Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009629.1

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Forward (+)

46192 .. 49907

Gene Structure 3716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009629.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

atgagatggtataataagccaattgattcgcattctctgattgactgtgccacttcttctccgacgattttccggcgaaagatgaacgaagaagaaaaggccggcgagcttctgaatcagttcgaacagattttggagtccgatcctgcaattgatgagattggatttgttcatccatccctgtttgtcaacttgaatgaagaggcatcctcatcatctgatggtattagtaatgtggtgtgctcagcagatgggagtgcagtgttttggaatagggatcataagttgggaatttcgacggatgttcttattccattatataaggaagctaagctcacgctgatggcagcaaatcgacaatataagggagtttgtagcacatctgatataactggggttgagagttctgtatgtgactcattatcgttgggtaacggtgttgaaagtgaagtcatgaagcatagcagggctgttttgttagtgagttctgattttggcactgcttggaattccaggaagatggtgttgttaaagaagcaagagctctcaatattattggatgaacttctattctcagctcttgttctttcatatgcacctaaatctgagcatgcttggagccacaggcgatgggtcatcaagttaattgctggaaagtgttcaactctgcaagagattgtcaccaaagagtctgagctggtggagaaaatagctgagaggtcaaaaatgaattaccgcgcatggtatcatcgttgctggttggtgacctacatgacaacagagctggaggagcttgattggaatgaaatgttgataaagcgctacataggaagagaggaggagcttgattggaatgaaatgttgataaagcgctacataggaagagaggctctatggcttcatcggcgcttcctatccttattttggataaaacattttttaactggtcagaccagtctgcctgggtattggaagcacaaaaccagcatgaataatgactttgctatctttgtggataatgagttacatctcctgcagtcctgctccatcattccagatgacagttttgatgattaccaagcacaggctacatattctgctacttacaggttatggttgattaagcaaatccctgattctggtggcgttgaatttctagagaagctaagaaccaaacacctgaatgccctgctgaacaaggcctgccctgaaaggtcctcaacttgggattctataatggcctatgtcgaaacatcggaccattatgtgaaagagagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

426

Amino Acids

49.07

Weight (kDa)

