Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Reverse (-)

31839731 .. 31840850

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1248600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAAGGAGAGGAGCTGCGTTGTTCCGAAGCAGACACGGTCGATCTTCTGAATCAATTCGAATGTATCTTGGAATCCGATCCCCAAATAGATGAAGTGGGATTTCTTCACCCGTCCCAGTTTTCCAAGCTGAATAAAGAGGCAGGCCATTCCTCACCCTCATCTGATGACAGTACTGTGCTGCGCTCAGTTGATGGCAACTCAGTTTTTTGGAATAGGGATCATAAGTTGGGGATTTCAACACAAGTTCTTTTTCCGTTATATGAGGCTGCTAAGCATGCGTTTATGGCAGGAAGTAGACAATATAAGGCACTTAACAGCAAATCAGATGTATCTGGGGATGAGAAGTCTTTGTATGTGTCATTATCTTTGGATAATAGTTTTGAAAGTGACGTCATGAAGCATAGCAGGGCACTTTTGTTGCTAAGTAGTGATTTCGGCACTGCATGGCATTCCAGGTTTTCCCCCTTTTTCATTTTCGGTTCAGTAGTGATTTTTCCTCTCTCTTATACTTGTTATAACATCAACAACAACAACAACAACAAAGCCTTTTCCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

187

Amino Acids

20.82

Weight (kDa)

5.14

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
AatII	GACGTC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	298
AclWI	GGATC	2 cut(s)	74, 228
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	240, 386
AjnI	CCWGG	1 cut(s)	455
AluBI	AGCT	2 cut(s)	16, 130
AluI	AGCT	2 cut(s)	16, 130
AlwI	GGATC	2 cut(s)	74, 228
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	3 cut(s)	16, 181, 269
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	101, 147
AsuII	TTCGAA	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	415
BbvI	GCAGC	3 cut(s)	3, 168, 256
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	457
BisI	GCNGC	3 cut(s)	17, 182, 270
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	3 cut(s)	18, 183, 271
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	457
BmrI	ACTGGG	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	112
Bpu1102I	GCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	457
BseGI	GGATG	1 cut(s)	346
BseMII	CTCAG	2 cut(s)	201, 216
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	3 cut(s)	3, 168, 256
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	147
BsiEI	CGRYCG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	147
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	3 cut(s)	43, 79, 220
Bsp1720I	GCTNAGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	200, 215
BspHI	TCATGA	1 cut(s)	396
BspPI	GGATC	2 cut(s)	74, 228
BspT104I	TTCGAA	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	118
BssMI	GATC	3 cut(s)	43, 79, 220
BssNI	GRCGYC	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	3 cut(s)	40, 173, 178
BstACI	GRCGYC	1 cut(s)	393
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	145, 279
BstDEI	CTNAG	4 cut(s)	187, 202, 273, 425
BstF5I	GGATG	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	3 cut(s)	46, 82, 223
BstMBI	GATC	3 cut(s)	43, 79, 220
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 287
BstNI	CCWGG	1 cut(s)	457
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	455
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	3 cut(s)	3, 168, 256
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	145, 279
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	3 cut(s)	278, 397, 447
CviJI	RGCY	5 cut(s)	16, 130, 147, 269, 548
CviKI_1	RGCY	5 cut(s)	16, 130, 147, 269, 548
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	4 cut(s)	187, 202, 273, 425
DpnI	GATC	3 cut(s)	45, 81, 222
DpnII	GATC	3 cut(s)	43, 79, 220
EcoRII	CCWGG	1 cut(s)	455
FaeI	CATG	3 cut(s)	281, 400, 450
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	3 cut(s)	277, 396, 446
FblI	GTMKAC	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	17, 182, 270
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	3 cut(s)	17, 182, 270
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	3 cut(s)	17, 182, 270
HaeIII	GGCC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	186
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	3 cut(s)	281, 400, 450
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	52, 74
HphI	GGTGA	2 cut(s)	101, 147
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	5 cut(s)	28, 51, 79, 166, 328
Hpy188III	TCNNGA	1 cut(s)	397
Hpy8I	GTNNAC	1 cut(s)	299
HpyCH4III	ACNGT	3 cut(s)	40, 173, 178
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 287
HpyF3I	CTNAG	4 cut(s)	187, 202, 273, 425
HpySE526I	ACGT	1 cut(s)	393
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	281, 400, 450
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	43, 79, 220
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	7 cut(s)	129, 131, 276, 321, 394, 442, 469
Lsp1109I	GCAGC	3 cut(s)	3, 168, 256
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	3 cut(s)	45, 81, 222
MboI	GATC	3 cut(s)	43, 79, 220
MboII	GAAGA	2 cut(s)	38, 98
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	1 cut(s)	56
MnlI	CCTC	6 cut(s)	4, 133, 163, 169, 259, 510
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	457
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	2 cut(s)	278, 287
NdeII	GATC	3 cut(s)	43, 79, 220
NlaIII	CATG	3 cut(s)	281, 400, 450
NmuCI	GTSAC	1 cut(s)	389
NspI	RCATGY	1 cut(s)	281
NspV	TTCGAA	1 cut(s)	60
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	396
PctI	GAATGC	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	52, 74
PflFI	GACNNNGTC	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	18, 183, 271
PsiI	TTATAA	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	455
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	17, 182, 270
Sau3AI	GATC	3 cut(s)	43, 79, 220
ScaI	AGTACT	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	4 cut(s)	18, 132, 396, 461
SfuI	TTCGAA	1 cut(s)	60
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	455
TaaI	ACNGT	3 cut(s)	40, 173, 178
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	2 cut(s)	42, 60
TasI	AATT	1 cut(s)	56
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	52, 74
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	3 cut(s)	16, 181, 269
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	3 cut(s)	108, 413, 463
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	448
Tth111I	GACNNNGTC	1 cut(s)	38
XceI	RCATGY	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	56
ZraI	GACGTC	1 cut(s)	394
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.