Rw3G001710

Protein prenyltransferase alpha subunit repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001731
Physical Location & Seq
Reverse (-)
1420679 .. 1424102
3424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G001710.1

Sequence Viewer

Length: 1317 bp
ATGAACGAAGAAGAAAAGGCCGGCGAGCTTCTGAATCAGTTCGAACAGATTTTGGAGTCCGATCCTGCAATTGATGAGATTGGATTTGTTCATCCATCCCTGTTTGTCAACTTGAATGAAGAGGCATCCTCATCATCTGATGGTATTAGTAATGTGGTGTGCTCAGCAGATGGGAGTGCAGTGTTTTGGAATAGGGATCATAAGTTGGGAATTTCGACGGATGTTCTTATTCCATTATATAAGGAAGCTAAGCGCGCGCTGATGGCAGCAAATCGACAATATAAGGGAGTTTGTAGCACATCTGATATAACTGGGGTTGAGAGTTCTGTATGTGACTCATTATCGTTGGGTAACGGTGTTGAAAGTGAAGTCATGAAGCATAGCAGGGCTGTTTTGTTAGTGAGTTCTGATTTTGGCACTGCTTGGAATTCCAGGAAGATGGTGTTGTTAAAGAAGCAAGAGCTCTCAATATTATTGGATGAACTTCTATTCTCAGCTCTTGTTCTTTCATATGCACCTAAATCTGAGCATGCTTGGAGCCACAGGCGATGGGTCATCAAGTTAATTGCTGGAAAGCGTTCAACTCTGCAAGAGATTGTCACCAAAGAGTCTGAGCTGGTGGAGAAAATAGCTGAGAGGTCAAAAATGAATTACCGCGCATGGTATCATCGTTGCTGGTTGGTGACCTACATGACAACAGAGCTGTCTCTACATGAATTAAAGAGATCTAAAAACTGGGCGGGCTTGCATGTTGCTGACCATAGTTGCTTCCATTATCGCAGACAGCTAATGCTTAGGATTTTAGAGGACAGATGCTGTAAACAAGAAAATGAATCTTCTAGTTGTAGTGTTAAAATAAATCAATTATGGAAGGAGGAGCTTGATTGGAATGAAATGTTGATAAAGCGCTACATAGGAAGAGAGGCTCTATGGCTTCATCGGCGCTTCCTATCCTTATTTTGGATAAAACATTTTTTAACTGGTCAGACCAGTCCGCCTGGGGATTGGAAGCACAAAACCAGCATGAATAATGACTTTGGTATCTTTGTGGATAATGAGTTACATCTCCTGCAGTCCTGCTCCATCATTCCAGATGATAGTTTTGATGATTACCAAGCACAGGCTACATATTCTGCTACTTACATGTTATGGTTGATTAAGCAAATCCCTGATTCTGGTGGCGTTGAATTTCTTGAGAAGCTAAGAACCAAACACCTGAATGCCCTGCTGAACAAGGCCTGCCCTGAAAGGTCCTCAACTTGGGATTCTATAATGGCCTATGTCGAAACATCCGACCATTATGTGAAAGAGAGTTAG

Protein Analysis

438

Amino Acids

50.34

Weight (kDa)

