BtsIMutI	CAGTG	2 cut(s)	120, 342
Cac8I	GCNNGC	2 cut(s)	189, 191
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	3 cut(s)	189, 191, 193
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	2 cut(s)	182, 314
CviKI_1	RGCY	2 cut(s)	182, 314
DdeI	CTNAG	2 cut(s)	97, 183
DpnI	GATC	2 cut(s)	132, 248
DpnII	GATC	2 cut(s)	130, 246
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
FaeI	CATG	1 cut(s)	301
FaiI	YATR	6 cut(s)	135, 172, 174, 216, 299, 306
FatI	CATG	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	4 cut(s)	12, 16, 46, 167
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	3 cut(s)	188, 190, 192
GluI	GCNGC	1 cut(s)	201
HhaI	GCGC	3 cut(s)	189, 191, 193
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	3 cut(s)	187, 189, 191
HinP1I	GCGC	3 cut(s)	187, 189, 191
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	73, 334
Hpy188III	TCNNGA	2 cut(s)	298, 357
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	2 cut(s)	113, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 197
HpyF3I	CTNAG	2 cut(s)	97, 183
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	3 cut(s)	187, 189, 191
Kzo9I	GATC	2 cut(s)	130, 246
LpnPI	CCDG	2 cut(s)	47, 295
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	2 cut(s)	68, 269
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	2 cut(s)	132, 248
MboI	GATC	2 cut(s)	130, 246
MboII	GAAGA	1 cut(s)	65
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	2 cut(s)	144, 226
MnlI	CCTC	3 cut(s)	49, 73, 353
MseI	TTAA	1 cut(s)	225
Mva1269I	GAATGC	1 cut(s)	352
MvnI	CGCG	2 cut(s)	189, 191
MwoI	GCNNNNNNNGC	2 cut(s)	188, 197
NdeII	GATC	2 cut(s)	130, 246
NlaIII	CATG	1 cut(s)	301
PagI	TCATGA	1 cut(s)	297
PauI	GCGCGC	2 cut(s)	187, 189
PctI	GAATGC	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	246
PteI	GCGCGC	2 cut(s)	187, 189
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	130, 246
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	2 cut(s)	184, 364
SfaNI	GCATC	2 cut(s)	68, 269
SgeI	CNNG	9 cut(s)	46, 58, 200, 202, 249, 310, 322, 339, 360
Sse9I	AATT	2 cut(s)	144, 226
SspMI	CTAG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	149, 208
TasI	AATT	2 cut(s)	144, 226
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	120, 349
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	14, 66, 314
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	2 cut(s)	120, 349
XapI	RAATTY	1 cut(s)	144
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.