5.69

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	738
AciI	CCGC	1 cut(s)	736
AclWI	GGATC	2 cut(s)	137, 285
AcsI	RAATTY	3 cut(s)	291, 508, 1151
AfeI	AGCGCT	2 cut(s)	821, 872
AfiI	CCNNNNNNNGG	4 cut(s)	924, 1084, 1139, 1224
AgsI	TTSAA	4 cut(s)	196, 443, 663, 1151
AjnI	CCWGG	2 cut(s)	512, 961
Alw21I	GWGCWC	2 cut(s)	245, 546
AlwI	GGATC	2 cut(s)	137, 285
Aor51HI	AGCGCT	2 cut(s)	821, 872
AoxI	GGCC	3 cut(s)	99, 1200, 1239
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	3 cut(s)	291, 508, 1151
Asp700I	GAANNNNTTC	2 cut(s)	119, 658
AspLEI	GCGC	4 cut(s)	740, 822, 873, 909
AspS9I	GGNCC	2 cut(s)	1215, 1258
AsuHPI	GGTGA	2 cut(s)	673, 775
AsuII	TTCGAA	1 cut(s)	123
AvaII	GGWCC	2 cut(s)	1215, 1258
BanII	GRGCYC	1 cut(s)	546
Bbv12I	GWGCWC	2 cut(s)	245, 546
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	7 cut(s)	184, 215, 245, 337, 514, 624, 1055
BciT130I	CCWGG	2 cut(s)	514, 963
BfaI	CTAG	1 cut(s)	1157
BfmI	CTRYAG	1 cut(s)	1034
BfoI	RGCGCY	3 cut(s)	823, 874, 910
BisI	GCNGC	1 cut(s)	348
BlpI	GCTNAGC	2 cut(s)	244, 330
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	2 cut(s)	514, 963
Bme18I	GGWCC	2 cut(s)	1215, 1258
BmgT120I	GGNCC	2 cut(s)	1215, 1258
BmiI	GGNNCC	1 cut(s)	620
BmrFI	CCNGG	2 cut(s)	514, 963
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpmI	CTGGAG	1 cut(s)	806
Bpu1102I	GCTNAGC	2 cut(s)	244, 330
Bpu14I	TTCGAA	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	962
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	4 cut(s)	924, 1084, 1139, 1224
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	3 cut(s)	397, 949, 954
BseBI	CCWGG	2 cut(s)	514, 963
BseDI	CCNNGG	1 cut(s)	962
BseGI	GGATG	5 cut(s)	172, 176, 206, 307, 565
BseLI	CCNNNNNNNGG	4 cut(s)	924, 1084, 1139, 1224
BseMII	CTCAG	5 cut(s)	258, 588, 597, 684, 705
BseNI	ACTGG	3 cut(s)	397, 949, 954
BseRI	GAGGAG	3 cut(s)	803, 851, 854
BseXI	GCAGC	1 cut(s)	359
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	738
BshFI	GGCC	3 cut(s)	101, 1202, 1241
BsiHKAI	GWGCWC	2 cut(s)	245, 546
BsiSI	CCGG	2 cut(s)	73, 102
BslI	CCNNNNNNNGG	4 cut(s)	924, 1084, 1139, 1224
BsmI	GAATGC	2 cut(s)	31, 1189
BsnI	GGCC	3 cut(s)	101, 1202, 1241
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	245, 546
Bsp143I	GATC	2 cut(s)	142, 277
Bsp1720I	GCTNAGC	2 cut(s)	244, 330
BspACI	CCGC	1 cut(s)	736
BspANI	GGCC	3 cut(s)	101, 1202, 1241
BspCNI	CTCAG	5 cut(s)	257, 587, 598, 685, 706
BspFNI	CGCG	1 cut(s)	738
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	620
BspMAI	CTGCAG	1 cut(s)	1038
BspPI	GGATC	2 cut(s)	137, 285
BspT104I	TTCGAA	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	3 cut(s)	397, 949, 954
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	962
BssMI	GATC	2 cut(s)	142, 277
Bst2UI	CCWGG	2 cut(s)	514, 963
Bst4CI	ACNGT	3 cut(s)	47, 437, 1064
Bst6I	CTCTTC	3 cut(s)	195, 826, 877
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	4 cut(s)	103, 107, 612, 1204
BstDEI	CTNAG	7 cut(s)	244, 330, 574, 606, 693, 714, 1166
BstEII	GGTNACC	1 cut(s)	763
