Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Reverse (-)

48116076 .. 48119706

Gene Structure 3631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGACTGTGCCACTTCTTCTCCGACGATTTTCCGGCGAAAGATGAACGAAGAAGAAAACGCCGGCGAGCTTCTGAATCAGTTCGAACAGATTTTGGAGTCCGATCCGGCAATTAAAAAAGGTTCAAGCTTTGAGCTCATTGTGCACTTAATTACTGTGGGCTACAATGGGTCTATACCAATTGTGCCTCATTGTGGAGGCATTATGATTCTGTGTAGAGTCTATTTTGGAGGGTTTTTGATTGATGCTTTTGGAGACTGTGGTTATATGCAAGTGGCTTATGGTTTGTGTTTTGCACTTGAACTCAGTGATGAGATTGGATTTGTTCATCCATCCCTGTTTGTCAACTTGAATGAAGAGGCACCCTCATCATCTGATGGTATTAGTAATGTGGTGTGCTCAGCAGATGGGAGTGCAGTGATTTGGAATAGGGATCATAAGTTGGGAATTTCGACGGATGTTCTTATTCCATTATATAAGGAAGCTAAGCGCGCACTGATGGCAGCAAATCGACAATATAAGGGAGTTTGTAGCACATCTGATATAACTGGGGTTGAGAGTTCTGTATGTGACTCATTATCGTTGGGTAACGGTGTTGAATGTGAAGTCATGAAGCATAGCAGGGCTGTTTTGTTAGTGAGTTCTGATTTTGGCACTGCTTGGCATTCCAGGCGATGGGTCATCAAGTTAATTGCTGGAAAGTGTTCAACTATGCAAGAGATTGTCACCAAAGAGTCTGAGCTGGTGGAGAAAATAGCTGAGGAGGAGCTTGATTGGAATGAAATGTTGATAAAGCGCTACATAGGAAGAGAGGCTCTATGGCTTCATCGGCGCTTCCTATCCATATTTTGGATAAAACATTTTTTAACTGGTCAGACCAGTCTGCCTGGGGATTGGAAGCACAAAACCAGCATGAATAATGACTTTGGTATCTTTGTGGATAATGAGTTACATCTCCTGCAGTCCTGCTCCATCATTCCAGATGATAGTTTTGATGATTACCAAGCACAGGCTACATATTCTGCTACTTACATGTTATGGTTGATTAAGCAAATCCCTGATTCTGGCGGCGTTGAATTTCTTGAGAAGCTAAGAACCAAACGCCTGAATGCCCTGCTGAACAAGGCCTGCCCTGAAAGGTCCTCAACTTGGGATTCTATAATGGCCTATGTCGAAACATCCGACCATTATGTGAGAGAGTTAGACCCCCACCACCCGGCAAATATGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

410

Amino Acids

46.0

Weight (kDa)

