Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Reverse (-)

31814944 .. 31818507

Gene Structure 3564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1248000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAAGCATAGCAGGGCGCTTTTGTTGCTAAGTAGTGATTTCGGCACTGCATGGCATTCCAGGAAGCTTGTTGTGTCGCAGAAGCATAAGCACTCAGCATTTTTGGATGAACTTCTCTTGTCAGCACTTGTTCTTTCATATTCACCTAAGTTTGAGTATGCTTGGAGCCATAGGCAGTGGGTCATCAAGTCGATTGCTGGAAAGTGTTCAACTCTGTCGGAGATTGTGACCAAAGACTCTGAGCTGGTGGAGAAAATAGCTGAGAGGTCAAAAATGAATTACCGTGCATGGAACCACCGTTGCTGGTTGGTTTCCTACATGACAAGAGAACAGTTGCTACATGAATTAGAAAGATCCCGAACCTGGGCCTCCTTGCATGTTGCTGATCATAGTTGCTCCCATTATCGCAGTGACGAATGCTATAAACAAGAGATTTCAGCTTCTGGTTACAGTGTTGAGATATATCGGCTGTGGAAGGAAGAGCTTGATTGGGATGAAATGTTGATAAAGCACTACATAGGAAGAGAGAATAACAGCATGAATGACGACTTCAGAATCTTTATGAATAACGAGTTACAGCTCCTCGACTCCTGCTCCATCATTCCAGATAATAGCTTCGATGACTACCAAGCACAGGCTAAACATTCGGCTACTTACATATTATGGTTGATTATGCAAATCCCTGATTCCCGACGCATTGAATTTCAAGATAAGCTGAAAACTGAAAACCTGAAAGCTCTGTTGAATAAAGCGTGCCTGGAAAGGTCCTCAACATGGGATTCTTTAAAATCAATTGAAACGAACTACAATTTGATGATTGAATGCATGGAAAATGCAGTGGAGAGCCTTTTCTCGCTCTCAAATCTAGCGAATTGCGCTGGACCACCAGTCCCTCCGCACCACCAACGTTCCTCCGCTTTGCTAAAGATTGAATCCCCGTTGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

316

Amino Acids

36.74

Weight (kDa)

