Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Reverse (-)

29867578 .. 29872632

Gene Structure 5055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G350300.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGAAAATTGTTGCCTAGGTGCCCCTAGTTTATGCCAATTTTGCTTGAGATCTCTGCAACTGTCAAGTGGAAACAAAAAAGGAGTTAATGGAAACATTAAAGGGGCACTCATATTTAGCAATCAGCAAAGTGATGATTTTAATTTATATGGTCTCACAAGCTTACATGAAAGACCCAGGAGAGGAAACAGAAACCAAAGCGATGAGGTGGGATTTGTTCACCCATCCCAGTTTTTCAAGCTGAACGAAGAGGCAGGTCATTCCTTACCCTCATCTGACAGCACAGCTGATGAAAATTCAGTTTTTTGGAATGAGGATCATAAGTTGGGGATTTCAACACAAGTTCTTCTTCCATTATATAAGGCATCTAAGGATGCGTTTATGACAGCCAATAGACAGTTTAAGGAACTGAACAGCACCTCTGATGTATCTGGGGCTGAGAATTCTCTATGTACCTCACTGTCTTTGGATGACAGTATTGAAAGTGCCATCATGAAGCATAGCAGGGCTCTTTTGTTGCTAAGTTGTGATTTCGGCACTGCATGGCATTCCAGGAAGATCGTGGTGTTGGAGAAGCATAAGCTCTCATCATTACTGGATGAACTTCTCTTGTCAGCACTTGTTCTTTCATATTCACCTAAGTCTGAGTATGCTTGGAGCCATAGGAAGTGGGTTATCAAATCAATTTCTGAAAAGTGTTCAACTCTGCCAGAGATTGTGACCAAAGAGTCTGAGCTGGTGGAGAAAATAGCTGAGAAGTCAAAAATGAATTACCGTGCATGGAATCATCGTTGCTGGTTGGTTTCCTACATGACAAGAGAACAGTTGCTACATGAATTAAAGAGATCCAGAAACTGGGCCAACTTGCATGTTGCGGATCATAGTTGCTTCCATTATCGTAGTCAGCTAATGCTTAAGATTTTAGAGGACCGATGCTATGAACAAGAAATATCATCTTCTGGTTACAGTGTAGAAATATATCTACTGTGGAAGGATGAACTTGATTGGGATGAAATGCTGATAAAGCGCTACATAGGAAGAGAGGCTCTATGGCTTCATCGCCGCTTCCTTTCCTTATTTTGGATAAAGCATTTCTTAACTGATCACACTGGTCTGTCCGGCCATGGGAAGCAGAAAACCAGCATGAATAATGACTTCAGCGTATTTATGGATAATGAGTTACATCTCCTCCACTCCTGCTCAATCATTCCAGATAATAGCTTTGACGATTACCAAGCACAGGCTATGCATTCTGCTACTTACATGTTATGGTTGATTAAGCAAATCCCTGATTCTTGTCGGATTGAATTACAAGAGAAGCTCAAAACAGAAAATCTGAAAGCTCTGCTGAATAAGGTGTGCCCAGAAAGGTCCTCAACTTGGGATTGTTTAATGGGCTACGTTGAAGCATCTGACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

474

Amino Acids

54.51

Weight (kDa)