5.22

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AccB7I	CCANNNNNTGG	2 cut(s)	675, 849
AccII	CGCG	1 cut(s)	492
AciI	CCGC	1 cut(s)	1068
AclWI	GGATC	2 cut(s)	98, 441
AcsI	RAATTY	2 cut(s)	447, 1076
AfeI	AGCGCT	1 cut(s)	797
AfiI	CCNNNNNNNGG	7 cut(s)	194, 675, 849, 1009, 1064, 1149, 1216
AflIII	ACRYGT	1 cut(s)	1032
AgsI	TTSAA	6 cut(s)	126, 302, 352, 599, 708, 1076
AjnI	CCWGG	2 cut(s)	668, 886
AluBI	AGCT	8 cut(s)	70, 129, 136, 485, 742, 758, 769, 1090
AluI	AGCT	8 cut(s)	70, 129, 136, 485, 742, 758, 769, 1090
Alw21I	GWGCWC	3 cut(s)	138, 147, 401
Alw26I	GTCTC	1 cut(s)	249
Alw44I	GTGCAC	1 cut(s)	143
AlwI	GGATC	2 cut(s)	98, 441
Aor51HI	AGCGCT	1 cut(s)	797
AoxI	GGCC	2 cut(s)	1125, 1164
ApaLI	GTGCAC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	2 cut(s)	447, 1076
Asp700I	GAANNNNTTC	2 cut(s)	80, 703
AspLEI	GCGC	4 cut(s)	492, 494, 798, 834
AspS9I	GGNCC	1 cut(s)	1140
AsuC2I	CCSGG	1 cut(s)	1217
AsuHPI	GGTGA	1 cut(s)	718
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	1140
BaeGI	GKGCMC	1 cut(s)	147
BaeI	ACNNNNGTAYC	2 cut(s)	913, 946
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	3 cut(s)	138, 147, 401
BbvCI	CCTCAGC	1 cut(s)	759
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	6 cut(s)	340, 371, 401, 493, 669, 980
BciT130I	CCWGG	2 cut(s)	670, 888
BcnI	CCSGG	1 cut(s)	1217
BcoDI	GTCTC	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	959
BfoI	RGCGCY	2 cut(s)	799, 835
BisI	GCNGC	2 cut(s)	504, 1069
BlpI	GCTNAGC	2 cut(s)	400, 486
BlsI	GCNGC	2 cut(s)	505, 1070
Bme1390I	CCNGG	3 cut(s)	670, 888, 1217
Bme18I	GGWCC	1 cut(s)	1140
BmgT120I	GGNCC	1 cut(s)	1140
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	3 cut(s)	670, 888, 1217
BmrI	ACTGGG	1 cut(s)	558
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	558
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
Bpu10I	CCTNAGC	1 cut(s)	759
Bpu1102I	GCTNAGC	2 cut(s)	400, 486
Bpu14I	TTCGAA	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	1103
BpuMI	CCSGG	1 cut(s)	1217
BsaJI	CCNNGG	1 cut(s)	887
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	7 cut(s)	194, 675, 849, 1009, 1064, 1149, 1216
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	3 cut(s)	553, 874, 879
BseBI	CCWGG	2 cut(s)	670, 888
BseDI	CCNNGG	1 cut(s)	887
BseGI	GGATG	4 cut(s)	328, 332, 463, 1178
BseLI	CCNNNNNNNGG	7 cut(s)	194, 675, 849, 1009, 1064, 1149, 1216
BseMII	CTCAG	4 cut(s)	319, 414, 729, 750
BseNI	ACTGG	3 cut(s)	553, 874, 879
BsePI	GCGCGC	1 cut(s)	490
BseRI	GAGGAG	2 cut(s)	776, 779
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	515
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	492
BshFI	GGCC	2 cut(s)	1127, 1166
BshNI	GGYRCC	1 cut(s)	361
BsiHKAI	GWGCWC	3 cut(s)	138, 147, 401
BsiSI	CCGG	4 cut(s)	34, 63, 107, 1217
BslI	CCNNNNNNNGG	7 cut(s)	194, 675, 849, 1009, 1064, 1149, 1216
BsmAI	GTCTC	1 cut(s)	249
BsmI	GAATGC	2 cut(s)	664, 1114
BsnI	GGCC	2 cut(s)	1127, 1166
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	3 cut(s)	138, 147, 401
Bsp143I	GATC	2 cut(s)	103, 433
Bsp1720I	GCTNAGC	2 cut(s)	400, 486
BspACI	CCGC	1 cut(s)	1068
BspANI	GGCC	2 cut(s)	1127, 1166
BspCNI	CTCAG	4 cut(s)	318, 413, 730, 751
BspFNI	CGCG	1 cut(s)	492
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	963
BspPI	GGATC	2 cut(s)	98, 441
