Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Reverse (-)

21935393 .. 21938597

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20430.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGAACGAAGAGGAGCTGCGTCATTCGGAAGCAACCATGGCCGATCTTCTGAATCAATTCGAACGTATCTTGGAATCCGATCCCCAAATAGATGAGGTGGGATTTCTTCACCCGTCCCAGTTTTCCGAGCTGAATAAAGAGGTAGGCCATTCACCCTCATTTGATGACAGTACTGTGCTGCGCTCGGCAGATGGAAACTCAGTTTTTTGGAATAGGGATCATAAGTTGGGGATTTCAACGCAAATTCTTCTTCCATTATATAAGGCAGCTAAGCATGCGTTTATGGCAGCAAATAGACAATATAAGGCACTTAACAGAAAATCTGATGTATCCGGGGATGAGAACTCTTTGTGTGCGTCATTATCTTTGGATAGCAGTTTTGAAAGTGATGTCATGAAGCATAGCAGGGCGCTTTTGTTGCTAAGTTGTGATTTCGGCACTGCATGGCATTCCAGGAAACTTGTTGTGTCGCAGAAGCATAAGCTCTCGGATTTTTTGGATGAACTTCTCTTGTCGGCACTTGTTCTTTCATATTCACCTAAGTCTGAGTATGCTTGGAGCCATAGGCAGTGGGTCATCAAGTCAATTGCTGGAAAGTGTTCAACTCTGTCAGAGATTGTGACCAAAGACTCTGAGCTGGTGGAGAAAATAGCTGAGAGGTCAAAAATGAATTACCGTGCTTGGAATCATCGTTGCTGGTTGGTTACCTACATGACAAGAGAACAGTTGTTATATGAATTAAAAAGATCCAGAAACTGGGCCTCCTTGCATGTTGCTGATCATAGTTGCTTCCATTATCGCAGTCGGCTAATGCTTAAGATTTTAGAAGGGCAATGCTATAAACAAGAAATTTCATCTTCTGGTTACAGCGTTGGGACATATCAATTGTGGAAGGAAGAGCTTGATTGGGATGAAATGTTGATAAAGCGCTACATAGGAAGAGAGGCTCTATGGCTTCATCGTCGCTTCCTTTCCTTATTTTGGATAAAGCATTTCATAACTGATCATAGTGGTGTGTCCAGCCACGGGAAGCAGAATAACAGCATGAATAACGACTTCAGAATATTTATGGATAACGAGTTACATCTCCTCGACTCCTGCTCAATCATTCCAGATAATAGCTTTGACGATTACCAAGCACAGGCTAAACATTCTGCCACTTATATATTATGGTTGATTAAGCAAATCCCTGATTCCCGACGGATTGAATTTCAAGAGAAGCTGAAAACCGAAAACCTAAAAGCTCTGTTGAATAAGGCGTGCCCGGAGAGGTCCTCAACTTGGGATTCTTTAGTGAGCTATGTAGAAGCATCTGGACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

441

Amino Acids

51.1

Weight (kDa)

