Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Reverse (-)

73420930 .. 73421743

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021254

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGAGTGCAGCTAGTGTTTTGGAATAGGGATCATAAGTTGGGAATTTCGACGGATGTTCTTATTCCATTATATAAGGAAGCTAAGCTCGCGCTGATGGCAGCAAATCGACAATATAAGGCACTTAATTGCGTAACTGGGGTTGAGAGCTCTGTATGTGCCTTGTTATCTTTGGATAACGGTATTGAAAGTGAAGTCATGAAGCATAGCAAGGCTGTTTTGTTAGTGAGTTCTGATTTTGGCACTGCTTGGCATTCTAGGAAGATGGTGTTGTTAAAGAAGCAAGAGCTCTCAATTTTATTGGATGAACTTGTATTCTCACGCTTGTTCTTTCATATGCACCGAAATCTGAGCATGCTTGGAGCCACAGGCAATGGGTCATCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

130

Amino Acids

14.31

Weight (kDa)

9.0

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	92
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	188
AluBI	AGCT	5 cut(s)	13, 83, 88, 150, 289
AluI	AGCT	5 cut(s)	13, 83, 88, 150, 289
Alw21I	GWGCWC	2 cut(s)	152, 291
AlwI	GGATC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	10, 101
ApoI	RAATTY	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	94
BanII	GRGCYC	2 cut(s)	152, 291
Bbv12I	GWGCWC	2 cut(s)	152, 291
BbvI	GCAGC	2 cut(s)	22, 113
BccI	CCATC	2 cut(s)	91, 259
BfaI	CTAG	2 cut(s)	14, 258
BisI	GCNGC	2 cut(s)	11, 102
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	2 cut(s)	12, 103
BmiI	GGNNCC	1 cut(s)	364
BmrI	ACTGGG	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	379
BseGI	GGATG	2 cut(s)	61, 310
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	22, 113
BsgI	GTGCAG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	152, 291
BsmI	GAATGC	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	152, 291
Bsp143I	GATC	1 cut(s)	31
Bsp1720I	GCTNAGC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	142
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	90, 356
BstDEI	CTNAG	2 cut(s)	84, 350
BstF5I	GGATG	2 cut(s)	61, 310
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 98
BstNSI	RCATGY	1 cut(s)	358
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	22, 113
BtsCI	GGATG	2 cut(s)	61, 310
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	90, 356
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	1 cut(s)	94
CviAII	CATG	2 cut(s)	199, 355
CviJI	RGCY	7 cut(s)	13, 83, 88, 150, 215, 289, 365
CviKI_1	RGCY	7 cut(s)	13, 83, 88, 150, 215, 289, 365
DdeI	CTNAG	2 cut(s)	84, 350
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Ecl136II	GAGCTC	2 cut(s)	150, 289
Eco24I	GRGCYC	2 cut(s)	152, 291
Eco53kI	GAGCTC	2 cut(s)	150, 289
EcoICRI	GAGCTC	2 cut(s)	150, 289
EcoT38I	GRGCYC	2 cut(s)	152, 291
FaeI	CATG	2 cut(s)	202, 358
FatI	CATG	2 cut(s)	198, 354
FauNDI	CATATG	1 cut(s)	336
Fnu4HI	GCNGC	2 cut(s)	11, 102
FokI	GGATG	2 cut(s)	68, 317
FriOI	GRGCYC	2 cut(s)	152, 291
Fsp4HI	GCNGC	2 cut(s)	11, 102
FspBI	CTAG	2 cut(s)	14, 258
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	2 cut(s)	11, 102
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	202, 358
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	235, 351
Hpy188III	TCNNGA	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	2 cut(s)	10, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 98
HpyF3I	CTNAG	2 cut(s)	84, 350
Hsp92II	CATG	2 cut(s)	202, 358
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	362
LpnPI	CCDG	2 cut(s)	123, 354
Lsp1109I	GCAGC	2 cut(s)	22, 113
MaeI	CTAG	2 cut(s)	14, 258
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	274
MhlI	GDGCHC	2 cut(s)	152, 291
MluCI	AATT	3 cut(s)	45, 127, 294
MseI	TTAA	3 cut(s)	126, 275, 388
Mva1269I	GAATGC	1 cut(s)	253
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	89, 98
NdeI	CATATG	1 cut(s)	336
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	202, 358
NlaIV	GGNNCC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PagI	TCATGA	1 cut(s)	198
PctI	GAATGC	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	12, 103
Psp124BI	GAGCTC	2 cut(s)	152, 291
PspN4I	GGNNCC	1 cut(s)	364
SacI	GAGCTC	2 cut(s)	152, 291
SaqAI	TTAA	3 cut(s)	126, 275, 388
SatI	GCNGC	2 cut(s)	11, 102
Sau3AI	GATC	1 cut(s)	31
SduI	GDGCHC	2 cut(s)	152, 291
SetI	ASST	5 cut(s)	15, 85, 90, 152, 291
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	3 cut(s)	45, 127, 294
SspMI	CTAG	2 cut(s)	14, 258
SstI	GAGCTC	2 cut(s)	152, 291
TaaI	ACNGT	1 cut(s)	182
TaqI	TCGA	2 cut(s)	50, 109
TasI	AATT	3 cut(s)	45, 127, 294
Tru1I	TTAA	3 cut(s)	126, 275, 388
Tru9I	TTAA	3 cut(s)	126, 275, 388
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	2 cut(s)	10, 101
TspDTI	ATGAA	3 cut(s)	215, 321, 323
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	45
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	2 cut(s)	14, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.