Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Reverse (-)

31818509 .. 31819375

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1248100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGAAGGAGAGGAGCTGCGTCGTTCCGAAGCAGACACGGTCGATCTTCTGACTTATGAAGTGGTATTTCTTCACCCGTCCCAATTTTCCAAGCTGAATAAAGAGGCAGTCCATTTCTCACCCTCATCTGATGGCAGTACTGTGATGCGCTCAGCTAATGGCAACTCAGTTTTTTGGAATGGGGATCATAAGTTGGGGATTTCAACGCAATTTTTTTTCCCGTTATATGAAGCTTCTAAGCATGCGTTTATGGCAGCAAGTAGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

90

Amino Acids

10.02

Weight (kDa)

5.71

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	262
AclWI	GGATC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	204
AluBI	AGCT	4 cut(s)	16, 94, 155, 233
AluI	AGCT	4 cut(s)	16, 94, 155, 233
AlwI	GGATC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	16, 254
AspLEI	GCGC	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	65, 111
BbvI	GCAGC	2 cut(s)	3, 266
BccI	CCATC	1 cut(s)	125
BisI	GCNGC	2 cut(s)	17, 255
BlpI	GCTNAGC	1 cut(s)	151
BlsI	GCNGC	2 cut(s)	18, 256
BmcAI	AGTACT	1 cut(s)	139
BmsI	GCATC	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	165, 180
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	3, 266
Bsh1285I	CGRYCG	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	43, 184
Bsp1720I	GCTNAGC	1 cut(s)	151
BspCNI	CTCAG	2 cut(s)	164, 179
BspPI	GGATC	1 cut(s)	192
BssMI	GATC	2 cut(s)	43, 184
Bst4CI	ACNGT	2 cut(s)	40, 142
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	151, 166, 237
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	2 cut(s)	46, 187
BstMBI	GATC	2 cut(s)	43, 184
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	3, 266
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	1 cut(s)	150
CseI	GACGC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	4 cut(s)	16, 94, 155, 233
CviKI_1	RGCY	4 cut(s)	16, 94, 155, 233
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	3 cut(s)	151, 166, 237
DpnI	GATC	2 cut(s)	45, 186
DpnII	GATC	2 cut(s)	43, 184
FaeI	CATG	1 cut(s)	245
FaiI	YATR	6 cut(s)	57, 189, 226, 228, 243, 251
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	17, 255
Fsp4HI	GCNGC	2 cut(s)	17, 255
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	2 cut(s)	17, 255
HgaI	GACGC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	231
HphI	GGTGA	2 cut(s)	65, 111
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	3 cut(s)	28, 51, 130
Hpy8I	GTNNAC	1 cut(s)	263
Hpy99I	CGWCG	1 cut(s)	24
HpyCH4III	ACNGT	2 cut(s)	40, 142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	3 cut(s)	151, 166, 237
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	43, 184
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	2 cut(s)	3, 266
LweI	GCATC	1 cut(s)	135
MalI	GATC	2 cut(s)	45, 186
MboI	GATC	2 cut(s)	43, 184
MboII	GAAGA	2 cut(s)	38, 62
MluCI	AATT	2 cut(s)	83, 209
MnlI	CCTC	3 cut(s)	4, 97, 133
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	2 cut(s)	43, 184
NlaIII	CATG	1 cut(s)	245
NspI	RCATGY	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	245
PflFI	GACNNNGTC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	18, 256
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SatI	GCNGC	2 cut(s)	17, 255
Sau3AI	GATC	2 cut(s)	43, 184
ScaI	AGTACT	1 cut(s)	139
SetI	ASST	4 cut(s)	18, 96, 157, 235
SfaNI	GCATC	1 cut(s)	135
SgeI	CNNG	5 cut(s)	49, 88, 103, 232, 254
SphI	GCATGC	1 cut(s)	245
Sse9I	AATT	2 cut(s)	83, 209
TaaI	ACNGT	2 cut(s)	40, 142
TaqI	TCGA	1 cut(s)	42
TasI	AATT	2 cut(s)	83, 209
TatI	WGTACW	1 cut(s)	137
TseI	GCWGC	2 cut(s)	16, 254
TspDTI	ATGAA	2 cut(s)	72, 243
Tth111I	GACNNNGTC	1 cut(s)	38
XceI	RCATGY	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	262
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.