6.4

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	727
Acc36I	ACCTGC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	20
AccB7I	CCANNNNNTGG	1 cut(s)	855
AciI	CCGC	2 cut(s)	875, 1063
AclWI	GGATC	3 cut(s)	324, 840, 885
AcoI	YGGCCR	1 cut(s)	1120
AcsI	RAATTY	2 cut(s)	295, 442
AcuI	CTGAAG	1 cut(s)	1141
AfaI	GTAC	1 cut(s)	454
AfeI	AGCGCT	1 cut(s)	1028
AfiI	CCNNNNNNNGG	6 cut(s)	182, 855, 1080, 1125, 1240, 1380
AflII	CTTAAG	1 cut(s)	914
AflIII	ACRYGT	1 cut(s)	1263
AgsI	TTSAA	6 cut(s)	238, 336, 482, 702, 1307, 1406
AjnI	CCWGG	2 cut(s)	176, 551
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	3 cut(s)	324, 840, 885
AlwNI	CAGNNNCTG	1 cut(s)	855
Aor51HI	AGCGCT	1 cut(s)	1028
AoxI	GGCC	2 cut(s)	858, 1120
ApoI	RAATTY	2 cut(s)	295, 442
AspA2I	CCTAGG	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	1029
AspS9I	GGNCC	3 cut(s)	858, 928, 1371
AsuHPI	GGTGA	2 cut(s)	212, 627
AvaII	GGWCC	2 cut(s)	928, 1371
AvrII	CCTAGG	1 cut(s)	16
BaeGI	GKGCMC	3 cut(s)	25, 109, 1364
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	511
BccI	CCATC	2 cut(s)	232, 497
BciT130I	CCWGG	2 cut(s)	178, 553
BclI	TGATCA	1 cut(s)	1102
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	2 cut(s)	17, 27
BfoI	RGCGCY	1 cut(s)	1030
BfrI	CTTAAG	1 cut(s)	914
BfuAI	ACCTGC	1 cut(s)	245
BglII	AGATCT	1 cut(s)	50
BisI	GCNGC	1 cut(s)	1063
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	1064
Bme1390I	CCNGG	2 cut(s)	178, 553
Bme18I	GGWCC	2 cut(s)	928, 1371
BmgT120I	GGNCC	3 cut(s)	858, 928, 1371
BmiI	GGNNCC	2 cut(s)	22, 659
BmrFI	CCNGG	2 cut(s)	178, 553
BmrI	ACTGGG	2 cut(s)	223, 865
BmsI	GCATC	4 cut(s)	364, 374, 923, 1418
BmuI	ACTGGG	2 cut(s)	223, 865
BpuEI	CTTGAG	1 cut(s)	67
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	16, 176, 1123
BsaXI	ACNNNNNCTCC	2 cut(s)	1173, 1203
Bsc4I	CCNNNNNNNGG	6 cut(s)	182, 855, 1080, 1125, 1240, 1380
Bse1I	ACTGG	4 cut(s)	229, 600, 860, 1114
BseBI	CCWGG	2 cut(s)	178, 553
BseDI	CCNNGG	3 cut(s)	16, 176, 1123
BseGI	GGATG	6 cut(s)	224, 379, 475, 604, 1000, 1015
BseLI	CCNNNNNNNGG	6 cut(s)	182, 855, 1080, 1125, 1240, 1380
BseMII	CTCAG	4 cut(s)	429, 636, 723, 744
BseNI	ACTGG	4 cut(s)	229, 600, 860, 1114
BseRI	GAGGAG	1 cut(s)	1178
BseSI	GKGCMC	3 cut(s)	25, 109, 1364
BshFI	GGCC	2 cut(s)	860, 1122
BshNI	GGYRCC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	1119
BslI	CCNNNNNNNGG	6 cut(s)	182, 855, 1080, 1125, 1240, 1380
BsmAI	GTCTC	1 cut(s)	158
BsmI	GAATGC	2 cut(s)	547, 1249
BsnI	GGCC	2 cut(s)	860, 1122
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	4 cut(s)	25, 109, 511, 1364
Bsp143I	GATC	6 cut(s)	50, 316, 558, 845, 877, 1102
Bsp19I	CCATGG	1 cut(s)	1123
BspACI	CCGC	2 cut(s)	875, 1063
BspANI	GGCC	2 cut(s)	860, 1122
BspCNI	CTCAG	4 cut(s)	430, 637, 724, 745
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	2 cut(s)	22, 659
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	3 cut(s)	324, 840, 885
BspT107I	GGYRCC	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	914
BspTNI	GGTCTC	1 cut(s)	158