BstF5I	GGATG	5 cut(s)	172, 176, 206, 307, 565
BstFNI	CGCG	1 cut(s)	738
BstH2I	RGCGCY	3 cut(s)	823, 874, 910
BstHHI	GCGC	4 cut(s)	740, 822, 873, 909
BstKTI	GATC	2 cut(s)	145, 280
BstMBI	GATC	2 cut(s)	142, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	790, 904
BstNI	CCWGG	2 cut(s)	514, 963
BstNSI	RCATGY	1 cut(s)	614
BstPI	GGTNACC	1 cut(s)	763
BstSCI	CCNGG	2 cut(s)	512, 961
BstSFI	CTRYAG	1 cut(s)	1034
BstUI	CGCG	1 cut(s)	738
BstV1I	GCAGC	1 cut(s)	359
BstXI	CCANNNNNNTGG	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	101, 1202, 1241
BtgZI	GCGATG	1 cut(s)	643
BtsCI	GGATG	5 cut(s)	172, 176, 206, 307, 565
BtsI	GCAGTG	2 cut(s)	267, 498
BtsIMutI	CAGTG	2 cut(s)	267, 498
Cac8I	GCNNGC	4 cut(s)	103, 107, 612, 1204
CciI	TCATGA	1 cut(s)	453
CfoI	GCGC	4 cut(s)	740, 822, 873, 909
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	1215, 1258
CviAII	CATG	5 cut(s)	454, 611, 741, 772, 988
DdeI	CTNAG	7 cut(s)	244, 330, 574, 606, 693, 714, 1166
DpnI	GATC	2 cut(s)	144, 279
DpnII	GATC	2 cut(s)	142, 277
Eam1104I	CTCTTC	3 cut(s)	195, 826, 877
EarI	CTCTTC	3 cut(s)	195, 826, 877
Ecl136II	GAGCTC	1 cut(s)	544
Eco147I	AGGCCT	1 cut(s)	1202
Eco24I	GRGCYC	1 cut(s)	546
Eco47I	GGWCC	2 cut(s)	1215, 1258
Eco47III	AGCGCT	2 cut(s)	821, 872
Eco53kI	GAGCTC	1 cut(s)	544
Eco91I	GGTNACC	1 cut(s)	763
EcoICRI	GAGCTC	1 cut(s)	544
EcoO109I	RGGNCCY	1 cut(s)	1215
EcoO65I	GGTNACC	1 cut(s)	763
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	2 cut(s)	512, 961
EcoT38I	GRGCYC	1 cut(s)	546
FaeI	CATG	5 cut(s)	457, 614, 744, 775, 991
FatI	CATG	5 cut(s)	453, 610, 740, 771, 987
FauNDI	CATATG	1 cut(s)	592
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	5 cut(s)	159, 163, 193, 314, 572
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	1157
GlaI	GCGC	4 cut(s)	739, 821, 872, 908
GluI	GCNGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	806
HaeII	RGCGCY	3 cut(s)	823, 874, 910
HaeIII	GGCC	3 cut(s)	101, 1202, 1241
HapII	CCGG	2 cut(s)	73, 102
HhaI	GCGC	4 cut(s)	740, 822, 873, 909
Hin1II	CATG	5 cut(s)	457, 614, 744, 775, 991
Hin6I	GCGC	4 cut(s)	738, 820, 871, 907
HinP1I	GCGC	4 cut(s)	738, 820, 871, 907
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	7 cut(s)	26, 115, 137, 416, 689, 1136, 1229
HpaII	CCGG	2 cut(s)	73, 102
HphI	GGTGA	2 cut(s)	673, 775
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188III	TCNNGA	3 cut(s)	454, 1055, 1157
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	2 cut(s)	67, 301
HpyCH4III	ACNGT	3 cut(s)	47, 437, 1064
HpyCH4V	TGCA	5 cut(s)	149, 260, 596, 670, 1036
HpyF10VI	GCNNNNNNNGC	2 cut(s)	790, 904
HpyF3I	CTNAG	7 cut(s)	244, 330, 574, 606, 693, 714, 1166
Hsp92II	CATG	5 cut(s)	457, 614, 744, 775, 991
HspAI	GCGC	4 cut(s)	738, 820, 871, 907
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	142, 277
LmnI	GCTCC	4 cut(s)	618, 790, 841, 1049
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	1 cut(s)	215
MaeI	CTAG	1 cut(s)	1157
MaeIII	GTNAC	5 cut(s)	413, 431, 679, 763, 1023
MalI	GATC	2 cut(s)	144, 279
MboI	GATC	2 cut(s)	142, 277