6.08

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPTA PF01239 159 - 187 1.4e-06 Protein prenyltransferase alpha subunit repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 255, 257, 657
AciI CCGC 3 cut(s) 655, 740, 995
AclWI GGATC 2 cut(s) 56, 204
AcsI RAATTY 3 cut(s) 210, 427, 1187
AfeI AGCGCT 1 cut(s) 908
AfiI CCNNNNNNNGG 4 cut(s) 960, 1120, 1175, 1260
AflIII ACRYGT 1 cut(s) 1143
AgsI TTSAA 4 cut(s) 115, 362, 582, 1187
AjnI CCWGG 2 cut(s) 431, 997
Alw21I GWGCWC 2 cut(s) 164, 465
Alw26I GTCTC 1 cut(s) 711
AlwI GGATC 2 cut(s) 56, 204
AlwNI CAGNNNCTG 1 cut(s) 816
Aor51HI AGCGCT 1 cut(s) 908
AoxI GGCC 3 cut(s) 18, 1236, 1275
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 3 cut(s) 210, 427, 1187
Asp700I GAANNNNTTC 2 cut(s) 38, 577
AspLEI GCGC 6 cut(s) 255, 257, 259, 659, 909, 945
AspS9I GGNCC 1 cut(s) 1251
AsuHPI GGTGA 2 cut(s) 592, 694
AsuII TTCGAA 1 cut(s) 42
AvaII GGWCC 1 cut(s) 1251
BaeI ACNNNNGTAYC 2 cut(s) 1024, 1057
BanII GRGCYC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 164, 465
BbvI GCAGC 1 cut(s) 278
BccI CCATC 7 cut(s) 103, 134, 164, 256, 433, 543, 1091
BciT130I CCWGG 2 cut(s) 433, 999
BcoDI GTCTC 1 cut(s) 711
BfaI CTAG 1 cut(s) 840
BfmI CTRYAG 1 cut(s) 1070
BfoI RGCGCY 2 cut(s) 910, 946
BglII AGATCT 1 cut(s) 725
BisI GCNGC 1 cut(s) 267
BlpI GCTNAGC 2 cut(s) 163, 249
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 2 cut(s) 433, 999
Bme18I GGWCC 1 cut(s) 1251
BmgT120I GGNCC 1 cut(s) 1251
BmiI GGNNCC 1 cut(s) 539
BmrFI CCNGG 2 cut(s) 433, 999
BmrI ACTGGG 2 cut(s) 321, 745
BmsI GCATC 2 cut(s) 134, 803
BmuI ACTGGG 2 cut(s) 321, 745
BplI GAGNNNNNCTC 2 cut(s) 113, 145
Bpu10I CCTNAGC 1 cut(s) 794
Bpu1102I GCTNAGC 2 cut(s) 163, 249
Bpu14I TTCGAA 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 1214
BsaJI CCNNGG 1 cut(s) 998
Bsc4I CCNNNNNNNGG 4 cut(s) 960, 1120, 1175, 1260
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 4 cut(s) 316, 740, 985, 990
BseBI CCWGG 2 cut(s) 433, 999
BseDI CCNNGG 1 cut(s) 998
BseGI GGATG 6 cut(s) 91, 95, 125, 226, 484, 1289
BseLI CCNNNNNNNGG 4 cut(s) 960, 1120, 1175, 1260
BseMII CTCAG 5 cut(s) 177, 507, 516, 603, 624
BseNI ACTGG 4 cut(s) 316, 740, 985, 990
BsePI GCGCGC 2 cut(s) 253, 255
BseRI GAGGAG 1 cut(s) 890
BseXI GCAGC 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 198
Bsh1236I CGCG 3 cut(s) 255, 257, 657
BshFI GGCC 3 cut(s) 20, 1238, 1277
BsiHKAI GWGCWC 2 cut(s) 164, 465
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 4 cut(s) 960, 1120, 1175, 1260
BsmAI GTCTC 1 cut(s) 711
BsmI GAATGC 1 cut(s) 1225
BsnI GGCC 3 cut(s) 20, 1238, 1277
Bsp119I TTCGAA 1 cut(s) 42
Bsp1286I GDGCHC 2 cut(s) 164, 465
Bsp143I GATC 3 cut(s) 61, 196, 725
Bsp1720I GCTNAGC 2 cut(s) 163, 249
BspACI CCGC 3 cut(s) 655, 740, 995
BspANI GGCC 3 cut(s) 20, 1238, 1277
BspCNI CTCAG 5 cut(s) 176, 506, 517, 604, 625
BspFNI CGCG 3 cut(s) 255, 257, 657
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 539
BspMAI CTGCAG 1 cut(s) 1074
BspPI GGATC 2 cut(s) 56, 204
BspT104I TTCGAA 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 4 cut(s) 316, 740, 985, 990
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 998
BssHII GCGCGC 2 cut(s) 253, 255
BssMI GATC 3 cut(s) 61, 196, 725
Bst2UI CCWGG 2 cut(s) 433, 999
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 2 cut(s) 114, 913
BstBI TTCGAA 1 cut(s) 42
BstC8I GCNNGC 8 cut(s) 22, 26, 255, 257, 531, 742, 746, 1240