BsrI	ACTGG	4 cut(s)	229, 600, 860, 1114
BssECI	CCNNGG	3 cut(s)	16, 176, 1123
BssMI	GATC	6 cut(s)	50, 316, 558, 845, 877, 1102
BssT1I	CCWWGG	2 cut(s)	16, 1123
Bst2UI	CCWGG	2 cut(s)	178, 553
Bst4CI	ACNGT	8 cut(s)	63, 399, 462, 476, 776, 825, 968, 987
Bst6I	CTCTTC	2 cut(s)	243, 1033
BstAFI	CTTAAG	1 cut(s)	914
BstDEI	CTNAG	7 cut(s)	369, 438, 521, 639, 645, 732, 753
BstDSI	CCRYGG	1 cut(s)	1123
BstF5I	GGATG	6 cut(s)	224, 379, 475, 604, 1000, 1015
BstH2I	RGCGCY	1 cut(s)	1030
BstHHI	GCGC	1 cut(s)	1029
BstKTI	GATC	6 cut(s)	53, 319, 561, 848, 880, 1105
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	6 cut(s)	50, 316, 558, 845, 877, 1102
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 1024
BstNI	CCWGG	2 cut(s)	178, 553
BstNSI	RCATGY	2 cut(s)	872, 1267
BstSCI	CCNGG	2 cut(s)	176, 551
BstSLI	GKGCMC	3 cut(s)	25, 109, 1364
BstX2I	RGATCY	2 cut(s)	50, 845
BstYI	RGATCY	2 cut(s)	50, 845
BsuRI	GGCC	2 cut(s)	860, 1122
BtgI	CCRYGG	1 cut(s)	1123
BtgZI	GCGATG	2 cut(s)	216, 1043
BtsCI	GGATG	6 cut(s)	224, 379, 475, 604, 1000, 1015
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	4 cut(s)	458, 537, 973, 1107
BveI	ACCTGC	1 cut(s)	245
CaiI	CAGNNNCTG	1 cut(s)	855
CciI	TCATGA	1 cut(s)	492
CfoI	GCGC	1 cut(s)	1029
Cfr13I	GGNCC	3 cut(s)	858, 928, 1371
Csp6I	GTAC	1 cut(s)	453
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	7 cut(s)	369, 438, 521, 639, 645, 732, 753
DpnI	GATC	6 cut(s)	52, 318, 560, 847, 879, 1104
DpnII	GATC	6 cut(s)	50, 316, 558, 845, 877, 1102
DrdI	GACNNNNNNGTC	1 cut(s)	727
DseDI	GACNNNNNNGTC	1 cut(s)	727
EaeI	YGGCCR	1 cut(s)	1120
Eam1104I	CTCTTC	2 cut(s)	243, 1033
EarI	CTCTTC	2 cut(s)	243, 1033
Eco130I	CCWWGG	2 cut(s)	16, 1123
Eco24I	GRGCYC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	928, 1371
Eco47III	AGCGCT	1 cut(s)	1028
Eco57I	CTGAAG	1 cut(s)	1141
EcoO109I	RGGNCCY	1 cut(s)	1371
EcoRI	GAATTC	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	176, 551
EcoT14I	CCWWGG	2 cut(s)	16, 1123
EcoT22I	ATGCAT	1 cut(s)	1251
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	2 cut(s)	16, 1123
FalI	AAGNNNNNCTT	4 cut(s)	333, 365, 1079, 1111
FbaI	TGATCA	1 cut(s)	1102
Fnu4HI	GCNGC	1 cut(s)	1063
FokI	GGATG	6 cut(s)	211, 386, 482, 611, 1007, 1022
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	1 cut(s)	1063
FspBI	CTAG	2 cut(s)	17, 27
GlaI	GCGC	1 cut(s)	1028
GluI	GCNGC	1 cut(s)	1063
HaeII	RGCGCY	1 cut(s)	1030
HaeIII	GGCC	2 cut(s)	860, 1122
HapII	CCGG	1 cut(s)	1119
HhaI	GCGC	1 cut(s)	1029
Hin6I	GCGC	1 cut(s)	1027
HinP1I	GCGC	1 cut(s)	1027
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	3 cut(s)	728, 784, 1292
HpaII	CCGG	1 cut(s)	1119
HphI	GGTGA	2 cut(s)	212, 627
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	8 cut(s)	277, 424, 646, 691, 733, 1302, 1338, 1414
Hpy188III	TCNNGA	3 cut(s)	493, 849, 1211
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	985
HpyCH4III	ACNGT	8 cut(s)	63, 399, 462, 476, 776, 825, 968, 987
HpyCH4IV	ACGT	1 cut(s)	1401
HpyCH4V	TGCA	5 cut(s)	58, 542, 779, 868, 1249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 1024