MboII	GAAGA	7 cut(s)	48, 101, 104, 212, 529, 843, 894
MfeI	CAATTG	2 cut(s)	21, 150
MhlI	GDGCHC	2 cut(s)	245, 546
MluCI	AATT	7 cut(s)	21, 150, 291, 508, 645, 730, 1151
MlyI	GAGTC	3 cut(s)	146, 410, 698
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	8 cut(s)	196, 220, 711, 781, 829, 832, 880, 1228
MroNI	GCCGGC	1 cut(s)	101
MroXI	GAANNNNTTC	2 cut(s)	119, 658
MseI	TTAA	4 cut(s)	530, 644, 941, 1122
MslI	CAYNNNNRTG	2 cut(s)	341, 1182
MspI	CCGG	2 cut(s)	73, 102
MspR9I	CCNGG	2 cut(s)	514, 963
MunI	CAATTG	2 cut(s)	21, 150
Mva1269I	GAATGC	2 cut(s)	31, 1189
MvaI	CCWGG	2 cut(s)	514, 963
MvnI	CGCG	1 cut(s)	738
MwoI	GCNNNNNNNGC	2 cut(s)	790, 904
NaeI	GCCGGC	1 cut(s)	103
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	2 cut(s)	142, 277
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	5 cut(s)	457, 614, 744, 775, 991
NlaIV	GGNNCC	1 cut(s)	620
NmuCI	GTSAC	3 cut(s)	413, 679, 763
NspI	RCATGY	1 cut(s)	614
NspV	TTCGAA	1 cut(s)	123
PaeI	GCATGC	1 cut(s)	614
PagI	TCATGA	1 cut(s)	453
PceI	AGGCCT	1 cut(s)	1202
PctI	GAATGC	2 cut(s)	31, 1189
PdiI	GCCGGC	1 cut(s)	103
PdmI	GAANNNNTTC	2 cut(s)	119, 658
PfeI	GAWTC	4 cut(s)	26, 115, 1136, 1229
PfoI	TCCNGGA	1 cut(s)	512
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	3 cut(s)	145, 410, 697
PpsI	GAGTC	3 cut(s)	145, 410, 697
PpuMI	RGGWCCY	1 cut(s)	1215
Psp124BI	GAGCTC	1 cut(s)	546
Psp5II	RGGWCCY	1 cut(s)	1215
Psp6I	CCWGG	2 cut(s)	512, 961
PspEI	GGTNACC	1 cut(s)	763
PspGI	CCWGG	2 cut(s)	512, 961
PspN4I	GGNNCC	1 cut(s)	620
PspPI	GGNCC	2 cut(s)	1215, 1258
PspPPI	RGGWCCY	1 cut(s)	1215
PstI	CTGCAG	1 cut(s)	1038
RseI	CAYNNNNRTG	2 cut(s)	341, 1182
SacI	GAGCTC	1 cut(s)	546
SaqAI	TTAA	4 cut(s)	530, 644, 941, 1122
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	2 cut(s)	142, 277
Sau96I	GGNCC	2 cut(s)	1215, 1258
SchI	GAGTC	3 cut(s)	146, 410, 698
ScrFI	CCNGG	2 cut(s)	514, 963
SduI	GDGCHC	2 cut(s)	245, 546
SfaNI	GCATC	1 cut(s)	215
SfcI	CTRYAG	1 cut(s)	1034
SfuI	TTCGAA	1 cut(s)	123
SinI	GGWCC	2 cut(s)	1215, 1258
SmiMI	CAYNNNNRTG	2 cut(s)	341, 1182
SphI	GCATGC	1 cut(s)	614
Sse9I	AATT	7 cut(s)	21, 150, 291, 508, 645, 730, 1151
SseBI	AGGCCT	1 cut(s)	1202
SsiI	CCGC	1 cut(s)	736
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	1 cut(s)	1157
SstI	GAGCTC	1 cut(s)	546
StuI	AGGCCT	1 cut(s)	1202
StyD4I	CCNGG	2 cut(s)	512, 961
TaaI	ACNGT	3 cut(s)	47, 437, 1064
TaqI	TCGA	4 cut(s)	123, 296, 355, 1248
TasI	AATT	7 cut(s)	21, 150, 291, 508, 645, 730, 1151
TfiI	GAWTC	4 cut(s)	26, 115, 1136, 1229
Tru1I	TTAA	4 cut(s)	530, 644, 941, 1122
Tru9I	TTAA	4 cut(s)	530, 644, 941, 1122
TscAI	CASTG	2 cut(s)	267, 505
TseFI	GTSAC	3 cut(s)	413, 679, 763
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	3 cut(s)	413, 679, 763
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	267, 505
VpaK11BI	GGWCC	2 cut(s)	1215, 1258
XapI	RAATTY	3 cut(s)	291, 508, 1151
XbaI	TCTAGA	1 cut(s)	1156
XceI	RCATGY	1 cut(s)	614
XmnI	GAANNNNTTC	2 cut(s)	119, 658
XspI	CTAG	1 cut(s)	1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.