BstDEI CTNAG 8 cut(s) 163, 249, 493, 525, 612, 633, 794, 1202
BstEII GGTNACC 1 cut(s) 682
BstF5I GGATG 6 cut(s) 91, 95, 125, 226, 484, 1289
BstFNI CGCG 3 cut(s) 255, 257, 657
BstH2I RGCGCY 2 cut(s) 910, 946
BstHHI GCGC 6 cut(s) 255, 257, 259, 659, 909, 945
BstKTI GATC 3 cut(s) 64, 199, 728
BstMAI GTCTC 1 cut(s) 711
BstMBI GATC 3 cut(s) 61, 196, 725
BstMWI GCNNNNNNNGC 3 cut(s) 254, 263, 940
BstNI CCWGG 2 cut(s) 433, 999
BstNSI RCATGY 3 cut(s) 533, 752, 1147
BstPI GGTNACC 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 431, 997
BstSFI CTRYAG 1 cut(s) 1070
BstUI CGCG 3 cut(s) 255, 257, 657
BstV1I GCAGC 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 725
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 1 cut(s) 725
BsuRI GGCC 3 cut(s) 20, 1238, 1277
BtgZI GCGATG 1 cut(s) 562
BtsCI GGATG 6 cut(s) 91, 95, 125, 226, 484, 1289
BtsI GCAGTG 2 cut(s) 186, 417
BtsIMutI CAGTG 2 cut(s) 186, 417
Cac8I GCNNGC 8 cut(s) 22, 26, 255, 257, 531, 742, 746, 1240
CaiI CAGNNNCTG 1 cut(s) 816
CciI TCATGA 1 cut(s) 372
CfoI GCGC 6 cut(s) 255, 257, 259, 659, 909, 945
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 1251
CviAII CATG 8 cut(s) 373, 530, 660, 691, 713, 749, 1024, 1144
DdeI CTNAG 8 cut(s) 163, 249, 493, 525, 612, 633, 794, 1202
DpnI GATC 3 cut(s) 63, 198, 727
DpnII GATC 3 cut(s) 61, 196, 725
Eam1104I CTCTTC 2 cut(s) 114, 913
EarI CTCTTC 2 cut(s) 114, 913
EciI GGCGGA 1 cut(s) 984
Ecl136II GAGCTC 1 cut(s) 463
Eco147I AGGCCT 1 cut(s) 1238
Eco24I GRGCYC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 1251
Eco47III AGCGCT 1 cut(s) 908
Eco53kI GAGCTC 1 cut(s) 463
Eco91I GGTNACC 1 cut(s) 682
EcoICRI GAGCTC 1 cut(s) 463
EcoO109I RGGNCCY 1 cut(s) 1251
EcoO65I GGTNACC 1 cut(s) 682
EcoRI GAATTC 1 cut(s) 427
EcoRII CCWGG 2 cut(s) 431, 997
EcoT38I GRGCYC 1 cut(s) 465
FaeI CATG 8 cut(s) 376, 533, 663, 694, 716, 752, 1027, 1147
FatI CATG 8 cut(s) 372, 529, 659, 690, 712, 748, 1023, 1143
FauI CCCGC 1 cut(s) 733
FauNDI CATATG 1 cut(s) 511
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 6 cut(s) 78, 82, 112, 233, 491, 1276
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 1 cut(s) 840
GlaI GCGC 6 cut(s) 254, 256, 258, 658, 908, 944
GluI GCNGC 1 cut(s) 267
HaeII RGCGCY 2 cut(s) 910, 946
HaeIII GGCC 3 cut(s) 20, 1238, 1277
HapII CCGG 1 cut(s) 21
HhaI GCGC 6 cut(s) 255, 257, 259, 659, 909, 945
Hin1II CATG 8 cut(s) 376, 533, 663, 694, 716, 752, 1027, 1147
Hin6I GCGC 6 cut(s) 253, 255, 257, 657, 907, 943
HinP1I GCGC 6 cut(s) 253, 255, 257, 657, 907, 943
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 7 cut(s) 34, 56, 335, 608, 833, 1172, 1265
HpaII CCGG 1 cut(s) 21
HphI GGTGA 2 cut(s) 592, 694
Hpy166II GTNNAC 2 cut(s) 109, 821
Hpy188I TCNGA 9 cut(s) 33, 61, 139, 304, 409, 526, 613, 987, 1294
Hpy188III TCNNGA 3 cut(s) 373, 1091, 1193
Hpy8I GTNNAC 2 cut(s) 109, 821
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 865
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 6 cut(s) 68, 179, 515, 589, 748, 1072
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 263, 940
HpyF3I CTNAG 8 cut(s) 163, 249, 493, 525, 612, 633, 794, 1202
Hsp92II CATG 8 cut(s) 376, 533, 663, 694, 716, 752, 1027, 1147
HspAI GCGC 6 cut(s) 253, 255, 257, 657, 907, 943
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 61, 196, 725
LmnI GCTCC 3 cut(s) 537, 877, 1085
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 2 cut(s) 134, 803
MaeI CTAG 1 cut(s) 840