HpyF3I	CTNAG	7 cut(s)	369, 438, 521, 639, 645, 732, 753
HpySE526I	ACGT	1 cut(s)	1401
HspAI	GCGC	1 cut(s)	1027
Ksp22I	TGATCA	1 cut(s)	1102
Kzo9I	GATC	6 cut(s)	50, 316, 558, 845, 877, 1102
LmnI	GCTCC	1 cut(s)	657
LweI	GCATC	4 cut(s)	364, 374, 923, 1418
MaeI	CTAG	2 cut(s)	17, 27
MaeII	ACGT	1 cut(s)	1401
MaeIII	GTNAC	3 cut(s)	718, 962, 1179
MalI	GATC	6 cut(s)	52, 318, 560, 847, 879, 1104
MboI	GATC	6 cut(s)	50, 316, 558, 845, 877, 1102
MboII	GAAGA	6 cut(s)	260, 338, 341, 568, 948, 1050
MflI	RGATCY	2 cut(s)	50, 845
MhlI	GDGCHC	4 cut(s)	25, 109, 511, 1364
MluCI	AATT	9 cut(s)	7, 38, 142, 295, 442, 684, 769, 836, 1307
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	2 cut(s)	549, 1280
Mph1103I	ATGCAT	1 cut(s)	1251
MspA1I	CMGCKG	1 cut(s)	287
MspCI	CTTAAG	1 cut(s)	914
MspI	CCGG	1 cut(s)	1119
MspR9I	CCNGG	2 cut(s)	178, 553
Mva1269I	GAATGC	2 cut(s)	547, 1249
MvaI	CCWGG	2 cut(s)	178, 553
MwoI	GCNNNNNNNGC	2 cut(s)	42, 1024
NcoI	CCATGG	1 cut(s)	1123
NdeII	GATC	6 cut(s)	50, 316, 558, 845, 877, 1102
NlaIV	GGNNCC	2 cut(s)	22, 659
NmuCI	GTSAC	1 cut(s)	718
NsiI	ATGCAT	1 cut(s)	1251
NspI	RCATGY	2 cut(s)	872, 1267
PagI	TCATGA	1 cut(s)	492
PciI	ACATGT	1 cut(s)	1263
PctI	GAATGC	2 cut(s)	547, 1249
PfeI	GAWTC	2 cut(s)	784, 1292
PflMI	CCANNNNNTGG	1 cut(s)	855
PfoI	TCCNGGA	1 cut(s)	551
PkrI	GCNGC	1 cut(s)	1064
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
PpuMI	RGGWCCY	1 cut(s)	1371
PscI	ACATGT	1 cut(s)	1263
Psp5II	RGGWCCY	1 cut(s)	1371
Psp6I	CCWGG	2 cut(s)	176, 551
PspGI	CCWGG	2 cut(s)	176, 551
PspN4I	GGNNCC	2 cut(s)	22, 659
PspPI	GGNCC	3 cut(s)	858, 928, 1371
PspPPI	RGGWCCY	1 cut(s)	1371
PsrI	GAACNNNNNNTAC	2 cut(s)	813, 845
PstNI	CAGNNNCTG	1 cut(s)	855
PsuI	RGATCY	2 cut(s)	50, 845
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SatI	GCNGC	1 cut(s)	1063
Sau3AI	GATC	6 cut(s)	50, 316, 558, 845, 877, 1102
Sau96I	GGNCC	3 cut(s)	858, 928, 1371
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	2 cut(s)	178, 553
SduI	GDGCHC	4 cut(s)	25, 109, 511, 1364
SfaNI	GCATC	4 cut(s)	364, 374, 923, 1418
SinI	GGWCC	2 cut(s)	928, 1371
SmlI	CTYRAG	2 cut(s)	46, 914
SmoI	CTYRAG	2 cut(s)	46, 914
Sse9I	AATT	9 cut(s)	7, 38, 142, 295, 442, 684, 769, 836, 1307
SsiI	CCGC	2 cut(s)	875, 1063
SspMI	CTAG	2 cut(s)	17, 27
StyD4I	CCNGG	2 cut(s)	176, 551
StyI	CCWWGG	2 cut(s)	16, 1123
TaaI	ACNGT	8 cut(s)	63, 399, 462, 476, 776, 825, 968, 987
TaiI	ACGT	1 cut(s)	1404
TaqII	GACCGA	1 cut(s)	945
TasI	AATT	9 cut(s)	7, 38, 142, 295, 442, 684, 769, 836, 1307
TauI	GCSGC	1 cut(s)	1065
TfiI	GAWTC	2 cut(s)	784, 1292
TscAI	CASTG	4 cut(s)	465, 544, 973, 1114
TseFI	GTSAC	1 cut(s)	718
Tsp45I	GTSAC	1 cut(s)	718
TspRI	CASTG	4 cut(s)	465, 544, 973, 1114
Van91I	CCANNNNNTGG	1 cut(s)	855
Vha464I	CTTAAG	1 cut(s)	914
VpaK11BI	GGWCC	2 cut(s)	928, 1371
XapI	RAATTY	2 cut(s)	295, 442
XceI	RCATGY	2 cut(s)	872, 1267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	2 cut(s)	17, 27
Zsp2I	ATGCAT	1 cut(s)	1251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.