6.58

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	756
AclWI	GGATC	3 cut(s)	74, 225, 741
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	3 cut(s)	243, 849, 1208
AcuI	CTGAAG	1 cut(s)	1042
AfaI	GTAC	1 cut(s)	172
AfeI	AGCGCT	1 cut(s)	929
AfiI	CCNNNNNNNGG	5 cut(s)	756, 981, 1026, 1141, 1281
AflII	CTTAAG	1 cut(s)	815
AgsI	TTSAA	6 cut(s)	237, 383, 603, 1208, 1214, 1252
AjnI	CCWGG	1 cut(s)	452
AlwI	GGATC	3 cut(s)	74, 225, 741
AlwNI	CAGNNNCTG	1 cut(s)	756
Aor51HI	AGCGCT	1 cut(s)	929
AoxI	GGCC	3 cut(s)	39, 145, 759
ApeKI	GCWGC	4 cut(s)	16, 178, 266, 287
ApoI	RAATTY	3 cut(s)	243, 849, 1208
Asp700I	GAANNNNTTC	2 cut(s)	56, 598
AspLEI	GCGC	3 cut(s)	183, 412, 930
AspS9I	GGNCC	2 cut(s)	759, 1272
AsuC2I	CCSGG	2 cut(s)	334, 1265
AsuHPI	GGTGA	3 cut(s)	101, 144, 528
AsuII	TTCGAA	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	1272
BaeGI	GKGCMC	1 cut(s)	1265
BbvI	GCAGC	4 cut(s)	3, 165, 278, 299
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	454
BciVI	GTATCC	1 cut(s)	340
BclI	TGATCA	2 cut(s)	778, 1003
BcnI	CCSGG	2 cut(s)	334, 1265
BfoI	RGCGCY	2 cut(s)	413, 931
BfrI	CTTAAG	1 cut(s)	815
BfuI	GTATCC	1 cut(s)	340
BisI	GCNGC	4 cut(s)	17, 179, 267, 288
BlpI	GCTNAGC	1 cut(s)	270
BlsI	GCNGC	4 cut(s)	18, 180, 268, 289
BmcAI	AGTACT	1 cut(s)	172
Bme1390I	CCNGG	3 cut(s)	334, 454, 1265
Bme18I	GGWCC	1 cut(s)	1272
BmgT120I	GGNCC	2 cut(s)	759, 1272
BmiI	GGNNCC	1 cut(s)	560
BmrFI	CCNGG	3 cut(s)	334, 454, 1265
BmrI	ACTGGG	2 cut(s)	112, 766
BmsI	GCATC	1 cut(s)	1319
BmuI	ACTGGG	2 cut(s)	112, 766
BplI	GAGNNNNNCTC	2 cut(s)	1259, 1291
Bpu1102I	GCTNAGC	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	60
BpuMI	CCSGG	2 cut(s)	334, 1265
BsaJI	CCNNGG	3 cut(s)	36, 333, 1024
BsaXI	ACNNNNNCTCC	2 cut(s)	746, 776
Bsc4I	CCNNNNNNNGG	5 cut(s)	756, 981, 1026, 1141, 1281
Bse1I	ACTGG	2 cut(s)	118, 761
Bse3DI	GCAATG	1 cut(s)	839
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	3 cut(s)	36, 333, 1024
BseGI	GGATG	3 cut(s)	343, 505, 916
BseLI	CCNNNNNNNGG	5 cut(s)	756, 981, 1026, 1141, 1281
BseMI	GCAATG	1 cut(s)	839
BseMII	CTCAG	4 cut(s)	213, 537, 624, 645
BseNI	ACTGG	2 cut(s)	118, 761
BseRI	GAGGAG	2 cut(s)	26, 1079
BseSI	GKGCMC	1 cut(s)	1265
BseXI	GCAGC	4 cut(s)	3, 165, 278, 299
BshFI	GGCC	3 cut(s)	41, 147, 761
BsiSI	CCGG	2 cut(s)	333, 1265
BslFI	GGGAC	2 cut(s)	100, 889
BslI	CCNNNNNNNGG	5 cut(s)	756, 981, 1026, 1141, 1281
BsmFI	GGGAC	2 cut(s)	100, 889
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	41, 147, 761
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	1265
Bsp143I	GATC	6 cut(s)	43, 79, 217, 746, 778, 1003
Bsp1720I	GCTNAGC	1 cut(s)	270
Bsp19I	CCATGG	1 cut(s)	36
BspANI	GGCC	3 cut(s)	41, 147, 761
BspCNI	CTCAG	4 cut(s)	212, 538, 625, 646
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	560
BspPI	GGATC	3 cut(s)	74, 225, 741
BspQI	GCTCTTC	1 cut(s)	891
BspT104I	TTCGAA	1 cut(s)	60
BspTI	CTTAAG	1 cut(s)	815
BsrDI	GCAATG	1 cut(s)	839
BsrI	ACTGG	2 cut(s)	118, 761
BssECI	CCNNGG	3 cut(s)	36, 333, 1024
BssMI	GATC	6 cut(s)	43, 79, 217, 746, 778, 1003
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	4 cut(s)	170, 175, 677, 726
Bst6I	CTCTTC	3 cut(s)	3, 891, 934
BstAFI	CTTAAG	1 cut(s)	815