6.4

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	896, 915
AclI	AACGTT	1 cut(s)	907
AclWI	GGATC	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	1 cut(s)	535
AfiI	CCNNNNNNNGG	4 cut(s)	363, 364, 634, 774
AgsI	TTSAA	7 cut(s)	210, 701, 707, 745, 797, 821, 932
AhdI	GACNNNNNGTC	1 cut(s)	887
AjnI	CCWGG	3 cut(s)	59, 362, 756
AluBI	AGCT	9 cut(s)	67, 244, 260, 440, 484, 580, 615, 715, 737
AluI	AGCT	9 cut(s)	67, 244, 260, 440, 484, 580, 615, 715, 737
AlwI	GGATC	1 cut(s)	348
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	366
ApoI	RAATTY	1 cut(s)	701
Asp700I	GAANNNNTTC	1 cut(s)	205
AspLEI	GCGC	2 cut(s)	19, 878
AspS9I	GGNCC	3 cut(s)	366, 765, 881
AsuHPI	GGTGA	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	765, 881
BccI	CCATC	1 cut(s)	605
BciT130I	CCWGG	3 cut(s)	61, 364, 758
BclI	TGATCA	1 cut(s)	385
BfaI	CTAG	1 cut(s)	866
BfoI	RGCGCY	1 cut(s)	20
Bme1390I	CCNGG	3 cut(s)	61, 364, 758
Bme18I	GGWCC	2 cut(s)	765, 881
BmeRI	GACNNNNNGTC	1 cut(s)	887
BmgT120I	GGNCC	3 cut(s)	366, 765, 881
BmiI	GGNNCC	2 cut(s)	167, 293
BmrFI	CCNGG	3 cut(s)	61, 364, 758
BsaJI	CCNNGG	1 cut(s)	363
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	4 cut(s)	363, 364, 634, 774
Bse1I	ACTGG	1 cut(s)	887
BseBI	CCWGG	3 cut(s)	61, 364, 758
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	112, 499
BseLI	CCNNNNNNNGG	4 cut(s)	363, 364, 634, 774
BseMII	CTCAG	3 cut(s)	108, 231, 252
BseNI	ACTGG	1 cut(s)	887
BseRI	GAGGAG	1 cut(s)	572
BshFI	GGCC	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	4 cut(s)	363, 364, 634, 774
BsmFI	GGGAC	1 cut(s)	875
BsmI	GAATGC	3 cut(s)	55, 422, 827
BsnI	GGCC	1 cut(s)	368
Bsp143I	GATC	2 cut(s)	353, 385
BspACI	CCGC	2 cut(s)	896, 915
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	3 cut(s)	107, 232, 253
BspLI	GGNNCC	2 cut(s)	167, 293
BspPI	GGATC	1 cut(s)	348
BspQI	GCTCTTC	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	887
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	2 cut(s)	353, 385
Bst2UI	CCWGG	3 cut(s)	61, 364, 758
Bst4CI	ACNGT	4 cut(s)	284, 299, 333, 452
Bst6I	CTCTTC	2 cut(s)	474, 517
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	5 cut(s)	29, 94, 147, 240, 261
BstF5I	GGATG	2 cut(s)	112, 499
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	19, 878
BstKTI	GATC	2 cut(s)	356, 388
BstMBI	GATC	2 cut(s)	353, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 875
BstNI	CCWGG	3 cut(s)	61, 364, 758
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	59, 362, 756
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	112, 499
BtsI	GCAGTG	4 cut(s)	45, 182, 415, 843
BtsIMutI	CAGTG	5 cut(s)	45, 182, 415, 457, 843
Cac8I	GCNNGC	1 cut(s)	754
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	2 cut(s)	19, 878
Cfr13I	GGNCC	3 cut(s)	366, 765, 881
CseI	GACGC	1 cut(s)	702
CviAII	CATG	8 cut(s)	51, 288, 319, 341, 377, 538, 774, 826
DdeI	CTNAG	5 cut(s)	29, 94, 147, 240, 261
DpnI	GATC	2 cut(s)	355, 387
DpnII	GATC	2 cut(s)	353, 385
DraI	TTTAAA	1 cut(s)	786
DriI	GACNNNNNGTC	1 cut(s)	887
Eam1104I	CTCTTC	2 cut(s)	474, 517
Eam1105I	GACNNNNNGTC	1 cut(s)	887
EarI	CTCTTC	2 cut(s)	474, 517
Eco47I	GGWCC	2 cut(s)	765, 881
Eco57I	CTGAAG	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	765
EcoRII	CCWGG	3 cut(s)	59, 362, 756
EcoT22I	ATGCAT	1 cut(s)	827
FaeI	CATG	8 cut(s)	54, 291, 322, 344, 380, 541, 777, 829
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	8 cut(s)	50, 287, 318, 340, 376, 537, 773, 825
FbaI	TGATCA	1 cut(s)	385
FokI	GGATG	2 cut(s)	119, 506
FspBI	CTAG	1 cut(s)	866
GlaI	GCGC	2 cut(s)	18, 877