BspT104I	TTCGAA	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	3 cut(s)	553, 874, 879
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	887
BssHII	GCGCGC	1 cut(s)	490
BssMI	GATC	2 cut(s)	103, 433
Bst2UI	CCWGG	2 cut(s)	670, 888
Bst4CI	ACNGT	4 cut(s)	8, 157, 260, 593
Bst6I	CTCTTC	2 cut(s)	351, 802
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	4 cut(s)	64, 68, 492, 1129
BstDEI	CTNAG	6 cut(s)	305, 400, 486, 738, 759, 1091
BstF5I	GGATG	4 cut(s)	328, 332, 463, 1178
BstFNI	CGCG	1 cut(s)	492
BstH2I	RGCGCY	2 cut(s)	799, 835
BstHHI	GCGC	4 cut(s)	492, 494, 798, 834
BstKTI	GATC	2 cut(s)	106, 436
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	2 cut(s)	103, 433
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 491, 500, 670, 829
BstNI	CCWGG	2 cut(s)	670, 888
BstNSI	RCATGY	1 cut(s)	1036
BstSCI	CCNGG	3 cut(s)	668, 886, 1215
BstSFI	CTRYAG	1 cut(s)	959
BstSLI	GKGCMC	1 cut(s)	147
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	1127, 1166
BtgZI	GCGATG	1 cut(s)	688
BtsCI	GGATG	4 cut(s)	328, 332, 463, 1178
BtsI	GCAGTG	2 cut(s)	423, 654
BtsIMutI	CAGTG	4 cut(s)	313, 423, 494, 654
Cac8I	GCNNGC	4 cut(s)	64, 68, 492, 1129
CciI	TCATGA	1 cut(s)	609
CfoI	GCGC	4 cut(s)	492, 494, 798, 834
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	1140
CviAII	CATG	3 cut(s)	610, 913, 1033
DdeI	CTNAG	6 cut(s)	305, 400, 486, 738, 759, 1091
DpnI	GATC	2 cut(s)	105, 435
DpnII	GATC	2 cut(s)	103, 433
Eam1104I	CTCTTC	2 cut(s)	351, 802
EarI	CTCTTC	2 cut(s)	351, 802
Ecl136II	GAGCTC	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	1127
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	1140
Eco47III	AGCGCT	1 cut(s)	797
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	1140
EcoRII	CCWGG	2 cut(s)	668, 886
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	3 cut(s)	613, 916, 1036
FatI	CATG	3 cut(s)	609, 912, 1032
Fnu4HI	GCNGC	2 cut(s)	504, 1069
FokI	GGATG	4 cut(s)	315, 319, 470, 1165
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	504, 1069
GlaI	GCGC	4 cut(s)	491, 493, 797, 833
GluI	GCNGC	2 cut(s)	504, 1069
HaeII	RGCGCY	2 cut(s)	799, 835
HaeIII	GGCC	2 cut(s)	1127, 1166
HapII	CCGG	4 cut(s)	34, 63, 107, 1217
HhaI	GCGC	4 cut(s)	492, 494, 798, 834
Hin1II	CATG	3 cut(s)	613, 916, 1036
Hin6I	GCGC	4 cut(s)	490, 492, 796, 832
HinP1I	GCGC	4 cut(s)	490, 492, 796, 832
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	8 cut(s)	76, 98, 208, 219, 572, 734, 1061, 1154
HpaII	CCGG	4 cut(s)	34, 63, 107, 1217
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	2 cut(s)	145, 346
Hpy188I	TCNGA	9 cut(s)	24, 75, 103, 376, 541, 646, 739, 876, 1183
Hpy188III	TCNNGA	3 cut(s)	610, 980, 1082
Hpy8I	GTNNAC	2 cut(s)	145, 346
Hpy99I	CGWCG	2 cut(s)	28, 457
HpyCH4III	ACNGT	4 cut(s)	8, 157, 260, 593
HpyCH4V	TGCA	6 cut(s)	145, 271, 296, 416, 715, 961
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 491, 500, 670, 829
HpyF3I	CTNAG	6 cut(s)	305, 400, 486, 738, 759, 1091
Hsp92II	CATG	3 cut(s)	613, 916, 1036
HspAI	GCGC	4 cut(s)	490, 492, 796, 832
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	103, 433
LmnI	GCTCC	2 cut(s)	766, 974
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	1 cut(s)	235
MaeIII	GTNAC	4 cut(s)	569, 587, 724, 948
MalI	GATC	2 cut(s)	105, 435
MboI	GATC	2 cut(s)	103, 433