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	276, 1261
BstDEI	CTNAG	7 cut(s)	199, 270, 422, 540, 546, 633, 654
BstDSI	CCRYGG	2 cut(s)	36, 1024
BstEII	GGTNACC	1 cut(s)	703
BstF5I	GGATG	3 cut(s)	343, 505, 916
BstH2I	RGCGCY	2 cut(s)	413, 931
BstHHI	GCGC	3 cut(s)	183, 412, 930
BstKTI	GATC	6 cut(s)	46, 82, 220, 749, 781, 1006
BstMBI	GATC	6 cut(s)	43, 79, 217, 746, 778, 1003
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 275, 284, 418
BstNI	CCWGG	1 cut(s)	454
BstNSI	RCATGY	2 cut(s)	278, 773
BstPI	GGTNACC	1 cut(s)	703
BstSCI	CCNGG	3 cut(s)	332, 452, 1263
BstSLI	GKGCMC	1 cut(s)	1265
BstV1I	GCAGC	4 cut(s)	3, 165, 278, 299
BstX2I	RGATCY	1 cut(s)	746
BstYI	RGATCY	1 cut(s)	746
BsuI	GTATCC	1 cut(s)	340
BsuRI	GGCC	3 cut(s)	41, 147, 761
BtgI	CCRYGG	2 cut(s)	36, 1024
BtsCI	GGATG	3 cut(s)	343, 505, 916
BtsI	GCAGTG	2 cut(s)	438, 575
BtsIMutI	CAGTG	2 cut(s)	438, 575
Cac8I	GCNNGC	2 cut(s)	276, 1261
CaiI	CAGNNNCTG	1 cut(s)	756
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	3 cut(s)	183, 412, 930
Cfr13I	GGNCC	2 cut(s)	759, 1272
CseI	GACGC	2 cut(s)	8, 345
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	7 cut(s)	37, 275, 394, 444, 712, 770, 1045
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	7 cut(s)	199, 270, 422, 540, 546, 633, 654
DpnI	GATC	6 cut(s)	45, 81, 219, 748, 780, 1005
DpnII	GATC	6 cut(s)	43, 79, 217, 746, 778, 1003
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	3 cut(s)	3, 891, 934
EarI	CTCTTC	3 cut(s)	3, 891, 934
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	1272
Eco47III	AGCGCT	1 cut(s)	929
Eco57I	CTGAAG	1 cut(s)	1042
Eco91I	GGTNACC	1 cut(s)	703
EcoO109I	RGGNCCY	1 cut(s)	1272
EcoO65I	GGTNACC	1 cut(s)	703
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	7 cut(s)	40, 278, 397, 447, 715, 773, 1048
FaqI	GGGAC	2 cut(s)	100, 889
FatI	CATG	7 cut(s)	36, 274, 393, 443, 711, 769, 1044
FbaI	TGATCA	2 cut(s)	778, 1003
Fnu4HI	GCNGC	4 cut(s)	17, 179, 267, 288
FokI	GGATG	3 cut(s)	350, 512, 923
Fsp4HI	GCNGC	4 cut(s)	17, 179, 267, 288
GlaI	GCGC	3 cut(s)	182, 411, 929
GluI	GCNGC	4 cut(s)	17, 179, 267, 288
HaeII	RGCGCY	2 cut(s)	413, 931
HaeIII	GGCC	3 cut(s)	41, 147, 761
HapII	CCGG	2 cut(s)	333, 1265
HgaI	GACGC	2 cut(s)	8, 345
HhaI	GCGC	3 cut(s)	183, 412, 930
Hin1II	CATG	7 cut(s)	40, 278, 397, 447, 715, 773, 1048
Hin6I	GCGC	3 cut(s)	181, 410, 928
HinP1I	GCGC	3 cut(s)	181, 410, 928
HinfI	GANTC	7 cut(s)	52, 74, 629, 685, 1094, 1193, 1286
HpaII	CCGG	2 cut(s)	333, 1265
HphI	GGTGA	3 cut(s)	101, 144, 528
Hpy188III	TCNNGA	6 cut(s)	394, 750, 1112, 1197, 1214, 1314
Hpy99I	CGWCG	2 cut(s)	966, 1203
HpyAV	CCTTC	2 cut(s)	821, 886
HpyCH4III	ACNGT	4 cut(s)	170, 175, 677, 726
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	443, 769
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 275, 284, 418
HpyF3I	CTNAG	7 cut(s)	199, 270, 422, 540, 546, 633, 654
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	7 cut(s)	40, 278, 397, 447, 715, 773, 1048
HspAI	GCGC	3 cut(s)	181, 410, 928
Ksp22I	TGATCA	2 cut(s)	778, 1003
Kzo9I	GATC	6 cut(s)	43, 79, 217, 746, 778, 1003
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	2 cut(s)	13, 558
Lsp1109I	GCAGC	4 cut(s)	3, 165, 278, 299
LweI	GCATC	1 cut(s)	1319