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	368
HgaI	GACGC	1 cut(s)	702
HhaI	GCGC	2 cut(s)	19, 878
Hin1II	CATG	8 cut(s)	54, 291, 322, 344, 380, 541, 777, 829
Hin6I	GCGC	2 cut(s)	17, 876
HinP1I	GCGC	2 cut(s)	17, 876
HincII	GTYRAC	1 cut(s)	942
HindII	GTYRAC	1 cut(s)	942
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	6 cut(s)	236, 555, 587, 686, 779, 932
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	1 cut(s)	942
Hpy188I	TCNGA	3 cut(s)	220, 241, 554
Hpy188III	TCNNGA	4 cut(s)	357, 605, 690, 707
Hpy8I	GTNNAC	1 cut(s)	942
Hpy99I	CGWCG	1 cut(s)	696
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	4 cut(s)	284, 299, 333, 452
HpyCH4IV	ACGT	1 cut(s)	907
HpyCH4V	TGCA	6 cut(s)	50, 287, 376, 676, 825, 836
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 875
HpyF3I	CTNAG	5 cut(s)	29, 94, 147, 240, 261
HpySE526I	ACGT	1 cut(s)	907
Hsp92II	CATG	8 cut(s)	54, 291, 322, 344, 380, 541, 777, 829
HspAI	GCGC	2 cut(s)	17, 876
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	353, 385
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	4 cut(s)	165, 401, 585, 599
MaeI	CTAG	1 cut(s)	866
MaeII	ACGT	1 cut(s)	907
MaeIII	GTNAC	4 cut(s)	226, 410, 446, 573
MalI	GATC	2 cut(s)	355, 387
MboI	GATC	2 cut(s)	353, 385
MboII	GAAGA	2 cut(s)	491, 534
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	1 cut(s)	353
MluCI	AATT	6 cut(s)	277, 344, 701, 792, 808, 871
MlyI	GAGTC	2 cut(s)	230, 581
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	6 cut(s)	258, 379, 593, 778, 903, 922
Mph1103I	ATGCAT	1 cut(s)	827
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	1 cut(s)	785
MspR9I	CCNGG	3 cut(s)	61, 364, 758
MunI	CAATTG	1 cut(s)	792
Mva1269I	GAATGC	3 cut(s)	55, 422, 827
MvaI	CCWGG	3 cut(s)	61, 364, 758
MwoI	GCNNNNNNNGC	2 cut(s)	25, 875
NdeII	GATC	2 cut(s)	353, 385
NlaIII	CATG	8 cut(s)	54, 291, 322, 344, 380, 541, 777, 829
NlaIV	GGNNCC	2 cut(s)	167, 293
NmuCI	GTSAC	2 cut(s)	226, 410
NsiI	ATGCAT	1 cut(s)	827
NspI	RCATGY	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	474
PctI	GAATGC	3 cut(s)	55, 422, 827
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	4 cut(s)	555, 686, 779, 932
PfoI	TCCNGGA	1 cut(s)	59
PleI	GAGTC	2 cut(s)	230, 581
PpsI	GAGTC	2 cut(s)	230, 581
PpuMI	RGGWCCY	1 cut(s)	765
Psp1406I	AACGTT	1 cut(s)	907
Psp5II	RGGWCCY	1 cut(s)	765
Psp6I	CCWGG	3 cut(s)	59, 362, 756
PspGI	CCWGG	3 cut(s)	59, 362, 756
PspN4I	GGNNCC	2 cut(s)	167, 293
PspPI	GGNCC	3 cut(s)	366, 765, 881
PspPPI	RGGWCCY	1 cut(s)	765
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	353
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	785
Sau3AI	GATC	2 cut(s)	353, 385
Sau96I	GGNCC	3 cut(s)	366, 765, 881
SchI	GAGTC	2 cut(s)	230, 581
ScrFI	CCNGG	3 cut(s)	61, 364, 758
SinI	GGWCC	2 cut(s)	765, 881
Sse9I	AATT	6 cut(s)	277, 344, 701, 792, 808, 871
SsiI	CCGC	2 cut(s)	896, 915
SspMI	CTAG	1 cut(s)	866
StyD4I	CCNGG	3 cut(s)	59, 362, 756
TaaI	ACNGT	4 cut(s)	284, 299, 333, 452
TaiI	ACGT	1 cut(s)	910
TaqI	TCGA	3 cut(s)	191, 585, 618
TasI	AATT	6 cut(s)	277, 344, 701, 792, 808, 871
TfiI	GAWTC	4 cut(s)	555, 686, 779, 932
Tru1I	TTAA	1 cut(s)	785
Tru9I	TTAA	1 cut(s)	785
TscAI	CASTG	5 cut(s)	52, 182, 415, 457, 843
TseFI	GTSAC	2 cut(s)	226, 410
Tsp45I	GTSAC	2 cut(s)	226, 410
TspDTI	ATGAA	8 cut(s)	17, 123, 126, 290, 357, 510, 554, 578
TspRI	CASTG	5 cut(s)	52, 182, 415, 457, 843
VpaK11BI	GGWCC	2 cut(s)	765, 881
XapI	RAATTY	1 cut(s)	701
XceI	RCATGY	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	1 cut(s)	866
Zsp2I	ATGCAT	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.