Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Forward (+)

9781268 .. 9781627

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG118600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCAAGTGGCTTATGGTTTGTGTTTTGCACTTAAACTCAGTGATGAGATTGGATTTGTTCATCCATCCCTGTTTGTCAACTTGAATGAAGAGGCATCCTCATCATCTGATGGTATTACTAATGTGGTGTGCTCAGCAGATGGGAGTGCAGTGTTTTGGAATAGGGCTCATAAGTTGGGAATTTCGACGGATGTTCTTATTCCATTATATAAGGAACCTAAGCGCGCGCTGATGGCAGCAAATCGACAATATAAGGCAATTAATTGCGTAACTGGGGTTGAGACCTCTGTATGTGCCTCGTTATCTTTGGATAAGGTATTGAAAGTGAAGTCACGAAGCATAGTAGGGTTGTTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

119

Amino Acids

12.83

Weight (kDa)

8.3

Isoelectric Point (pI)

19.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	225, 227
AcsI	RAATTY	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	85, 322
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	180
AseI	ATTAAT	1 cut(s)	261
AspLEI	GCGC	3 cut(s)	225, 227, 229
BanII	GRGCYC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	4 cut(s)	73, 104, 134, 226
BcoDI	GTCTC	1 cut(s)	275
BisI	GCNGC	1 cut(s)	237
BlpI	GCTNAGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	216
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	133
BsaI	GGTCTC	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	277
BseGI	GGATG	4 cut(s)	61, 65, 95, 196
BseMII	CTCAG	2 cut(s)	52, 147
BseNI	ACTGG	1 cut(s)	277
BsePI	GCGCGC	2 cut(s)	223, 225
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	168
Bsh1236I	CGCG	2 cut(s)	225, 227
BsiHKAI	GWGCWC	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	134, 169
Bsp1720I	GCTNAGC	1 cut(s)	133
BspCNI	CTCAG	2 cut(s)	51, 146
BspFNI	CGCG	2 cut(s)	225, 227
BspLI	GGNNCC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	277
BssHII	GCGCGC	2 cut(s)	223, 225
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	225, 227
BstDEI	CTNAG	3 cut(s)	38, 133, 219
BstF5I	GGATG	4 cut(s)	61, 65, 95, 196
BstFNI	CGCG	2 cut(s)	225, 227
BstHHI	GCGC	3 cut(s)	225, 227, 229
BstMAI	GTCTC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstUI	CGCG	2 cut(s)	225, 227
BstV1I	GCAGC	1 cut(s)	248
BtsCI	GGATG	4 cut(s)	61, 65, 95, 196
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	46, 156
Cac8I	GCNNGC	2 cut(s)	225, 227
CfoI	GCGC	3 cut(s)	225, 227, 229
CviJI	RGCY	2 cut(s)	11, 167
CviKI_1	RGCY	2 cut(s)	11, 167
DdeI	CTNAG	3 cut(s)	38, 133, 219
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	169
FaiI	YATR	7 cut(s)	15, 171, 208, 210, 252, 292, 341
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	4 cut(s)	48, 52, 82, 203
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	237
GlaI	GCGC	3 cut(s)	224, 226, 228
GluI	GCNGC	1 cut(s)	237
HhaI	GCGC	3 cut(s)	225, 227, 229
Hin6I	GCGC	3 cut(s)	223, 225, 227
HinP1I	GCGC	3 cut(s)	223, 225, 227
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	333
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	4, 29, 149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	3 cut(s)	38, 133, 219
HspAI	GCGC	3 cut(s)	223, 225, 227
LpnPI	CCDG	2 cut(s)	83, 258
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	268, 330
MboII	GAAGA	1 cut(s)	101
MhlI	GDGCHC	2 cut(s)	134, 169
MluCI	AATT	3 cut(s)	180, 258, 262
MnlI	CCTC	4 cut(s)	85, 109, 295, 307
MseI	TTAA	2 cut(s)	33, 261
MvnI	CGCG	2 cut(s)	225, 227
MwoI	GCNNNNNNNGC	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	330
PauI	GCGCGC	2 cut(s)	223, 225
PkrI	GCNGC	1 cut(s)	238
PshBI	ATTAAT	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	216
PteI	GCGCGC	2 cut(s)	223, 225
SaqAI	TTAA	2 cut(s)	33, 261
SatI	GCNGC	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	134, 169
SetI	ASST	3 cut(s)	220, 287, 318
SfaNI	GCATC	1 cut(s)	104
SgeI	CNNG	8 cut(s)	17, 82, 94, 236, 238, 285, 310, 345
Sse9I	AATT	3 cut(s)	180, 258, 262
TaqI	TCGA	2 cut(s)	185, 244
TasI	AATT	3 cut(s)	180, 258, 262
Tru1I	TTAA	2 cut(s)	33, 261
Tru9I	TTAA	2 cut(s)	33, 261
TscAI	CASTG	2 cut(s)	46, 156
TseFI	GTSAC	1 cut(s)	330
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	330
TspDTI	ATGAA	2 cut(s)	50, 102
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	2 cut(s)	46, 156
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.