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	4 cut(s)	619, 703, 863, 1080
MalI	GATC	6 cut(s)	45, 81, 219, 748, 780, 1005
MboI	GATC	6 cut(s)	43, 79, 217, 746, 778, 1003
MboII	GAAGA	8 cut(s)	20, 38, 98, 239, 242, 849, 908, 951
MfeI	CAATTG	2 cut(s)	585, 884
MflI	RGATCY	1 cut(s)	746
MhlI	GDGCHC	1 cut(s)	1265
MluCI	AATT	8 cut(s)	56, 243, 585, 670, 737, 849, 884, 1208
MlyI	GAGTC	2 cut(s)	623, 1088
MroXI	GAANNNNTTC	2 cut(s)	56, 598
MseI	TTAA	4 cut(s)	312, 740, 816, 1179
MslI	CAYNNNNRTG	1 cut(s)	1011
MspCI	CTTAAG	1 cut(s)	815
MspI	CCGG	2 cut(s)	333, 1265
MspR9I	CCNGG	3 cut(s)	334, 454, 1265
MunI	CAATTG	2 cut(s)	585, 884
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	4 cut(s)	38, 275, 284, 418
NciI	CCSGG	2 cut(s)	334, 1265
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	6 cut(s)	43, 79, 217, 746, 778, 1003
NlaIII	CATG	7 cut(s)	40, 278, 397, 447, 715, 773, 1048
NlaIV	GGNNCC	1 cut(s)	560
NmeAIII	GCCGAG	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	619
NspI	RCATGY	2 cut(s)	278, 773
NspV	TTCGAA	1 cut(s)	60
PaeI	GCATGC	1 cut(s)	278
PagI	TCATGA	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	891
PctI	GAATGC	1 cut(s)	448
PdmI	GAANNNNTTC	2 cut(s)	56, 598
PfeI	GAWTC	5 cut(s)	52, 74, 685, 1193, 1286
PflMI	CCANNNNNTGG	1 cut(s)	756
PfoI	TCCNGGA	1 cut(s)	452
PkrI	GCNGC	4 cut(s)	18, 180, 268, 289
PleI	GAGTC	2 cut(s)	623, 1088
PpsI	GAGTC	2 cut(s)	623, 1088
PpuMI	RGGWCCY	1 cut(s)	1272
Psp5II	RGGWCCY	1 cut(s)	1272
Psp6I	CCWGG	1 cut(s)	452
PspEI	GGTNACC	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	1 cut(s)	560
PspPI	GGNCC	2 cut(s)	759, 1272
PspPPI	RGGWCCY	1 cut(s)	1272
PstNI	CAGNNNCTG	1 cut(s)	756
PsuI	RGATCY	1 cut(s)	746
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	1011
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	4 cut(s)	312, 740, 816, 1179
SatI	GCNGC	4 cut(s)	17, 179, 267, 288
Sau3AI	GATC	6 cut(s)	43, 79, 217, 746, 778, 1003
Sau96I	GGNCC	2 cut(s)	759, 1272
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	2 cut(s)	623, 1088
ScrFI	CCNGG	3 cut(s)	334, 454, 1265
SduI	GDGCHC	1 cut(s)	1265
SfaNI	GCATC	1 cut(s)	1319
SfuI	TTCGAA	1 cut(s)	60
SinI	GGWCC	1 cut(s)	1272
SmiMI	CAYNNNNRTG	1 cut(s)	1011
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	8 cut(s)	56, 243, 585, 670, 737, 849, 884, 1208
SspI	AATATT	1 cut(s)	1065
StyD4I	CCNGG	3 cut(s)	332, 452, 1263
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	4 cut(s)	170, 175, 677, 726
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	60, 1092
TasI	AATT	8 cut(s)	56, 243, 585, 670, 737, 849, 884, 1208
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	5 cut(s)	52, 74, 685, 1193, 1286
Tru1I	TTAA	4 cut(s)	312, 740, 816, 1179
Tru9I	TTAA	4 cut(s)	312, 740, 816, 1179
TscAI	CASTG	2 cut(s)	445, 575
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	4 cut(s)	16, 178, 266, 287
Tsp45I	GTSAC	1 cut(s)	619
TspGWI	ACGGA	1 cut(s)	1216
TspRI	CASTG	2 cut(s)	445, 575
Van91I	CCANNNNNTGG	1 cut(s)	756
Vha464I	CTTAAG	1 cut(s)	815
VpaK11BI	GGWCC	1 cut(s)	1272
XapI	RAATTY	3 cut(s)	243, 849, 1208
XceI	RCATGY	2 cut(s)	278, 773
XmnI	GAANNNNTTC	2 cut(s)	56, 598
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.