MaeIII GTNAC 5 cut(s) 332, 350, 598, 682, 1059
MalI GATC 3 cut(s) 63, 198, 727
MboI GATC 3 cut(s) 61, 196, 725
MboII GAAGA 6 cut(s) 20, 23, 131, 448, 828, 930
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 1 cut(s) 725
MhlI GDGCHC 2 cut(s) 164, 465
MluCI AATT 8 cut(s) 69, 210, 427, 564, 649, 716, 863, 1187
MlyI GAGTC 3 cut(s) 65, 329, 617
MmeI TCCRAC 1 cut(s) 1317
MnlI CCTC 7 cut(s) 115, 139, 630, 799, 868, 916, 1264
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 2 cut(s) 38, 577
MseI TTAA 6 cut(s) 449, 563, 719, 852, 977, 1158
MslI CAYNNNNRTG 1 cut(s) 1218
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 433, 999
MunI CAATTG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 1225
MvaI CCWGG 2 cut(s) 433, 999
MvnI CGCG 3 cut(s) 255, 257, 657
MwoI GCNNNNNNNGC 3 cut(s) 254, 263, 940
NaeI GCCGGC 1 cut(s) 22
NdeI CATATG 1 cut(s) 511
NdeII GATC 3 cut(s) 61, 196, 725
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 8 cut(s) 376, 533, 663, 694, 716, 752, 1027, 1147
NlaIV GGNNCC 1 cut(s) 539
NmuCI GTSAC 3 cut(s) 332, 598, 682
NspI RCATGY 3 cut(s) 533, 752, 1147
NspV TTCGAA 1 cut(s) 42
PaeI GCATGC 1 cut(s) 533
PagI TCATGA 1 cut(s) 372
PauI GCGCGC 2 cut(s) 253, 255
PceI AGGCCT 1 cut(s) 1238
PciI ACATGT 1 cut(s) 1143
PcsI WCGNNNNNNNCGW 1 cut(s) 1290
PctI GAATGC 1 cut(s) 1225
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 2 cut(s) 38, 577
PfeI GAWTC 4 cut(s) 34, 833, 1172, 1265
PfoI TCCNGGA 1 cut(s) 431
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 3 cut(s) 64, 329, 616
PpsI GAGTC 3 cut(s) 64, 329, 616
PpuMI RGGWCCY 1 cut(s) 1251
PscI ACATGT 1 cut(s) 1143
Psp124BI GAGCTC 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 1251
Psp6I CCWGG 2 cut(s) 431, 997
PspEI GGTNACC 1 cut(s) 682
PspGI CCWGG 2 cut(s) 431, 997
PspN4I GGNNCC 1 cut(s) 539
PspPI GGNCC 1 cut(s) 1251
PspPPI RGGWCCY 1 cut(s) 1251
PstI CTGCAG 1 cut(s) 1074
PstNI CAGNNNCTG 1 cut(s) 816
PsuI RGATCY 1 cut(s) 725
PteI GCGCGC 2 cut(s) 253, 255
RseI CAYNNNNRTG 1 cut(s) 1218
SacI GAGCTC 1 cut(s) 465
SaqAI TTAA 6 cut(s) 449, 563, 719, 852, 977, 1158
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 3 cut(s) 61, 196, 725
Sau96I GGNCC 1 cut(s) 1251
SchI GAGTC 3 cut(s) 65, 329, 617
ScrFI CCNGG 2 cut(s) 433, 999
SduI GDGCHC 2 cut(s) 164, 465
SfaNI GCATC 2 cut(s) 134, 803
SfcI CTRYAG 1 cut(s) 1070
SfuI TTCGAA 1 cut(s) 42
SinI GGWCC 1 cut(s) 1251
SmiMI CAYNNNNRTG 1 cut(s) 1218
SmlI CTYRAG 1 cut(s) 1193
SmoI CTYRAG 1 cut(s) 1193
SphI GCATGC 1 cut(s) 533
Sse9I AATT 8 cut(s) 69, 210, 427, 564, 649, 716, 863, 1187
SseBI AGGCCT 1 cut(s) 1238
SsiI CCGC 3 cut(s) 655, 740, 995
SspI AATATT 1 cut(s) 471
SspMI CTAG 1 cut(s) 840
SstI GAGCTC 1 cut(s) 465
StuI AGGCCT 1 cut(s) 1238
StyD4I CCNGG 2 cut(s) 431, 997
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 4 cut(s) 42, 215, 274, 1284
TasI AATT 8 cut(s) 69, 210, 427, 564, 649, 716, 863, 1187
TfiI GAWTC 4 cut(s) 34, 833, 1172, 1265
Tru1I TTAA 6 cut(s) 449, 563, 719, 852, 977, 1158
Tru9I TTAA 6 cut(s) 449, 563, 719, 852, 977, 1158
TscAI CASTG 2 cut(s) 186, 424
TseFI GTSAC 3 cut(s) 332, 598, 682
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 3 cut(s) 332, 598, 682
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 2 cut(s) 186, 424
VpaK11BI GGWCC 1 cut(s) 1251
XapI RAATTY 3 cut(s) 210, 427, 1187
XceI RCATGY 3 cut(s) 533, 752, 1147
XmnI GAANNNNTTC 2 cut(s) 38, 577
XspI CTAG 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.