MboII	GAAGA	5 cut(s)	9, 62, 65, 368, 819
MfeI	CAATTG	1 cut(s)	180
MhlI	GDGCHC	3 cut(s)	138, 147, 401
MluCI	AATT	6 cut(s)	111, 150, 180, 447, 690, 1076
MlyI	GAGTC	4 cut(s)	107, 228, 566, 743
MmeI	TCCRAC	2 cut(s)	47, 1206
MnlI	CCTC	9 cut(s)	191, 198, 224, 352, 376, 754, 757, 805, 1153
MreI	CGCCGGCG	1 cut(s)	62
MroNI	GCCGGC	1 cut(s)	62
MroXI	GAANNNNTTC	2 cut(s)	80, 703
MseI	TTAA	6 cut(s)	114, 149, 689, 866, 1047, 1231
MspI	CCGG	4 cut(s)	34, 63, 107, 1217
MspR9I	CCNGG	3 cut(s)	670, 888, 1217
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	2 cut(s)	664, 1114
MvaI	CCWGG	2 cut(s)	670, 888
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	5 cut(s)	142, 491, 500, 670, 829
NaeI	GCCGGC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	1217
NdeII	GATC	2 cut(s)	103, 433
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	3 cut(s)	613, 916, 1036
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	2 cut(s)	569, 724
NspI	RCATGY	1 cut(s)	1036
NspV	TTCGAA	1 cut(s)	84
PagI	TCATGA	1 cut(s)	609
PauI	GCGCGC	1 cut(s)	490
PceI	AGGCCT	1 cut(s)	1127
PciI	ACATGT	1 cut(s)	1032
PcsI	WCGNNNNNNNCGW	1 cut(s)	1179
PctI	GAATGC	2 cut(s)	664, 1114
PdiI	GCCGGC	1 cut(s)	64
PdmI	GAANNNNTTC	2 cut(s)	80, 703
PfeI	GAWTC	4 cut(s)	76, 208, 1061, 1154
PflMI	CCANNNNNTGG	2 cut(s)	675, 849
PkrI	GCNGC	2 cut(s)	505, 1070
PleI	GAGTC	4 cut(s)	106, 227, 566, 742
PpsI	GAGTC	4 cut(s)	106, 227, 566, 742
PpuMI	RGGWCCY	1 cut(s)	1140
PscI	ACATGT	1 cut(s)	1032
Psp124BI	GAGCTC	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	1140
Psp6I	CCWGG	2 cut(s)	668, 886
PspGI	CCWGG	2 cut(s)	668, 886
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	1140
PspPPI	RGGWCCY	1 cut(s)	1140
PstI	CTGCAG	1 cut(s)	963
PteI	GCGCGC	1 cut(s)	490
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	6 cut(s)	114, 149, 689, 866, 1047, 1231
SatI	GCNGC	2 cut(s)	504, 1069
Sau3AI	GATC	2 cut(s)	103, 433
Sau96I	GGNCC	1 cut(s)	1140
SchI	GAGTC	4 cut(s)	107, 228, 566, 743
ScrFI	CCNGG	3 cut(s)	670, 888, 1217
SduI	GDGCHC	3 cut(s)	138, 147, 401
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	959
SfuI	TTCGAA	1 cut(s)	84
SgrAI	CRCCGGYG	1 cut(s)	62
SinI	GGWCC	1 cut(s)	1140
SmlI	CTYRAG	1 cut(s)	1082
SmoI	CTYRAG	1 cut(s)	1082
Sse9I	AATT	6 cut(s)	111, 150, 180, 447, 690, 1076
SseBI	AGGCCT	1 cut(s)	1127
SsiI	CCGC	1 cut(s)	1068
SstI	GAGCTC	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	1127
StyD4I	CCNGG	3 cut(s)	668, 886, 1215
TaaI	ACNGT	4 cut(s)	8, 157, 260, 593
TaqI	TCGA	4 cut(s)	84, 452, 511, 1173
TasI	AATT	6 cut(s)	111, 150, 180, 447, 690, 1076
TauI	GCSGC	1 cut(s)	1071
TfiI	GAWTC	4 cut(s)	76, 208, 1061, 1154
Tru1I	TTAA	6 cut(s)	114, 149, 689, 866, 1047, 1231
Tru9I	TTAA	6 cut(s)	114, 149, 689, 866, 1047, 1231
TscAI	CASTG	4 cut(s)	313, 423, 501, 661
TseFI	GTSAC	2 cut(s)	569, 724
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	2 cut(s)	569, 724
TspDTI	ATGAA	7 cut(s)	59, 317, 369, 626, 795, 815, 929
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	4 cut(s)	313, 423, 501, 661
Van91I	CCANNNNNTGG	2 cut(s)	675, 849
VneI	GTGCAC	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	1140
XapI	RAATTY	2 cut(s)	447, 1076
XceI	RCATGY	1 cut(s)	1036
XmnI	GAANNNNTTC	2 cut(s)	80, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.